HHsearch alignment for GI: 254780287 and conserved domain: TIGR00049
>TIGR00049 TIGR00049 iron-sulfur cluster assembly accessory protein; InterPro: IPR016092 This family includes HesB which may be involved in nitrogen fixation; the hesB gene is expressed only under nitrogen fixation conditions . Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO). NifU-like proteins are found in species as divergent as humans and H. influenzae suggesting that these proteins perform some basic cellular function .; GO: 0005198 structural molecule activity, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly.
Probab=100.00 E-value=1.5e-43 Score=275.66 Aligned_cols=104 Identities=45% Similarity=0.911 Sum_probs=101.9
Q ss_pred EEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEHHHHCCCC-CCCEECCCCEEEEECHHHHHHCCCCEEEEEE
Q ss_conf 331889999999999728988479999836887651465333210352-1130046878999846776540687999872
Q gi|254780287|r 5 IKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSE-DDIVFEKNGAQIFIDKISLAYLTNSEIDFVD 83 (109)
Q Consensus 5 i~iT~~A~~~i~~l~~~~~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~-~D~v~~~~gi~v~vd~~s~~~L~g~~IDy~~ 83 (109)
T Consensus 1 i~LTd~A~~~~~~l~~~~~~-~~LRv~V~~GGCSG~~Y~l~~~~~~~~~dD~v~~~~Gv~v~vD~~S~~~l~G~~~Dyv~ 79 (105)
T TIGR00049 1 ITLTDSAAKRIKALLAGEGE-LGLRVGVKGGGCSGLQYGLEFDDEPNEKDDEVFEQDGVKVVVDPKSLPYLNGSEIDYVE 79 (105)
T ss_pred CEECHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEECCEEEEECCCCHHHHCCCEEEEEE
T ss_conf 90188999999999871589-32789860777576023100114889998878863882898815414542587777873
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 78545238988888887788622469
Q gi|254780287|r 84 NLLSKSFQIRNPNATSNCGCGTSFSI 109 (109)
Q Consensus 84 ~~~g~gF~i~nPna~~~CgCG~SF~~ 109 (109)
T Consensus 80 ~l~~sgF~f~NPNA~~~CGCG~SF~~ 105 (105)
T TIGR00049 80 ELEGSGFTFTNPNAKGTCGCGKSFSV 105 (105)
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 56778337764864674787776889