HHsearch alignment for GI: 254780287 and conserved domain: TIGR00049

>TIGR00049 TIGR00049 iron-sulfur cluster assembly accessory protein; InterPro: IPR016092 This family includes HesB which may be involved in nitrogen fixation; the hesB gene is expressed only under nitrogen fixation conditions . Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO). NifU-like proteins are found in species as divergent as humans and H. influenzae suggesting that these proteins perform some basic cellular function .; GO: 0005198 structural molecule activity, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly.
Probab=100.00  E-value=1.5e-43  Score=275.66  Aligned_cols=104  Identities=45%  Similarity=0.911  Sum_probs=101.9

Q ss_pred             EEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEHHHHCCCC-CCCEECCCCEEEEECHHHHHHCCCCEEEEEE
Q ss_conf             331889999999999728988479999836887651465333210352-1130046878999846776540687999872
Q gi|254780287|r    5 IKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSE-DDIVFEKNGAQIFIDKISLAYLTNSEIDFVD   83 (109)
Q Consensus         5 i~iT~~A~~~i~~l~~~~~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~-~D~v~~~~gi~v~vd~~s~~~L~g~~IDy~~   83 (109)
T Consensus         1 i~LTd~A~~~~~~l~~~~~~-~~LRv~V~~GGCSG~~Y~l~~~~~~~~~dD~v~~~~Gv~v~vD~~S~~~l~G~~~Dyv~   79 (105)
T TIGR00049         1 ITLTDSAAKRIKALLAGEGE-LGLRVGVKGGGCSGLQYGLEFDDEPNEKDDEVFEQDGVKVVVDPKSLPYLNGSEIDYVE   79 (105)
T ss_pred             CEECHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCEEEEECCCCHHHHCCCEEEEEE
T ss_conf             90188999999999871589-32789860777576023100114889998878863882898815414542587777873


Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             78545238988888887788622469
Q gi|254780287|r   84 NLLSKSFQIRNPNATSNCGCGTSFSI  109 (109)
Q Consensus        84 ~~~g~gF~i~nPna~~~CgCG~SF~~  109 (109)
T Consensus        80 ~l~~sgF~f~NPNA~~~CGCG~SF~~  105 (105)
T TIGR00049        80 ELEGSGFTFTNPNAKGTCGCGKSFSV  105 (105)
T ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf             56778337764864674787776889