HHsearch alignment for GI: 254780287 and conserved domain: PRK11190
>PRK11190 putative DNA uptake protein; Provisional.
Probab=99.96 E-value=1.5e-28 Score=188.15 Aligned_cols=98 Identities=23% Similarity=0.440 Sum_probs=92.8
Q ss_pred CEEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEHH--HHCCCCCCCEECCCCEEEEECHHHHHHCCCCEEEE
Q ss_conf 0331889999999999728988479999836887651465333--21035211300468789998467765406879998
Q gi|254780287|r 4 IIKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDL--ESKQSEDDIVFEKNGAQIFIDKISLAYLTNSEIDF 81 (109)
Q Consensus 4 mi~iT~~A~~~i~~l~~~~~~~~~lRi~v~~gGCsG~~y~l~~--~~~~~~~D~v~~~~gi~v~vd~~s~~~L~g~~IDy 81 (109)
T Consensus 1 MItITd~A~~~l~~LL~~q~~g~~LRV~V~~~Gcsgaey~~~f~~~de~~~dD~~~e~~gf~V~VD~~S~~yL~ga~IDy 80 (192)
T PRK11190 1 MITISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFNGFSAYVDELSAPFLEDAEIDF 80 (192)
T ss_pred CEEECHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCEEEEEECCEEEEECCCHHHHHCCCEEEE
T ss_conf 95868999999999984388896399999459989956888974677788852899869999998302667867889976
Q ss_pred EECCCCCEEEEECCCCCCCC
Q ss_conf 72785452389888888877
Q gi|254780287|r 82 VDNLLSKSFQIRNPNATSNC 101 (109)
Q Consensus 82 ~~~~~g~gF~i~nPna~~~C 101 (109)
T Consensus 81 ~~d~~G~~ftIkNPNAK~~~ 100 (192)
T PRK11190 81 VTDQLGSQLTLKAPNAKMRK 100 (192)
T ss_pred ECCCCCCEEEEECCCCCCCC
T ss_conf 52677877999899765555