Query gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 281
No_of_seqs 149 out of 3224
Neff 7.9
Searched_HMMs 39220
Date Sun May 29 15:27:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780288.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00633 xth exodeoxyribonucl 100.0 0 0 596.0 17.6 259 4-262 1-279 (279)
2 TIGR00195 exoDNase_III exodeox 100.0 0 0 589.1 12.6 258 4-261 1-281 (281)
3 PRK11756 exonuclease III; Prov 100.0 0 0 540.2 21.2 260 4-263 1-268 (268)
4 COG0708 XthA Exonuclease III [ 100.0 0 0 539.5 19.2 256 4-263 1-261 (261)
5 PRK13911 hypothetical protein; 100.0 0 0 492.4 18.8 245 4-261 1-249 (250)
6 pfam03372 Exo_endo_phos Endonu 100.0 1E-43 0 265.0 18.9 240 4-261 1-255 (255)
7 KOG1294 consensus 100.0 1.1E-33 2.8E-38 208.6 8.3 254 3-263 63-335 (335)
8 COG3568 ElsH Metal-dependent h 100.0 1.7E-29 4.4E-34 185.1 13.2 228 3-265 9-259 (259)
9 TIGR03395 sphingomy sphingomye 99.9 1.8E-25 4.7E-30 162.4 12.5 234 4-261 1-283 (283)
10 KOG3873 consensus 99.9 1.1E-25 2.7E-30 163.8 8.4 252 3-278 8-307 (422)
11 PRK05421 hypothetical protein; 99.8 4.1E-20 1E-24 132.4 8.5 214 2-266 32-254 (254)
12 KOG2756 consensus 99.8 6.5E-19 1.6E-23 125.6 10.9 229 2-263 98-349 (349)
13 COG3021 Uncharacterized protei 99.7 1.1E-18 2.9E-23 124.3 5.1 220 3-263 88-307 (309)
14 KOG2338 consensus 99.7 7E-17 1.8E-21 114.2 9.9 151 3-160 116-307 (495)
15 smart00476 DNaseIc deoxyribonu 99.6 2E-14 5.2E-19 100.4 14.5 143 2-156 16-187 (276)
16 PTZ00297 pantothenate kinase; 99.6 8.2E-15 2.1E-19 102.6 9.3 256 4-269 11-320 (1452)
17 COG5239 CCR4 mRNA deadenylase, 99.6 1.6E-14 4E-19 101.0 9.1 247 4-268 31-370 (378)
18 KOG0620 consensus 99.5 4.5E-14 1.2E-18 98.4 10.1 70 3-73 19-114 (361)
19 COG2374 Predicted extracellula 99.5 1.7E-12 4.4E-17 89.5 12.7 240 3-269 463-794 (798)
20 smart00128 IPPc Inositol polyp 99.4 1.7E-12 4.4E-17 89.5 10.2 146 4-155 5-191 (310)
21 KOG0566 consensus 99.3 9.1E-12 2.3E-16 85.5 7.5 143 4-155 539-724 (1080)
22 KOG1294 consensus 97.9 2.1E-05 5.4E-10 49.7 4.7 150 88-261 9-162 (335)
23 COG5411 Phosphatidylinositol 5 97.6 6.3E-05 1.6E-09 47.0 3.9 58 94-155 155-216 (460)
24 KOG1976 consensus 93.0 0.093 2.4E-06 29.2 3.1 72 92-163 157-235 (391)
25 PTZ00312 inositol-1,4,5-tripho 82.6 1.8 4.6E-05 22.0 3.7 63 94-156 70-139 (356)
26 PRK10438 hypothetical protein; 80.9 2.9 7.3E-05 20.8 4.3 38 1-38 1-43 (256)
27 TIGR00683 nanA N-acetylneurami 65.8 2.8 7.2E-05 20.9 1.1 45 18-63 56-105 (294)
28 COG1640 MalQ 4-alpha-glucanotr 65.2 0.97 2.5E-05 23.5 -1.3 22 144-165 220-243 (520)
29 cd07587 ML_beta-AS mammalian-l 63.8 9.9 0.00025 17.8 3.6 23 16-38 90-112 (363)
30 pfam02446 Glyco_hydro_77 4-alp 62.5 0.73 1.9E-05 24.2 -2.4 27 143-169 202-231 (494)
31 TIGR01420 pilT_fam twitching m 61.1 4.5 0.00011 19.7 1.5 24 128-155 187-210 (350)
32 TIGR01975 isoAsp_dipep beta-as 52.2 3.1 7.8E-05 20.7 -0.6 20 223-242 300-321 (391)
33 TIGR01282 nifD nitrogenase mol 51.6 11 0.00027 17.6 2.1 10 223-232 505-514 (521)
34 KOG0808 consensus 48.1 20 0.00051 16.1 3.2 24 15-38 99-122 (387)
35 TIGR00515 accD acetyl-CoA carb 47.4 4.6 0.00012 19.7 -0.3 21 147-174 218-238 (292)
36 TIGR02875 spore_0_A sporulatio 46.2 18 0.00045 16.4 2.5 16 22-37 41-56 (270)
37 KOG2126 consensus 40.3 19 0.00048 16.2 1.9 39 119-157 226-264 (895)
38 TIGR02417 fruct_sucro_rep D-fr 39.8 9.2 0.00023 18.0 0.3 32 83-114 97-128 (335)
39 cd04758 Commd10 COMM_Domain co 37.2 30 0.00076 15.1 2.5 47 216-265 120-168 (186)
40 COG2805 PilT Tfp pilus assembl 34.7 26 0.00066 15.5 1.9 20 136-155 189-208 (353)
41 COG5008 PilU Tfp pilus assembl 31.1 38 0.00097 14.5 2.3 18 138-155 193-210 (375)
42 PRK05282 peptidase E; Validate 30.9 38 0.00098 14.5 2.8 10 48-57 55-64 (233)
43 PRK11340 phosphodiesterase Yae 30.6 39 0.00099 14.5 3.2 22 16-37 66-87 (270)
44 KOG0565 consensus 29.6 40 0.001 14.4 2.4 25 95-119 50-74 (145)
45 cd04748 Commd COMM_Domain, a f 29.0 41 0.0011 14.3 2.5 17 218-234 25-41 (87)
46 cd05785 DNA_polB_like2_exo A s 28.9 42 0.0011 14.3 2.6 12 144-156 71-82 (207)
47 TIGR02104 pulA_typeI pullulana 28.0 43 0.0011 14.2 3.0 31 7-37 330-369 (655)
48 TIGR02407 ectoine_ectB diamino 26.4 27 0.00069 15.4 0.8 14 127-140 213-226 (413)
49 TIGR02538 type_IV_pilB type IV 24.2 49 0.0012 13.9 1.8 15 257-271 249-263 (577)
50 COG2129 Predicted phosphoester 23.7 52 0.0013 13.7 4.3 37 1-37 1-38 (226)
51 TIGR00373 TIGR00373 conserved 23.3 44 0.0011 14.2 1.4 29 179-207 47-75 (168)
52 COG4502 5'(3')-deoxyribonucleo 21.8 35 0.00089 14.7 0.7 35 122-161 97-131 (180)
No 1
>TIGR00633 xth exodeoxyribonuclease III (xth); InterPro: IPR004808 All proteins in this family for which functions are known are 5' AP endonucleases that function in base excision repair and the repair of abasic sites in DNA.; GO: 0004518 nuclease activity, 0006281 DNA repair.
Probab=100.00 E-value=0 Score=596.01 Aligned_cols=259 Identities=35% Similarity=0.655 Sum_probs=247.8
Q ss_pred CEEEEEEECCHHHHHHHH--HHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECC----CCCCEEEEEEECCE
Q ss_conf 079987103188889989--999987289889998565794458977873289789993047----76514898740313
Q gi|254780288|r 4 VTVATWNVNSIRARIHNL--AAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQK----SYNGVAILSKYQPI 77 (281)
Q Consensus 4 lrI~TwNinglr~r~~~l--~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k----~~~GvaIlsk~~~~ 77 (281)
|||+|||||||||+++++ .+||++++||||||||||+.+++++.+.+...||++++.+.+ ||||||||||.+|.
T Consensus 1 mKiiSWNVNGlRA~~~~~sfL~~l~~~~pDvLCLQETK~~~~~~p~~~~~~~GY~~~~~~~~~kk~Gy~GVA~~Sk~~P~ 80 (279)
T TIGR00633 1 MKIISWNVNGLRARLKKLSFLDWLKEENPDVLCLQETKVADEQFPKELLEELGYHVFFHGAKKKKKGYSGVAILSKVEPL 80 (279)
T ss_pred CCEEEEECCHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHCCCCCEEEEECCCCCCCEEEEEEEECCCCC
T ss_conf 91688711234421351128889865389787622002787766346664079815884146658851368998601632
Q ss_pred EEEECCCC-CCCCCCCC-EECCCCCCCCCEEEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHCC--CCHHHHHH
Q ss_conf 78632555-64432330-10110002320799963104667854431-0123677776553322232014--76000011
Q gi|254780288|r 78 EIVTHLPG-DDLDVQAR-FIEATFTINTQTLRIGNLYLPHGNPITST-KYDDKISWIKRFLRFASQRLEL--EEPLIFAG 152 (281)
Q Consensus 78 ~v~~~~~~-~~~d~~~R-~i~~~i~~~~~~i~v~n~y~P~g~~~~~~-~~~~k~~~~~~l~~~l~~~~~~--~~~vIi~G 152 (281)
+|..+|+. +++|.||| .+.+.|+...+.|+|+|+|+|||+..+.+ |+++|++|++.+.+.+.+.+.+ ++||||||
T Consensus 81 ~V~~G~g~~~~~D~egR~~i~~~i~a~f~~f~v~n~YvPNg~~~~~~~rl~Yk~~~w~~~~~~~~~~l~~~~~~pv~~cG 160 (279)
T TIGR00633 81 SVRYGFGVLEEHDEEGRVIIMRVITAEFDGFYVVNVYVPNGGARGLETRLEYKLDFWEALLQYYLKELDASDGKPVIICG 160 (279)
T ss_pred EEEECCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 02206878872103774653331010105479998776686113654462788899999999999998617999799984
Q ss_pred HCCCCCCCCCCHHHHHC------CCCCCCCHHHHHHHHHCCCCC-HHHHCCCCCCCCC-CEECCCCCC-CCCCCCCCCEE
Q ss_conf 01468674200001210------487344634556532103310-0000013378887-200357876-75255777135
Q gi|254780288|r 153 DYNIIPQPHDCYNPIIW------ENDACFTLEVRQSFQKLQNMG-FTDAIRATHDTHH-LYSFWDYYA-DSWSKNKGIRI 223 (281)
Q Consensus 153 DFN~a~~~~D~~~~~~~------~~~~~~~~~er~~~~~l~~~g-l~D~~r~~~~~~~-~yT~~~~~~-~~~~~n~G~RI 223 (281)
||||||+|+|+++|+.| ++.+||+++||++|++|++.| |+|+||++||+.. .|||||||. +||.+|.||||
T Consensus 161 D~NvAh~eiDl~~P~~NRKr~l~~~~~gF~~~ER~~~~~ll~~ggf~DtFR~~~p~~~~~YTwW~YR~K~ar~~N~GWRi 240 (279)
T TIGR00633 161 DLNVAHTEIDLANPKENRKRWLRKGNAGFTPEEREAFDELLEAGGFVDTFRHFNPDTEGAYTWWDYRSKRARDRNRGWRI 240 (279)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCEE
T ss_conf 77889771124577502479988188987889999999998617964870365888797312540023677246734145
Q ss_pred EEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEE
Q ss_conf 699947789833320287122206867676221999995
Q gi|254780288|r 224 DHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLD 262 (281)
Q Consensus 224 D~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~ 262 (281)
||+|+|+.|+++|+++.|+.++|++++|||||||+++|+
T Consensus 241 Dy~l~s~~l~~~v~d~~I~~~~rg~ekPSDHcPi~l~~~ 279 (279)
T TIGR00633 241 DYFLVSEPLAARVVDSYIDSEVRGMEKPSDHCPIVLELD 279 (279)
T ss_pred EEEECCHHHHHHHHHHHCCCHHHCCCCCCCCCCEEEEEC
T ss_conf 326538689986510001303452788887355477759
No 2
>TIGR00195 exoDNase_III exodeoxyribonuclease III; InterPro: IPR000097 DNA damaging agents such as the antitumor drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity. This family contains members of AP endonuclease family 1. Except for Rrp1 and arp, these enzymes are proteins of about 300 amino-acid residues. Rrp1 and arp both contain additional and unrelated sequences in their N-terminal section (about 400 residues for Rrp1 and 270 for arp). The proteins contain glutamate which has been shown , in the Escherichia coli enzyme to bind a divalent metal ion such as magnesium or manganese.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006281 DNA repair, 0005622 intracellular.
Probab=100.00 E-value=0 Score=589.09 Aligned_cols=258 Identities=35% Similarity=0.631 Sum_probs=250.9
Q ss_pred CEEEEEEECCHHHHHHHH--HHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEEC--CCCCCEEEEEEECCEE-
Q ss_conf 079987103188889989--99998728988999856579445897787328978999304--7765148987403137-
Q gi|254780288|r 4 VTVATWNVNSIRARIHNL--AAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQ--KSYNGVAILSKYQPIE- 78 (281)
Q Consensus 4 lrI~TwNinglr~r~~~l--~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~--k~~~GvaIlsk~~~~~- 78 (281)
|||+||||||||||.+++ .+||++.+||||||||||+.+++||.+.+...|||++++++ ||||||||+||.+|..
T Consensus 1 mK~iSwNVNGlRAr~~~~dFl~~~~~~~pDilClQEtKv~~e~~P~~~~~~~GYh~f~~~~~~KGy~GVA~~sk~EP~~d 80 (281)
T TIGR00195 1 MKLISWNVNGLRARLHKGDFLDWLKENKPDILCLQETKVADEQFPRELFEEEGYHVFFSGAKKKGYSGVAIFSKEEPLSD 80 (281)
T ss_pred CCEEEECCCHHHHHCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHCCCEEEECCCEEECCCCEEEEECCCCHHH
T ss_conf 95578602235533004358888423899587320101456677878997649817873642336430799862688588
Q ss_pred EEECCCCCCC-------CCCCCEECCCCCCCCCEEEEEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCH-HH
Q ss_conf 8632555644-------3233010110002320799963104667-8544310123677776553322232014760-00
Q gi|254780288|r 79 IVTHLPGDDL-------DVQARFIEATFTINTQTLRIGNLYLPHG-NPITSTKYDDKISWIKRFLRFASQRLELEEP-LI 149 (281)
Q Consensus 79 v~~~~~~~~~-------d~~~R~i~~~i~~~~~~i~v~n~y~P~g-~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~-vI 149 (281)
|..+|+.+.. |.|+|+|.|++..-.+.+||+|+|+||| +....+|+.+|++|++.|..+++++...++| ||
T Consensus 81 V~~G~~~e~~PaltGdlD~e~R~I~a~~~~~~G~~Tv~N~Y~PnGES~~~~~k~~YKl~w~~~l~~yl~~~~~~~~p~v~ 160 (281)
T TIGR00195 81 VRYGFGVEEEPALTGDLDAEGRVITAEFDGFLGLLTVVNGYFPNGESRLDSEKLPYKLQWLEALQNYLEKLRDKDKPEVI 160 (281)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 60367887765332761216717999757830248999866559843001455788999999999999998636898899
Q ss_pred HHHHCCCCCCCCCCHHHHHCCC---CCC---CCHHHHHHHHHCCCCC-HHHHCCCCCCC-CCCEECCCCCCC-CCCCCCC
Q ss_conf 0110146867420000121048---734---4634556532103310-00000133788-872003578767-5255777
Q gi|254780288|r 150 FAGDYNIIPQPHDCYNPIIWEN---DAC---FTLEVRQSFQKLQNMG-FTDAIRATHDT-HHLYSFWDYYAD-SWSKNKG 220 (281)
Q Consensus 150 i~GDFN~a~~~~D~~~~~~~~~---~~~---~~~~er~~~~~l~~~g-l~D~~r~~~~~-~~~yT~~~~~~~-~~~~n~G 220 (281)
|||||||||+++|+.+|+.+++ .+| |+++||+||++|++.| |+|+||.++|+ ++.|||||||.+ ||++|.|
T Consensus 161 ~CGD~NiAp~eiDl~~P~~nrnRWL~~GKCSF~~~ER~~~~~~l~~Gn~vDtFR~~~p~~~~~YtWwdYR~~Ga~drN~G 240 (281)
T TIGR00195 161 ICGDFNIAPEEIDLHSPDENRNRWLHAGKCSFLPEEREWLDRLLEAGNFVDTFRKFNPDKEGAYTWWDYRTRGARDRNRG 240 (281)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCH
T ss_conf 97677889861356788511133133332138889999999998600613320000568889400331133685024622
Q ss_pred CEEEEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEE
Q ss_conf 13569994778983332028712220686767622199999
Q gi|254780288|r 221 IRIDHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSL 261 (281)
Q Consensus 221 ~RID~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l 261 (281)
|||||+|||+.|+.+|++|.|+.++|++++|||||||+++|
T Consensus 241 WRID~~l~s~~L~~~~~~~~I~~d~rg~EKPSDH~Pv~l~~ 281 (281)
T TIGR00195 241 WRIDYFLVSEPLKERCVDCLIDKDVRGSEKPSDHCPVVLEI 281 (281)
T ss_pred HHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEC
T ss_conf 43355330848988898764121300168888756526658
No 3
>PRK11756 exonuclease III; Provisional
Probab=100.00 E-value=0 Score=540.19 Aligned_cols=260 Identities=33% Similarity=0.547 Sum_probs=245.0
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEEECC
Q ss_conf 07998710318888998999998728988999856579445897787328978999304776514898740313786325
Q gi|254780288|r 4 VTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHL 83 (281)
Q Consensus 4 lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v~~~~ 83 (281)
|||+||||||||+|++.+.+||++++||||||||||+++++|+.+.+...||+++++++|||+||||+||.+|..+..++
T Consensus 1 MkI~SwNVNgiRar~~~l~~~l~~~~pDIlcLQEtK~~~~~~p~~~~~~~gY~~~~~~~KgysGVAi~sk~~p~~v~~g~ 80 (268)
T PRK11756 1 MKFVSFNINGLRARPHQLEAIIEKHQPDVIGLQETKVHDEMFPLEEVEALGYHVFYHGQKGHYGVALLSKQTPIAVRKGF 80 (268)
T ss_pred CEEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHHCCCEEEEECCCCCCCEEEEECCCCHHEEECC
T ss_conf 98999986668675888999997779989999877388112898898526958999616773444687236724458648
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC
Q ss_conf 55644323301011000232079996310466785443-10123677776553322232014760000110146867420
Q gi|254780288|r 84 PGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITS-TKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHD 162 (281)
Q Consensus 84 ~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~-~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D 162 (281)
+.+..|.+||+|.+++....+.|+|+|+|+|||++.+. .++++|++|++.|.+++.+.+.+++|+|+||||||||+++|
T Consensus 81 ~~~~~d~egR~i~~~~~~~~g~~~lin~Y~PnG~~~~~~~k~~~K~~f~~~l~~~l~~~~~~~k~vIi~GD~NVA~~~iD 160 (268)
T PRK11756 81 PTDDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETELSPDNPLLIMGDMNISPTDLD 160 (268)
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH
T ss_conf 88854445627999996377629999985048887772567788999999999999997647995899564343583431
Q ss_pred CHHHHHCC------CCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCC-CCEECCCCCCCCCCCCCCCEEEEEEECHHHHHH
Q ss_conf 00012104------87344634556532103310000001337888-720035787675255777135699947789833
Q gi|254780288|r 163 CYNPIIWE------NDACFTLEVRQSFQKLQNMGFTDAIRATHDTH-HLYSFWDYYADSWSKNKGIRIDHIMLSPEATSL 235 (281)
Q Consensus 163 ~~~~~~~~------~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~-~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~ 235 (281)
++++..+. +.++|+|+||++|+++++.||+|+||.+||+. +.||||+||+++|.+|.||||||||+|++|.++
T Consensus 161 v~~~~~n~k~~~~~g~~~f~~eER~~~~~ll~~G~vD~fR~~~p~~~~~yTwW~yr~~a~~~n~G~RIDy~l~S~~l~~~ 240 (268)
T PRK11756 161 IGIGEENRKRWLRTGKCSFLPEEREWLERLMDWGLVDTFRQLNPDVNDRFSWFDYRSKGFDDNRGLRIDLILATQPLAER 240 (268)
T ss_pred CCCCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCEEEEEEEEECHHHHHH
T ss_conf 35740033553436865688899999862203896887723058998736873655686314871768999859999845
Q ss_pred HHCEEEECHHHCCCCCCCCCCEEEEEEC
Q ss_conf 3202871222068676762219999955
Q gi|254780288|r 236 LHSARIDTKPRGWTKPSDHTPVIVSLDI 263 (281)
Q Consensus 236 v~~~~I~~~~~~~~~~SDH~Pv~~~l~l 263 (281)
+++|.|+++.++.+++||||||+++|+|
T Consensus 241 v~~~~I~~~~rg~~~~SDH~PV~~~l~l 268 (268)
T PRK11756 241 CVETGIDYDIRGMEKPSDHAPIWATFKL 268 (268)
T ss_pred HEEEEECHHHHCCCCCCCEEEEEEEEEC
T ss_conf 3064851888279999980018999969
No 4
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=0 Score=539.48 Aligned_cols=256 Identities=43% Similarity=0.815 Sum_probs=245.2
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCC-EEEEEECCCCCCEEEEEEECCEEEEEC
Q ss_conf 0799871031888899899999872898899985657944589778732897-899930477651489874031378632
Q gi|254780288|r 4 VTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNY-HIETCGQKSYNGVAILSKYQPIEIVTH 82 (281)
Q Consensus 4 lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy-~~~~~~~k~~~GvaIlsk~~~~~v~~~ 82 (281)
|||+||||||||+|++++.+||.+++||||||||||+++++||.+.+...|| +++.+++||||||||+||.++.++..+
T Consensus 1 mkI~SwNVNgiRar~~~~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~gqKgysGVailsr~~~~~v~~g 80 (261)
T COG0708 1 MKIASWNVNGLRARLKKLLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNHGQKGYSGVAILSKKPPDDVRRG 80 (261)
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCCEEEEECCCCCCCEEEEEECCCCHHHHCC
T ss_conf 90689830428989999999998729998999741467666897677527951899527677344899984683021027
Q ss_pred CCC-CCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCC
Q ss_conf 555-6443233010110002320799963104667854431012367777655332223201476000011014686742
Q gi|254780288|r 83 LPG-DDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPH 161 (281)
Q Consensus 83 ~~~-~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~ 161 (281)
+++ +..|.+||+|.+++. .|+|+|+|+|||++++.+++++|++|++.|..++.++...++|+|+||||||||+++
T Consensus 81 ~~~~~~~d~e~R~I~a~~~----~~~v~~~Y~PnG~~~~~~k~~yKl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~i 156 (261)
T COG0708 81 FPGEEEDDEEGRVIEAEFD----GFRVINLYFPNGSSIGLEKFDYKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEI 156 (261)
T ss_pred CCCCCCCCCCCCEEEEEEC----CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 9987665434757999979----899999972799988871067899999999999999874599879966631178532
Q ss_pred CCHHHH-HC--CCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHC
Q ss_conf 000012-10--487344634556532103310000001337888720035787675255777135699947789833320
Q gi|254780288|r 162 DCYNPI-IW--ENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHS 238 (281)
Q Consensus 162 D~~~~~-~~--~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~ 238 (281)
|+++|+ .| .+.+||+++||+||..|++.||+|+||.++|+.+.||||+||+++|+.|.||||||+++|+.|++++++
T Consensus 157 Dv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G~~D~~R~~~p~~~~YTwW~YR~~~~~~n~G~RID~~l~S~~L~~~~~~ 236 (261)
T COG0708 157 DVANPKKRWLNEGNSGFLPEERAWFRRLLNAGFVDTFRLFHPEPEKYTWWDYRANAARRNRGWRIDYILVSPALADRLKD 236 (261)
T ss_pred CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCEEEEEEEECHHHHHHHHH
T ss_conf 12572555401688898989999999998753064567648999963512562130566386068889718999988866
Q ss_pred EEEECHHHCCCCCCCCCCEEEEEEC
Q ss_conf 2871222068676762219999955
Q gi|254780288|r 239 ARIDTKPRGWTKPSDHTPVIVSLDI 263 (281)
Q Consensus 239 ~~I~~~~~~~~~~SDH~Pv~~~l~l 263 (281)
|.|+++.|+|++||||+||+++|++
T Consensus 237 a~I~~~~rg~e~pSDHaPV~~e~~~ 261 (261)
T COG0708 237 AGIDREVRGWEKPSDHAPVWVELDL 261 (261)
T ss_pred CCCCHHHHCCCCCCCCCCEEEEECC
T ss_conf 6863788558888885757999629
No 5
>PRK13911 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=492.39 Aligned_cols=245 Identities=29% Similarity=0.522 Sum_probs=222.4
Q ss_pred CEEEEEEECCHHHHHHH-HHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEE--EEECCCCCCEEEEEEECCEEEE
Q ss_conf 07998710318888998-99999872898899985657944589778732897899--9304776514898740313786
Q gi|254780288|r 4 VTVATWNVNSIRARIHN-LAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIE--TCGQKSYNGVAILSKYQPIEIV 80 (281)
Q Consensus 4 lrI~TwNinglr~r~~~-l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~--~~~~k~~~GvaIlsk~~~~~v~ 80 (281)
|||+||||||||+++++ +.+||++++||||||||||+++++.+.+ ..||+.+ ..++|||+||||+||.+|..+.
T Consensus 1 MkI~swNVNgiRa~~~~~~~~~l~~~~pDIlcLQEtK~~~~~~~~~---~~gy~~~~~~~~~kgysGVai~sk~~p~~v~ 77 (250)
T PRK13911 1 MKLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFE---FKGYFDFWNCAIKKGYSGVVTFTKKEPLSVS 77 (250)
T ss_pred CEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC---CCCCCEEEEEEEECCCCCEEEEECCCCCEEE
T ss_conf 9899997374898777039999966799899997344587657723---0585005621155441634888648872067
Q ss_pred ECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
Q ss_conf 32555644323301011000232079996310466785443101236777765533222320147600001101468674
Q gi|254780288|r 81 THLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQP 160 (281)
Q Consensus 81 ~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~ 160 (281)
.+++.+..|.|||+|.+++ +.++|+|+|+|||+.. ..++++|++|++.|.+++.. +..++|+|+||||||||++
T Consensus 78 ~g~~~~~~d~egR~i~~~~----~~~~l~n~Y~Png~~~-~~~~~~K~~~~~~~~~~~~~-l~~~k~vI~~GD~NIa~~~ 151 (250)
T PRK13911 78 YGINIEEHDKEGRVVTCEF----ESFYLVNVYTPNSQQA-LSRLSYRMSWEVEFKKFLKA-LELKKPVIVCGDLNVAHNE 151 (250)
T ss_pred ECCCCCCCCCCCCEEEEEE----CCEEEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCCH
T ss_conf 1688643220263799998----9999985204898665-50166899999999999998-5148988996333546872
Q ss_pred CCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCC-CCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE
Q ss_conf 20000121048734463455653210331000000133788-87200357876752557771356999477898333202
Q gi|254780288|r 161 HDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDT-HHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239 (281)
Q Consensus 161 ~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~-~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~ 239 (281)
+|+++|+.+.+.+||+|+||++|+++++.||+|+||.+||. .+.||||+||+++|.+|.||||||||+|+.|.+++++|
T Consensus 152 ~Dv~~~~~~~~~~gf~~~ER~~~~~ll~~G~vD~fR~~~p~~~~~yTwW~yr~~a~~~N~G~RID~~l~S~~l~~~v~~~ 231 (250)
T PRK13911 152 IDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDA 231 (250)
T ss_pred HCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHCEEE
T ss_conf 01218587567977698999999998607971765210789998645307001667689887888999888999550161
Q ss_pred EEECHHHCCCCCCCCCCEEEEE
Q ss_conf 8712220686767622199999
Q gi|254780288|r 240 RIDTKPRGWTKPSDHTPVIVSL 261 (281)
Q Consensus 240 ~I~~~~~~~~~~SDH~Pv~~~l 261 (281)
.|+++.++ ||||||+++|
T Consensus 232 ~I~~~~~~----SDH~PV~leL 249 (250)
T PRK13911 232 LIYKDILG----SDHCPVGLEL 249 (250)
T ss_pred EECCCCCC----CCCCCEEEEE
T ss_conf 67389999----9975769995
No 6
>pfam03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12 and Nocturnin.
Probab=100.00 E-value=1e-43 Score=265.02 Aligned_cols=240 Identities=27% Similarity=0.373 Sum_probs=168.7
Q ss_pred CEEEEEEECCHHHHHHH-----HHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCE---------EEEEECCCCCCEE
Q ss_conf 07998710318888998-----999998728988999856579445897787328978---------9993047765148
Q gi|254780288|r 4 VTVATWNVNSIRARIHN-----LAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYH---------IETCGQKSYNGVA 69 (281)
Q Consensus 4 lrI~TwNinglr~r~~~-----l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~---------~~~~~~k~~~Gva 69 (281)
|||+||||||++.+.+. +.++++.++|||||||||+..............+|. ....+.++++|||
T Consensus 1 l~i~t~Nv~g~~~~~~~~~~~~l~~~~~~~~~Dii~LQE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gva 80 (255)
T pfam03372 1 LKILTWNVNGLSAALKLLWARLLLELLKLEDPDVICLQETKLSPESLILLLLLLLGYVSPLTSSVYTGFGGGGGGKGGVA 80 (255)
T ss_pred CEEEEEEECCHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCHHCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEE
T ss_conf 98999994672144104667899999976899889998121790127975775358741003421035531457625259
Q ss_pred EEEEECCEEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCHH
Q ss_conf 9874031378632555644323301011000232079996310466785443101236777765533222320-147600
Q gi|254780288|r 70 ILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRL-ELEEPL 148 (281)
Q Consensus 70 Ilsk~~~~~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~-~~~~~v 148 (281)
|++|.++........... .+..+...+...+..++|+|+|+|++.. +.+.|.++...+.+++.... ..++++
T Consensus 81 i~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~y~~~~~~----~~~~r~~~~~~l~~~l~~~~~~~~~~~ 153 (255)
T pfam03372 81 ILSKEPLVEVILGIFSEN---EKDFIRRRILANGKSFVVVNTHLPAGGE----NLDERLAQLAELLDFLSDLRIPKSDPV 153 (255)
T ss_pred EEECCCCCEEEECCCCCC---CCCEEEEEEEEECCCEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 996478622441578765---5727899999744989999997469997----533799999999999998654359808
Q ss_pred HHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 00110146867420000121048734463455653210331000000133788872003578767525577713569994
Q gi|254780288|r 149 IFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIML 228 (281)
Q Consensus 149 Ii~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~ 228 (281)
|+|||||+.+.+.|........... ...+....+.+..+...+....||||+++..+++++.|+||||||+
T Consensus 154 ii~GDfN~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~riD~il~ 224 (255)
T pfam03372 154 ILCGDFNARPDSWDSALLKSIGKST---------LFLLLERDLVFDGFDELPIGFPPTWWSYRNSSEKKNTGSRLDRILV 224 (255)
T ss_pred EEEEECCCCCCHHHHCCHHHHHCCC---------CCCHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 9972024368422011778772454---------6885665333722554899998787077467563798782389996
Q ss_pred CHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEE
Q ss_conf 778983332028712220686767622199999
Q gi|254780288|r 229 SPEATSLLHSARIDTKPRGWTKPSDHTPVIVSL 261 (281)
Q Consensus 229 s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l 261 (281)
|+.+..++..+.+.... ...+|||+||+++|
T Consensus 225 s~~~~~~~~~~~~~~~~--~~~~SDH~Pv~~~l 255 (255)
T pfam03372 225 SGSLLRRVVILSLLLLV--IFTGSDHRPVLATL 255 (255)
T ss_pred CHHHHHHCEEEEEEECC--CCCCCCCCCEEEEC
T ss_conf 88998223389874067--99999974869979
No 7
>KOG1294 consensus
Probab=100.00 E-value=1.1e-33 Score=208.62 Aligned_cols=254 Identities=26% Similarity=0.422 Sum_probs=191.4
Q ss_pred CCEEEEEEECCHHHHHHH-HHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCC-E-EEEE--ECCCCCCEEEEEEECCE
Q ss_conf 007998710318888998-99999872898899985657944589778732897-8-9993--04776514898740313
Q gi|254780288|r 3 VVTVATWNVNSIRARIHN-LAAWIKENNPDIICLQETKTEDKNFPFETLQSLNY-H-IETC--GQKSYNGVAILSKYQPI 77 (281)
Q Consensus 3 ~lrI~TwNinglr~r~~~-l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy-~-~~~~--~~k~~~GvaIlsk~~~~ 77 (281)
.++|..|||.|+++..+. -..++....+|++|+||+++.....+...-..-+| + ++.+ +..+|.|++.+++..+.
T Consensus 63 ~~~i~~~~i~~~~~~~~~~~~~~~~~~l~d~~~~~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~ 142 (335)
T KOG1294 63 VLNICPWDIAGLEACEKFSGDPEISSELRDLQCLLETKCTIDSGPCSHPTEKGYTHSLLSCASKKDGYSGEIDYSKFKPL 142 (335)
T ss_pred EEECCCHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHCCCEECCCCCEECCCCCCCCCEEECCCCCCCCCCEEEEEECCCC
T ss_conf 76228645654565533465410020012355453225300467430126677345225246566785210333411220
Q ss_pred EEEECCC--CCCCCCCCCEECCCCCCCCCEEEEEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHC---CCCHHHHH
Q ss_conf 7863255--56443233010110002320799963104667-854431012367777655332223201---47600001
Q gi|254780288|r 78 EIVTHLP--GDDLDVQARFIEATFTINTQTLRIGNLYLPHG-NPITSTKYDDKISWIKRFLRFASQRLE---LEEPLIFA 151 (281)
Q Consensus 78 ~v~~~~~--~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g-~~~~~~~~~~k~~~~~~l~~~l~~~~~---~~~~vIi~ 151 (281)
.+.+.+. +..++..+|+|.+.+ ..+.+++.|+|+- ...-.+.+..+.+|...+...+.+.-. ...+++.|
T Consensus 143 ~v~~~~~~~~s~h~~~g~~i~~e~----e~~~l~~~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~ 218 (335)
T KOG1294 143 KVHYGFGAMGSDHRPVGRVIIAEF----EIFILINTYVPNIGGGLVNLVYRILDRWDKEIEEKRKKQSSSKNLKAPVVIC 218 (335)
T ss_pred EEEECCCCCCCCCCCCCEEEEEEE----CCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEC
T ss_conf 465436666776685541788863----1203114337533432000244444466777777764036444445761341
Q ss_pred HHCCCCCCCCC----CHHHHHCC-CCCCCCHHHHHHH-HHCCCCC-HHHHCCCCCCCCC-CEECCCCCCCCCCCCCCCEE
Q ss_conf 10146867420----00012104-8734463455653-2103310-0000013378887-20035787675255777135
Q gi|254780288|r 152 GDYNIIPQPHD----CYNPIIWE-NDACFTLEVRQSF-QKLQNMG-FTDAIRATHDTHH-LYSFWDYYADSWSKNKGIRI 223 (281)
Q Consensus 152 GDFN~a~~~~D----~~~~~~~~-~~~~~~~~er~~~-~~l~~~g-l~D~~r~~~~~~~-~yT~~~~~~~~~~~n~G~RI 223 (281)
||.|++|.++| ..++..+. ..++|++++|.+| ..+.+.| ++|+||..+++.. .||+|.|..+++.++.|||+
T Consensus 219 gd~nvs~~~i~~~~~~~~~~~~~~~~~~~t~e~R~~~~~~~~~~~~~iDt~r~~~~~~~~~~t~Wk~~~~~r~~~~~~r~ 298 (335)
T KOG1294 219 GDLNVSHEEIDPSKPLVSPAGNTLSNAGFTPEERDSFFAELLEKGPLIDTYRELHKDQKKAYTFWKYMPNGRQRGHGERC 298 (335)
T ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEHHHHCCCCCCCCCCHHHCCCCCCCCCCCCE
T ss_conf 55654422216665511445677677898878865677764357750232043167753345524220023368988713
Q ss_pred EEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEEC
Q ss_conf 6999477898333202871222068676762219999955
Q gi|254780288|r 224 DHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDI 263 (281)
Q Consensus 224 D~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~l 263 (281)
||++||+.+...+++++|...+.. .|||+|+.+.|.+
T Consensus 299 dy~~Vsk~~~n~~r~~~Ic~r~~~---gsdh~pi~~~~~~ 335 (335)
T KOG1294 299 DYILVSKPGPNNGRRFYICSRPIH---GSDHCPITLEFFL 335 (335)
T ss_pred EEEEECCCCCCCCCEEEEECCCCC---CCCCCCEEEEECC
T ss_conf 689834767787742324237657---8899981466429
No 8
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.97 E-value=1.7e-29 Score=185.08 Aligned_cols=228 Identities=21% Similarity=0.274 Sum_probs=134.7
Q ss_pred CCEEEEEEEC---CH---HHHHHHHHHHHHHHCCCEEEEEEEEC--C--HHHCCH---HHHHHCCCEEE----EE---EC
Q ss_conf 0079987103---18---88899899999872898899985657--9--445897---78732897899----93---04
Q gi|254780288|r 3 VVTVATWNVN---SI---RARIHNLAAWIKENNPDIICLQETKT--E--DKNFPF---ETLQSLNYHIE----TC---GQ 62 (281)
Q Consensus 3 ~lrI~TwNin---gl---r~r~~~l~~~l~~~~pDIi~LQEvk~--~--~~~~~~---~~~~~~gy~~~----~~---~~ 62 (281)
+++|+||||. |. |-.++.+.+.+.+..||||||||+-. . ...+.. ......+.++. .. ..
T Consensus 9 ~~~v~TyNih~~~~~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 88 (259)
T COG3568 9 RFKVLTYNIHKGFGAFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLAPYWWSGAAFGAVYG 88 (259)
T ss_pred EEEEEEEEEEECCCCCCCEECHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCC
T ss_conf 23789999887667667264479999999764367014641444555422242136788887508752101134442001
Q ss_pred CCCCCEEEEEEECCEEEEEC-CCCCCCCCCCC-EECCCCCCC-CCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 77651489874031378632-55564432330-101100023-2079996310466785443101236777765533222
Q gi|254780288|r 63 KSYNGVAILSKYQPIEIVTH-LPGDDLDVQAR-FIEATFTIN-TQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFAS 139 (281)
Q Consensus 63 k~~~GvaIlsk~~~~~v~~~-~~~~~~d~~~R-~i~~~i~~~-~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~ 139 (281)
-+++|+|||||.|+..+... +|.. .+.++| ++.+++... ++++.|+|+|+- .. -..|.++.+.|.+.+
T Consensus 89 ~~~~GnaiLS~~pi~~v~~~~lp~~-~~~~~Rgal~a~~~~~~g~~l~V~~~HL~----l~---~~~R~~Q~~~L~~~~- 159 (259)
T COG3568 89 EGQHGNAILSRLPIRDVENLALPDP-TGLEPRGALLAEIELPGGKPLRVINAHLG----LS---EESRLRQAAALLALA- 159 (259)
T ss_pred CCEEEEEEEECCCCCCHHHCCCCCC-CCCCCCEEEEEEEECCCCCEEEEEEEECC----CC---HHHHHHHHHHHHHHC-
T ss_conf 0011159985376422110369987-78777526999997689977999997416----33---878999999998635-
Q ss_pred HHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 32014760000110146867420000121048734463455653210331000000133788872003578767525577
Q gi|254780288|r 140 QRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNK 219 (281)
Q Consensus 140 ~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~ 219 (281)
.+.+..|+|+|||||+.|.+.+ | ...+.+ + ++ ...++.+.+...++.. .-||=+.+ +.
T Consensus 160 -~l~~~~p~vl~GDFN~~p~s~~-y---r~~~~~---~-----~~--~~~~~~~~~~~a~~~~-~~tfps~~----p~-- 217 (259)
T COG3568 160 -GLPALNPTVLMGDFNNEPGSAE-Y---RLAARS---P-----LN--AQAALTGAFAPAVGRT-IRTFPSNT----PL-- 217 (259)
T ss_pred -CCCCCCCEEEECCCCCCCCCCC-C---EECCCC---C-----HH--HCCCCCCCCCCCCCCC-CCCCCCCC----CC--
T ss_conf -6756686389713789988724-0---310488---2-----11--1032235657666755-67777778----54--
Q ss_pred CCEEEEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEECCC
Q ss_conf 7135699947789833320287122206867676221999995588
Q gi|254780288|r 220 GIRIDHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIPE 265 (281)
Q Consensus 220 G~RID~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~lp~ 265 (281)
.||||||+|+.+ .+..+.+..+.. +...|||+||.++|+++.
T Consensus 218 -lriD~Ifvs~~~--~i~~~~v~~~~~-a~~aSDHlPl~aeL~~~~ 259 (259)
T COG3568 218 -LRLDRIFVSKEL--AIRSVHVLTDRL-ARVASDHLPLLAELRLKD 259 (259)
T ss_pred -CCCCEEEECCCC--CEEEEEEECCCC-CCCCCCCCCEEEEEECCC
T ss_conf -226689954744--178777523777-642146655688974279
No 9
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.93 E-value=1.8e-25 Score=162.41 Aligned_cols=234 Identities=18% Similarity=0.249 Sum_probs=128.3
Q ss_pred CEEEEEEEC----------CHHHHHHHHHHHHHHHCCCEEEEEEEECCH-HHCCHHHH-HHCCCEEEEEEC--CCC----
Q ss_conf 079987103----------188889989999987289889998565794-45897787-328978999304--776----
Q gi|254780288|r 4 VTVATWNVN----------SIRARIHNLAAWIKENNPDIICLQETKTED-KNFPFETL-QSLNYHIETCGQ--KSY---- 65 (281)
Q Consensus 4 lrI~TwNin----------glr~r~~~l~~~l~~~~pDIi~LQEvk~~~-~~~~~~~~-~~~gy~~~~~~~--k~~---- 65 (281)
|||+||||. |-..|.+.+.+..--++.|||+|||+-... .......+ ..+.|+....|+ +||
T Consensus 1 lKIlsyNv~~lp~~l~~n~~q~~Ra~~I~~~~~i~~~DVvvlqEvFd~~a~~~l~~~L~~~YpY~T~vvg~~~~gwd~t~ 80 (283)
T TIGR03395 1 IKILSHNVYMLSTNLYPNWGQMERADLIASADYIKNQDVVILNEAFDTSASKRLLDNLREEYPYQTDVIGRSKKGWDKTL 80 (283)
T ss_pred CEEEEEEEEECCHHHCCCCCHHHHHHHHCCHHHCCCCCEEEEEHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 92788770325710137877789998744142136898899961228689999999788638841542476666764566
Q ss_pred ----------CCEEEEEEECCEEEEECCCCC----CCCCCCCEECCCCCCCCCEEEEEEEECCCCCCC--CCCCHHHHHH
Q ss_conf ----------514898740313786325556----443233010110002320799963104667854--4310123677
Q gi|254780288|r 66 ----------NGVAILSKYQPIEIVTHLPGD----DLDVQARFIEATFTINTQTLRIGNLYLPHGNPI--TSTKYDDKIS 129 (281)
Q Consensus 66 ----------~GvaIlsk~~~~~v~~~~~~~----~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~--~~~~~~~k~~ 129 (281)
.||.|+||+|+++........ +.-....++-++|...+..+.|+++|+.++++. .......|..
T Consensus 81 g~~~~~~~~~gGv~I~Sk~PI~~~~~~if~~~~g~D~~a~KG~~y~kI~k~gk~~hv~~THlqa~d~~~~~~~~~~~R~~ 160 (283)
T TIGR03395 81 GNYSSSALEDGGVAIVSKWPIEEKIQYIFNKGCGADNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRAN 160 (283)
T ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCHHHHCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 76556613177489996787103468986577473120115708999987997999998144657876554115899999
Q ss_pred HHHHHHHHHHHH-HCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECC
Q ss_conf 776553322232-0147600001101468674200001210487344634556532103310000001337888720035
Q gi|254780288|r 130 WIKRFLRFASQR-LELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFW 208 (281)
Q Consensus 130 ~~~~l~~~l~~~-~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~ 208 (281)
|++++.+++... ..+++|+|++||||+-.. ++| +.+.|...+.... . -....|||
T Consensus 161 Q~~ei~~fi~~~~ip~~e~vi~aGDfNV~k~----------------s~E---Y~~Ml~~Ln~~~p-~---~~g~~~T~- 216 (283)
T TIGR03395 161 QLNEIQDFIDSKNIPKDETVLIGGDLNVNKG----------------SNE---YHDMFKTLNVSEP-R---YVGVPATW- 216 (283)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCC----------------CHH---HHHHHHHCCCCCC-C---CCCCCCCC-
T ss_conf 9999999998559998971899401442689----------------878---9999997289997-6---47986530-
Q ss_pred CCCCCCCC-----CCCCCEEEEEEECHHHHH-HHHCEEEEC--HHHCCC------CCCCCCCEEEEE
Q ss_conf 78767525-----577713569994778983-332028712--220686------767622199999
Q gi|254780288|r 209 DYYADSWS-----KNKGIRIDHIMLSPEATS-LLHSARIDT--KPRGWT------KPSDHTPVIVSL 261 (281)
Q Consensus 209 ~~~~~~~~-----~n~G~RID~il~s~~l~~-~v~~~~I~~--~~~~~~------~~SDH~Pv~~~l 261 (281)
+.+.+... ...--.|||||++++-.. .+-+-.|.. ....|. -+|||+||.+.+
T Consensus 217 D~~~N~~a~~~y~~~~~e~LDYIl~s~~h~qp~~~~n~v~~p~s~~~w~~~~~~~dlSDHyPV~~~i 283 (283)
T TIGR03395 217 DATTNSIAKYYYPKEEPEYLDYIFVSKSHAQPPVWQNKVLDPKSVTSWFKKYTYDDFSDHYPVYGFI 283 (283)
T ss_pred CCCCCHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCEECCCCCCHHHCCCCCCCCCCCCCEEEEC
T ss_conf 8764334552369998530689999788668750303175121141221264567767778536449
No 10
>KOG3873 consensus
Probab=99.93 E-value=1.1e-25 Score=163.79 Aligned_cols=252 Identities=20% Similarity=0.273 Sum_probs=154.3
Q ss_pred CCEEEEEEECCH-------HHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCH--H-HHHHCCCEEEE-EECCCCCCEEEE
Q ss_conf 007998710318-------888998999998728988999856579445897--7-87328978999-304776514898
Q gi|254780288|r 3 VVTVATWNVNSI-------RARIHNLAAWIKENNPDIICLQETKTEDKNFPF--E-TLQSLNYHIET-CGQKSYNGVAIL 71 (281)
Q Consensus 3 ~lrI~TwNingl-------r~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~--~-~~~~~gy~~~~-~~~k~~~GvaIl 71 (281)
-+||.|.|+-|+ +-|++.+-+.+.++..||+.|||+-+.. +|.. + .-..+.|.-++ +|--| +|++++
T Consensus 8 ~lriltlN~Wgip~~Sk~R~~Rm~~~g~~l~~E~yDiv~LQEvWs~e-D~~~L~~~~ss~yPysh~FHSGimG-aGL~vf 85 (422)
T KOG3873 8 ELRILTLNIWGIPYVSKDRRHRMDAIGDELASEKYDIVSLQEVWSQE-DFEYLQSGCSSVYPYSHYFHSGIMG-AGLCVF 85 (422)
T ss_pred EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHCCCCCCHHHHHHCCCCC-CCEEEE
T ss_conf 01346763125643430147889877677763552114289888787-8999997436457457764024556-745876
Q ss_pred EEECCEEEEEC---CCCCCC-----CC-CCCEE-CCCCCCCCCEEEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 74031378632---555644-----32-33010-11000232079996310466--785443101236777765533222
Q gi|254780288|r 72 SKYQPIEIVTH---LPGDDL-----DV-QARFI-EATFTINTQTLRIGNLYLPH--GNPITSTKYDDKISWIKRFLRFAS 139 (281)
Q Consensus 72 sk~~~~~v~~~---~~~~~~-----d~-~~R~i-~~~i~~~~~~i~v~n~y~P~--g~~~~~~~~~~k~~~~~~l~~~l~ 139 (281)
||+|+.+...+ +.+-.. |. .|..+ .+.+..++..+.++|+|+.+ +..-+ +=+.+|..+.=.+.+++.
T Consensus 86 SK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D-~YL~HR~~QAwdlaqfi~ 164 (422)
T KOG3873 86 SKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQND-EYLCHRVAQAWDLAQFIR 164 (422)
T ss_pred ECCCHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEEEEEECCEEEEEEEHHCCCCCCCCCC-HHHHHHHHHHHHHHHHHH
T ss_conf 5375065542001417861024305633563268999953988855120002562235676-114678898999999999
Q ss_pred HHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCC---CCE-----------
Q ss_conf 320147600001101468674200001210487344634556532103310000001337888---720-----------
Q gi|254780288|r 140 QRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTH---HLY----------- 205 (281)
Q Consensus 140 ~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~---~~y----------- 205 (281)
...+++.-+|+|||||+-|.+.- +.-|+++||+|+|+..|+.. ..+
T Consensus 165 ~t~q~~~vVI~~GDLN~~P~dl~--------------------~~ll~~a~l~daw~~~h~~q~e~~~~r~s~~~~l~~g 224 (422)
T KOG3873 165 ATRQNADVVILAGDLNMQPQDLG--------------------HKLLLSAGLVDAWTSLHLDQCESDSFRLSEDKELVEG 224 (422)
T ss_pred HHHCCCCEEEEECCCCCCCCCCC--------------------EEEEECCCHHHHHHHHCHHHHCCCCCCCCHHHHHHCC
T ss_conf 97447868999467788866666--------------------1244403004567653324312752244524455328
Q ss_pred -ECC----CCCCCCCCCC--CCCEEEEEEECHHHHHHHHCEEEEC----HHHCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf -035----7876752557--7713569994778983332028712----2206867676221999995588776666536
Q gi|254780288|r 206 -SFW----DYYADSWSKN--KGIRIDHIMLSPEATSLLHSARIDT----KPRGWTKPSDHTPVIVSLDIPEPRKKQQDST 274 (281)
Q Consensus 206 -T~~----~~~~~~~~~n--~G~RID~il~s~~l~~~v~~~~I~~----~~~~~~~~SDH~Pv~~~l~lp~~~~~~~~~~ 274 (281)
|+- +|+..-...+ .|-||||+|++++- -.++.+++.. .+-.....|||..+.++|.|..-++++++++
T Consensus 225 ~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~-~~~~~a~~~~t~~rvP~~d~s~SDH~Al~a~L~I~~~~~~~~p~t 303 (422)
T KOG3873 225 NTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGD-CNAKIAEVEFTEPRVPGEDCSYSDHEALMATLKIFKQPPRSEPVT 303 (422)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC-EEEEEEEEEECCCCCCCCCCCCCCHHHHEEEEEEECCCCCCCCCC
T ss_conf 7656751036678747887543156689973761-378730588547878999998420243436898404788777753
Q ss_pred CCCC
Q ss_conf 7111
Q gi|254780288|r 275 SQNM 278 (281)
Q Consensus 275 ~~~~ 278 (281)
++.+
T Consensus 304 ~v~~ 307 (422)
T KOG3873 304 TVEV 307 (422)
T ss_pred CCCC
T ss_conf 2565
No 11
>PRK05421 hypothetical protein; Provisional
Probab=99.82 E-value=4.1e-20 Score=132.39 Aligned_cols=214 Identities=19% Similarity=0.298 Sum_probs=110.6
Q ss_pred CCCEEEEEEEC-CHHH-HHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEE----EEEECCCCCCEEEEEEEC
Q ss_conf 70079987103-1888-89989999987289889998565794458977873289789----993047765148987403
Q gi|254780288|r 2 SVVTVATWNVN-SIRA-RIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHI----ETCGQKSYNGVAILSKYQ 75 (281)
Q Consensus 2 ~~lrI~TwNin-glr~-r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~----~~~~~k~~~GvaIlsk~~ 75 (281)
..++|++|||. +-|. ..+.+..+. .++|+|+|||.+...+ + ...+..-.+.+ .+.-.+.-+||..+|+.+
T Consensus 32 ~~~~llvWNI~Kq~~~~W~~~L~~l~--~~~dLvlLQEA~~~~~-l-~~~~~~~~~~~~~a~af~~~~~~~GVmtlS~~~ 107 (254)
T PRK05421 32 ERFRLLVWNIYKQQRAGWLSVLKNLG--KDADLVLLQEAQTTPE-L-VQFATANYLAADQAPAFVLPQHPSGVMTLSKAH 107 (254)
T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHC--CCCCEEEEEECCCCHH-H-HHHHHCCCCHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 64069999942166530799999860--6687899961367765-7-998852551788612220479863478754111
Q ss_pred CEEEEECCCCCCCC-CCCCEECCCCCC-CCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 13786325556443-233010110002-3207999631046678544310123677776553322232014760000110
Q gi|254780288|r 76 PIEIVTHLPGDDLD-VQARFIEATFTI-NTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGD 153 (281)
Q Consensus 76 ~~~v~~~~~~~~~d-~~~R~i~~~i~~-~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GD 153 (281)
+.........|+.- ...-.+.....+ .++.+-|+|+|.-|= ..+...+ .++++.+.+.+. ....|+|++||
T Consensus 108 p~~~c~~~~~EP~lr~pKs~Lit~YpL~~~q~LlVVNiHaINF-~~g~~~y---~~QL~~l~~~i~---~H~GPvI~AGD 180 (254)
T PRK05421 108 PVYCCPLREREPWLRLPKSALITEYPLPNGQTLLVVNIHAINF-SVGVDVY---SKQLEPIGDQIA---HHSGPIILAGD 180 (254)
T ss_pred HHHHCCCCCCCCCCCCCHHHHEEEECCCCCCEEEEEEEEEEEE-ECCHHHH---HHHHHHHHHHHH---HCCCCEEEECC
T ss_conf 2544235666722036312304772058997799999406766-5156999---999999999998---48998798445
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHC-CCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHH
Q ss_conf 146867420000121048734463455653210-3310000001337888720035787675255777135699947789
Q gi|254780288|r 154 YNIIPQPHDCYNPIIWENDACFTLEVRQSFQKL-QNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEA 232 (281)
Q Consensus 154 FN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l-~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l 232 (281)
||+ |+.+.. .++..+ .+.||..+.- .+.. |... .|.-+||||+ .+|
T Consensus 181 FNt-------Ws~~R~-----------~~l~~~~~~~gL~ev~f--~~d~--------R~~~----~g~pLDhify-Rgl 227 (254)
T PRK05421 181 FNT-------WSRKRM-----------NALKRFARELGLKEVRF--TDDQ--------RRKA----FGRPLDHVFY-RGL 227 (254)
T ss_pred CCC-------CCHHHH-----------HHHHHHHHHCCCCEEEC--CCCC--------CEEC----CCCCCCEEEE-CCC
T ss_conf 330-------139999-----------99999999769808753--7677--------3452----5898656998-785
Q ss_pred HHHHHCEEEECHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 8333202871222068676762219999955887
Q gi|254780288|r 233 TSLLHSARIDTKPRGWTKPSDHTPVIVSLDIPEP 266 (281)
Q Consensus 233 ~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~lp~~ 266 (281)
.+.++.+.. ...|||.|++++|.|..+
T Consensus 228 --~~~~a~~~~-----t~~SDHnPl~~~f~L~~~ 254 (254)
T PRK05421 228 --NVEKASVLV-----TRASDHNPLLVEFSLKKP 254 (254)
T ss_pred --EEEEEECCC-----CCCCCCCCEEEEEEECCC
T ss_conf --233105565-----677877738899994289
No 12
>KOG2756 consensus
Probab=99.80 E-value=6.5e-19 Score=125.64 Aligned_cols=229 Identities=19% Similarity=0.275 Sum_probs=129.3
Q ss_pred CCCEEEEEEECCH-----HHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEE--EE
Q ss_conf 7007998710318-----8889989999987289889998565794458977873289789993047765148987--40
Q gi|254780288|r 2 SVVTVATWNVNSI-----RARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILS--KY 74 (281)
Q Consensus 2 ~~lrI~TwNingl-----r~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIls--k~ 74 (281)
+++.++||||.|| ..|++.+..+|+-++||||||||| ....--+....+ -.|..++....+++|.++|. |+
T Consensus 98 ~~~S~~~WnidgLdln~l~~RMrAv~H~i~l~sPdiiflQEV-~p~~y~~~~K~~-s~y~i~~~~~~~~~~~~~l~~s~~ 175 (349)
T KOG2756 98 SMFSLITWNIDGLDLNNLSERMRAVCHYLALYSPDVIFLQEV-IPPYYSYLKKRS-SNYEIITGHEEGYFTAIMLKKSRV 175 (349)
T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC-CCHHHHHHHHHH-HHEEEEEECCCEEEEEEEEEHHHC
T ss_conf 378889861156544318999999999998529877987533-735667898765-430689951451565221102442
Q ss_pred CCEEE-EECCCCCCCCCCCCE-ECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCHHHHH
Q ss_conf 31378-632555644323301-011000232079996310466785443101236777-765533222320147600001
Q gi|254780288|r 75 QPIEI-VTHLPGDDLDVQARF-IEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISW-IKRFLRFASQRLELEEPLIFA 151 (281)
Q Consensus 75 ~~~~v-~~~~~~~~~d~~~R~-i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~-~~~l~~~l~~~~~~~~~vIi~ 151 (281)
..... ..+|+...+ +|- ..++..++|.++.+.+.|+-+..+....+ .....+ +++..+.|+.+ .+..||.+
T Consensus 176 ~Vks~~~i~F~NS~M---~R~L~I~Ev~v~G~Kl~l~tsHLEStr~h~P~r-~~qF~~~~~k~~EaIe~l--PnA~ViFG 249 (349)
T KOG2756 176 KVKSQEIIPFPNSKM---MRNLLIVEVNVSGNKLCLMTSHLESTRGHAPER-MNQFKMVLKKMQEAIESL--PNATVIFG 249 (349)
T ss_pred CCCCCCEEECCCCHH---HHEEEEEEEEECCEEEEEEECCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHC--CCCEEEEC
T ss_conf 852012110575212---104679998517706999841335788998178-899999999999999859--99769965
Q ss_pred HHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHC-CCCCHHHHCCCCC-CCCCCEECCCCCCCCCCCCCC-----CEEE
Q ss_conf 10146867420000121048734463455653210-3310000001337-888720035787675255777-----1356
Q gi|254780288|r 152 GDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKL-QNMGFTDAIRATH-DTHHLYSFWDYYADSWSKNKG-----IRID 224 (281)
Q Consensus 152 GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l-~~~gl~D~~r~~~-~~~~~yT~~~~~~~~~~~n~G-----~RID 224 (281)
||.|-. | +| ..++ +.-+++|+|..+. |..-.|||=+.. + ++-.| +|.|
T Consensus 250 GD~Nlr-------D------------~e---v~r~~lPD~~vDvWE~lg~p~~~~FTwDT~~-N--~nl~G~~a~k~RfD 304 (349)
T KOG2756 250 GDTNLR-------D------------RE---VTRCGLPDNIVDVWEFLGKPKHCQFTWDTQM-N--SNLGGTAACKLRFD 304 (349)
T ss_pred CCCCCH-------H------------HH---CCCCCCCCHHHHHHHHHCCCCCCCEEEECCC-C--CCCCCHHHHHHHHH
T ss_conf 866401-------3------------33---1367899137899998189876741444344-8--64321488888777
Q ss_pred EEEE-----CHHHHHHHHCEEEECHHHC-CCCCCCCCCEEEEEEC
Q ss_conf 9994-----7789833320287122206-8676762219999955
Q gi|254780288|r 225 HIML-----SPEATSLLHSARIDTKPRG-WTKPSDHTPVIVSLDI 263 (281)
Q Consensus 225 ~il~-----s~~l~~~v~~~~I~~~~~~-~~~~SDH~Pv~~~l~l 263 (281)
.||. +..+...-.+..=....|+ ...||||..+.++|.+
T Consensus 305 Ri~~r~~~~~G~~~~~~l~l~g~~kiRgc~~fPSDHwgll~Tl~~ 349 (349)
T KOG2756 305 RIFFRAAAEEGHIIPRSLDLLGLEKLRGCGRFPSDHWGLLCTLDI 349 (349)
T ss_pred HHHEECHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECC
T ss_conf 673000122188565444524256645788678543014666159
No 13
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=1.1e-18 Score=124.28 Aligned_cols=220 Identities=17% Similarity=0.132 Sum_probs=114.5
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEEEC
Q ss_conf 00799871031888899899999872898899985657944589778732897899930477651489874031378632
Q gi|254780288|r 3 VVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTH 82 (281)
Q Consensus 3 ~lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v~~~ 82 (281)
.+++++.|+..-.....++..++...++|++.+||+......+....-..+.|........+-.|++++||.+.......
T Consensus 88 ~~~~l~~N~r~~n~~~~k~Lsl~~~~~~D~v~~~E~~~~~~~~~~~l~~~yP~~~~~~~~~~~~~~a~~sr~~~~~~~~~ 167 (309)
T COG3021 88 LLWNLQKNVRFDNASVAKLLSLIQQLDADAVTTPEGVQLWTAKVGALAAQYPAFILCQHPTGVFTLAILSRRPCCPLTEA 167 (309)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCCCCCCCCC
T ss_conf 45565542025676789999887664753222188887767678899874974240689987221100034655552235
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC
Q ss_conf 55564432330101100023207999631046678544310123677776553322232014760000110146867420
Q gi|254780288|r 83 LPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHD 162 (281)
Q Consensus 83 ~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D 162 (281)
-+.. ....++.+.+.....+..+.|+++|.-+ .+.+.. .+| +++..+...+. .-..|+|++||||+.|
T Consensus 168 e~~~-~~pk~~~~t~~~~~~g~~l~v~~lh~~~-~~~~~~--~~~-~ql~~l~~~i~---~~~gpvIlaGDfNa~p---- 235 (309)
T COG3021 168 EPWL-RLPKSALATAYPLPDGTELTVVALHAVN-FPVGTD--PQR-AQLLELGDQIA---GHSGPVILAGDFNAPP---- 235 (309)
T ss_pred CCCC-CCCCCCEEEEEECCCCCEEEEEEECCCC-CCCCCC--HHH-HHHHHHHHHHH---CCCCCEEEEECCCCCC----
T ss_conf 7640-1776512689986899889998622545-667751--889-99999999997---1788758861378850----
Q ss_pred CHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCEEEE
Q ss_conf 00012104873446345565321033100000013378887200357876752557771356999477898333202871
Q gi|254780288|r 163 CYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARID 242 (281)
Q Consensus 163 ~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~~I~ 242 (281)
|+. ...++...|.-+.+.... ..++.+++.... +-.|++|||||.+. + .+..+..+
T Consensus 236 -WS~---------------~~~R~~~l~~~~~~~~aG--~~~~~~~p~~~~---r~~g~PIDhvf~rg-l--~~~ka~rl 291 (309)
T COG3021 236 -WSR---------------TAKRMAALGGLRAAPRAG--LWEVRFTPDERR---RAFGLPIDHVFYRG-L--TVMKARRL 291 (309)
T ss_pred -HHH---------------HHHHHHHHCCCCCCHHCC--CCCCCCCHHHHH---HCCCCCCCEEEECC-C--CHHHHHHC
T ss_conf -557---------------789999861643222205--776642777874---12589852123358-6--04433205
Q ss_pred CHHHCCCCCCCCCCEEEEEEC
Q ss_conf 222068676762219999955
Q gi|254780288|r 243 TKPRGWTKPSDHTPVIVSLDI 263 (281)
Q Consensus 243 ~~~~~~~~~SDH~Pv~~~l~l 263 (281)
. ...|||.||+++|.+
T Consensus 292 ~-----~~gSDH~PLLveF~~ 307 (309)
T COG3021 292 P-----DRGSDHRPLLVEFSY 307 (309)
T ss_pred C-----CCCCCCCCEEEEEEE
T ss_conf 4-----557777716899885
No 14
>KOG2338 consensus
Probab=99.71 E-value=7e-17 Score=114.18 Aligned_cols=151 Identities=25% Similarity=0.389 Sum_probs=93.2
Q ss_pred CCEEEEEEEC--C------------------HHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCC---HHHHHHCCCEEEE
Q ss_conf 0079987103--1------------------888899899999872898899985657944589---7787328978999
Q gi|254780288|r 3 VVTVATWNVN--S------------------IRARIHNLAAWIKENNPDIICLQETKTEDKNFP---FETLQSLNYHIET 59 (281)
Q Consensus 3 ~lrI~TwNin--g------------------lr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~---~~~~~~~gy~~~~ 59 (281)
-.+|+||||= - +..|-+.+...|...+|||+||||| +.++++ ...+..+||..++
T Consensus 116 ~ftvmSYNILAQ~l~~~~~r~~~~~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEV--q~d~~~~~~~~~~~~lGy~~~~ 193 (495)
T KOG2338 116 DFTVMSYNILAQDLLRDIRRLYFPESGPALKWLRRSQNLLNELKHYDPDVLCLQEV--QEDHYPEFWQPLLGKLGYTGFF 193 (495)
T ss_pred CEEEEEEHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEHHH--HHHHHHHHHHHHHHHCCCEEEE
T ss_conf 44898715747888887677615698032355677689999875139874330023--1345489999988626832789
Q ss_pred E---ECCCCCCEEEEEE---ECCEEE---EECCCCC---CCCCCCCEECCCCCCC---CCEEEEEEEECCCCCCCCCCCH
Q ss_conf 3---0477651489874---031378---6325556---4432330101100023---2079996310466785443101
Q gi|254780288|r 60 C---GQKSYNGVAILSK---YQPIEI---VTHLPGD---DLDVQARFIEATFTIN---TQTLRIGNLYLPHGNPITSTKY 124 (281)
Q Consensus 60 ~---~~k~~~GvaIlsk---~~~~~v---~~~~~~~---~~d~~~R~i~~~i~~~---~~~i~v~n~y~P~g~~~~~~~~ 124 (281)
. +.|+ +||||+-+ |.++.. .+..... ..+.-+-+|.+.+... ++++.|.|+|+=. ...+-
T Consensus 194 ~r~t~~Kt-hG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~----np~~~ 268 (495)
T KOG2338 194 KRRTGTKT-HGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLF----NPSRS 268 (495)
T ss_pred EECCCCCC-CEEEEEEECCCCEECCCCHHHCCCCCCHHHCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEE----CCCCC
T ss_conf 84157777-65899970330203254001214642023132552279987752467445733787520565----57666
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC---HHHHHHHCCCCCCC
Q ss_conf 2367777655332223201476---00001101468674
Q gi|254780288|r 125 DDKISWIKRFLRFASQRLELEE---PLIFAGDYNIIPQP 160 (281)
Q Consensus 125 ~~k~~~~~~l~~~l~~~~~~~~---~vIi~GDFN~a~~~ 160 (281)
+.|+++...+++.+++..+..+ |+++|||||+.|.+
T Consensus 269 ~vrL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~ 307 (495)
T KOG2338 269 DVRLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDS 307 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC
T ss_conf 111578999999999997534357980770577789988
No 15
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.63 E-value=2e-14 Score=100.36 Aligned_cols=143 Identities=19% Similarity=0.255 Sum_probs=71.2
Q ss_pred CCCEEEEEEECCH--H-HHHHHHHHHHHH--HCCCEEEEEEEECCHHHCC---HHHHHH---CCCEEEEEECCCCC----
Q ss_conf 7007998710318--8-889989999987--2898899985657944589---778732---89789993047765----
Q gi|254780288|r 2 SVVTVATWNVNSI--R-ARIHNLAAWIKE--NNPDIICLQETKTEDKNFP---FETLQS---LNYHIETCGQKSYN---- 66 (281)
Q Consensus 2 ~~lrI~TwNingl--r-~r~~~l~~~l~~--~~pDIi~LQEvk~~~~~~~---~~~~~~---~gy~~~~~~~k~~~---- 66 (281)
.+|||+||||..+ . ...+.+.+.|.+ .+.||+++|||+..+.... .+.+.. ..|.+....+-|++
T Consensus 16 ~~lrIasFNIq~FG~sK~~~~~v~~~l~kI~~ryDiv~IQEV~d~~~~av~~L~~~LN~~~~~~y~~~iS~rlGr~sykE 95 (276)
T smart00476 16 ASLRICAFNIQSFGDSKMSNATLMSIIVKILSRYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTYSYVSSEPLGRNSYKE 95 (276)
T ss_pred CCEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCE
T ss_conf 62599998603237340137589999999997398899999984887789999999963688886078567788876426
Q ss_pred CEEEEEEECCEEEEEC--CC------CCCCCCCCCEECCCCCCC---CCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1489874031378632--55------564432330101100023---207999631046678544310123677776553
Q gi|254780288|r 67 GVAILSKYQPIEIVTH--LP------GDDLDVQARFIEATFTIN---TQTLRIGNLYLPHGNPITSTKYDDKISWIKRFL 135 (281)
Q Consensus 67 GvaIlsk~~~~~v~~~--~~------~~~~d~~~R~i~~~i~~~---~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~ 135 (281)
=.|.+.|...+++... .+ .+.+..|+ ..+.|... ...|+++++|.- +.+.. +.++.|.
T Consensus 96 qYafiYR~d~v~v~~~y~y~D~~~~~~D~F~REP--fv~~F~~~~t~~~~F~lv~~Ht~---P~~a~------~Eid~L~ 164 (276)
T smart00476 96 QYLFLYRSDLVSVLDSYLYDDGCECGNDVFSREP--FVVKFSSPSTAVKEFVIVPLHTT---PEAAV------AEIDALY 164 (276)
T ss_pred EEEEEEECCEEEECCCEEECCCCCCCCCCEECCC--EEEEEECCCCCCCCEEEEEEECC---CCCCH------HHHHHHH
T ss_conf 7999982556887263582477789887271399--79999758966662699997448---23027------8999999
Q ss_pred H---HHHHHHCCCCHHHHHHHCCC
Q ss_conf 3---22232014760000110146
Q gi|254780288|r 136 R---FASQRLELEEPLIFAGDYNI 156 (281)
Q Consensus 136 ~---~l~~~~~~~~~vIi~GDFN~ 156 (281)
+ .+.+.. ...++|++||||+
T Consensus 165 dV~~dv~~~~-~~~diiilGDFNA 187 (276)
T smart00476 165 DVYLDVRQKW-GTEDVIFMGDFNA 187 (276)
T ss_pred HHHHHHHHHC-CCCCEEEECCCCC
T ss_conf 9999998744-7666799624568
No 16
>PTZ00297 pantothenate kinase; Provisional
Probab=99.59 E-value=8.2e-15 Score=102.57 Aligned_cols=256 Identities=21% Similarity=0.281 Sum_probs=132.4
Q ss_pred CEEEEEEECCH-H----HHHHHHHHHHHHHC-CCEEEEEEEECCH-------H-----HCCHHHHHHCCCEEEEE-ECCC
Q ss_conf 07998710318-8----88998999998728-9889998565794-------4-----58977873289789993-0477
Q gi|254780288|r 4 VTVATWNVNSI-R----ARIHNLAAWIKENN-PDIICLQETKTED-------K-----NFPFETLQSLNYHIETC-GQKS 64 (281)
Q Consensus 4 lrI~TwNingl-r----~r~~~l~~~l~~~~-pDIi~LQEvk~~~-------~-----~~~~~~~~~~gy~~~~~-~~k~ 64 (281)
.|++|||-|=| | -..+++..+|+.-| .||+.||||-+.. . +...+.+...|++.+.. .+.+
T Consensus 11 ~RvLSYNFNILPRG~GGfQ~ERI~tFL~~vd~YDVvllQEVYAaS~lPY~lQk~lCfQKmLvD~Lk~rGf~hYvISkQPS 90 (1452)
T PTZ00297 11 ARVLSYNFNILPRGCGGFQHERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLVDELKARGFHHYVISKQPS 90 (1452)
T ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 41112035424477775138789999964434554576998786440799998899999989899866765789745885
Q ss_pred C-----------CCEEEEEEECCEEEE-ECCCCCCCCC---CCCEECCCCC-----CCCCEEEEEEEECCCCCCCCCC--
Q ss_conf 6-----------514898740313786-3255564432---3301011000-----2320799963104667854431--
Q gi|254780288|r 65 Y-----------NGVAILSKYQPIEIV-THLPGDDLDV---QARFIEATFT-----INTQTLRIGNLYLPHGNPITST-- 122 (281)
Q Consensus 65 ~-----------~GvaIlsk~~~~~v~-~~~~~~~~d~---~~R~i~~~i~-----~~~~~i~v~n~y~P~g~~~~~~-- 122 (281)
| ||.-|.||+|+..-. +.|...+... ...++.|++. .+.+.|.++|+|+-.-.+...+
T Consensus 91 Y~TmlR~NV~SDNGLIIASRFPi~qrGSYTFr~heRg~qsVrrGCLFAEV~VPl~~GGs~~IvFFNVHLR~eds~~~tss 170 (1452)
T PTZ00297 91 YLTMLRYNVCSDNGLIIASRFPIWQRGSYTFRNHERGEQSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSLPSTSS 170 (1452)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCCCCEEECCCHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEEEEECCCCCCCCHHH
T ss_conf 26676541236786699732643234633511532234555236168998612024894248999876234347832589
Q ss_pred CHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCC--CHHHHC-CC
Q ss_conf 01236777765533222320--14760000110146867420000121048734463455653210331--000000-13
Q gi|254780288|r 123 KYDDKISWIKRFLRFASQRL--ELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNM--GFTDAI-RA 197 (281)
Q Consensus 123 ~~~~k~~~~~~l~~~l~~~~--~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~--gl~D~~-r~ 197 (281)
+.+.-.+|.+..+..+.+.- .+.-|+|++||||+- .+|.. +..+-+..-.+.++.|.+. |..|+. ..
T Consensus 171 qv~etrrFv~svi~n~~~~~~d~a~iPfviAGDFnin--GIdp~------n~G~ptK~f~ell~elQ~lGsgvrevi~d~ 242 (1452)
T PTZ00297 171 QVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNIN--GIDPH------NGGHPTKRFQELLNELQDLGSGVREVIYDE 242 (1452)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCC--CCCCC------CCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999998737787531547996354556--75866------689862899999998876410066551542
Q ss_pred --CCCC-CCCEECCCCCCCCCCC-CCCCEEEEEEECHHHHHHHHCEEEEC----HHHCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf --3788-8720035787675255-77713569994778983332028712----22068676762219999955887766
Q gi|254780288|r 198 --THDT-HHLYSFWDYYADSWSK-NKGIRIDHIMLSPEATSLLHSARIDT----KPRGWTKPSDHTPVIVSLDIPEPRKK 269 (281)
Q Consensus 198 --~~~~-~~~yT~~~~~~~~~~~-n~G~RID~il~s~~l~~~v~~~~I~~----~~~~~~~~SDH~Pv~~~l~lp~~~~~ 269 (281)
.||- ...--||+..++-... -.--|-||+|+++.+ .|....|.+ ..+-....|||.-|.+.+.||.-.+.
T Consensus 243 ~g~hPpTRP~~LFFP~~SKL~R~s~tPQRQDyFfvt~~v--~V~~p~i~Kfv~ssr~PYtYLSDHFGvs~~l~l~~~~~~ 320 (1452)
T PTZ00297 243 TGQHPPTRPPILFFPEQSKLERYSSTPQRQDYFFVTPCV--QVEKPRIEKFVVSSRRPYTYLSDHFGVSARLTLPLNPSV 320 (1452)
T ss_pred CCCCCCCCCCEEECCCHHHHHHCCCCCCCCCEEEEEEEE--EECCCCHHHHHHCCCCCCEEECCCCCCEEEEEECCCCCC
T ss_conf 178989999764554255553045883424338752001--103642676631367874442012571489994478212
No 17
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=99.57 E-value=1.6e-14 Score=101.01 Aligned_cols=247 Identities=23% Similarity=0.260 Sum_probs=116.6
Q ss_pred CEEEEEEEC-------------C----HHHHHHHHHHHHHHHCCCEEEEEEEECCHH-HCCHHHHHHCCCEEEEEECCC-
Q ss_conf 079987103-------------1----888899899999872898899985657944-589778732897899930477-
Q gi|254780288|r 4 VTVATWNVN-------------S----IRARIHNLAAWIKENNPDIICLQETKTEDK-NFPFETLQSLNYHIETCGQKS- 64 (281)
Q Consensus 4 lrI~TwNin-------------g----lr~r~~~l~~~l~~~~pDIi~LQEvk~~~~-~~~~~~~~~~gy~~~~~~~k~- 64 (281)
.+|+|||+= | +.-|.+.+.+-|...+|||+||||+-+.+- .|=.+.+..+||...+..+.+
T Consensus 31 ftimTYN~Laq~y~~r~~y~~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~~k 110 (378)
T COG5239 31 FTIMTYNVLAQTYATRKMYPYSGWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKERK 110 (378)
T ss_pred EEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 69986135346653331247755552237888999998740378656621133667888888873355643288258984
Q ss_pred -----------CCCEEEEEEECCEEEE-------ECCCCCCCCCCC-----------------C----EECCCCCCC-CC
Q ss_conf -----------6514898740313786-------325556443233-----------------0----101100023-20
Q gi|254780288|r 65 -----------YNGVAILSKYQPIEIV-------THLPGDDLDVQA-----------------R----FIEATFTIN-TQ 104 (281)
Q Consensus 65 -----------~~GvaIlsk~~~~~v~-------~~~~~~~~d~~~-----------------R----~i~~~i~~~-~~ 104 (281)
--|++|+-|.-..... +++..-...... + ++...+..+ +.
T Consensus 111 ~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~~w~~l~~~l~n~e~gd 190 (378)
T COG5239 111 VKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNIAWVCLFVGLFNKEPGD 190 (378)
T ss_pred CCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCC
T ss_conf 44244333432303899987526610112432416764062001013467799999986543103132033321579998
Q ss_pred EEEEEEEECCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHCC--------------CC-HHHHHHHCCCCCCCCCCHHHH-
Q ss_conf 79996310466785443101-23677776553322232014--------------76-000011014686742000012-
Q gi|254780288|r 105 TLRIGNLYLPHGNPITSTKY-DDKISWIKRFLRFASQRLEL--------------EE-PLIFAGDYNIIPQPHDCYNPI- 167 (281)
Q Consensus 105 ~i~v~n~y~P~g~~~~~~~~-~~k~~~~~~l~~~l~~~~~~--------------~~-~vIi~GDFN~a~~~~D~~~~~- 167 (281)
.+.+.|+|.|= + +++ +.|+-+...+.+++.+...+ .+ ++++|||||+-+...+ ++.-
T Consensus 191 ~~~va~Th~~w----~-~~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~~s~v-y~~l~ 264 (378)
T COG5239 191 TPYVANTHLPW----D-PKYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLRASLV-YKFLV 264 (378)
T ss_pred CEEEEECCCCC----C-CCCCCHHEEHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCEECCEE-HHHHH
T ss_conf 30677011245----6-777712100246799999998642077410014545676554235787100003300-14544
Q ss_pred ----HCCCCCCCCHHHHHHHHHCCC-CCHHHHCCC--CCC-CCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE
Q ss_conf ----104873446345565321033-100000013--378-887200357876752557771356999477898333202
Q gi|254780288|r 168 ----IWENDACFTLEVRQSFQKLQN-MGFTDAIRA--THD-THHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239 (281)
Q Consensus 168 ----~~~~~~~~~~~er~~~~~l~~-~gl~D~~r~--~~~-~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~ 239 (281)
.+++. + .-| .|+-+.. .++++..-. .++ +.-.||.|+ ++| +| -|||||.+.++..+++..
T Consensus 265 ~~~~q~H~~-~---~~~-~~~lysvg~~~~h~~n~~~~~~~~~~~fTN~t---~~~---kG-~iDYIfy~~~~~~~~~~~ 332 (378)
T COG5239 265 TSQIQLHES-L---NGR-DFSLYSVGYKFVHPENLKSDNSKGELGFTNWT---PGF---KG-VIDYIFYHGGLLTRQTGL 332 (378)
T ss_pred HHHHHHHHC-C---CCC-CHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCC---CCC---CC-EEEEEEEECCCCEEEECC
T ss_conf 079886410-3---544-32220155455584231557876876501356---654---54-257999846861044045
Q ss_pred --EEEC----HHH---CCCCCCCCCCEEEEEECCCCCC
Q ss_conf --8712----220---6867676221999995588776
Q gi|254780288|r 240 --RIDT----KPR---GWTKPSDHTPVIVSLDIPEPRK 268 (281)
Q Consensus 240 --~I~~----~~~---~~~~~SDH~Pv~~~l~lp~~~~ 268 (281)
.++. ... ....||||-|+.++|..+....
T Consensus 333 l~~ve~e~~~k~~G~pn~~~pSdhipl~~ef~~~~~~~ 370 (378)
T COG5239 333 LGVVEGEYASKVIGLPNMPFPSDHIPLLAEFASDHKNL 370 (378)
T ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCC
T ss_conf 55545102331105678999512440010134432013
No 18
>KOG0620 consensus
Probab=99.55 E-value=4.5e-14 Score=98.39 Aligned_cols=70 Identities=30% Similarity=0.330 Sum_probs=47.1
Q ss_pred CCEEEEEEECC------------------HHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEE---
Q ss_conf 00799871031------------------888899899999872898899985657944589778732897899930---
Q gi|254780288|r 3 VVTVATWNVNS------------------IRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCG--- 61 (281)
Q Consensus 3 ~lrI~TwNing------------------lr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~--- 61 (281)
+.+|+|||+-. +..|...+.+-|...+||++||||| ..-+.|....+...||...+..
T Consensus 19 ~~~v~s~n~l~~~~~~~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icLqev-~~~~~~~~p~l~~~gY~g~~~~k~~ 97 (361)
T KOG0620 19 TFTVLSYNILSQLYATSKLYMYCPSWALSWEYRRQLLLEEILNYNADILCLQEV-DRYHDFFSPELEASGYSGIFIEKTR 97 (361)
T ss_pred EEEECCCCHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCEEECCHH-HHHHHHCCCHHHHCCCCCEEECCCC
T ss_conf 354211111016550467775351443167888899999874778551315126-6798775641543587412421465
Q ss_pred -----CCCCCCEEEEEE
Q ss_conf -----477651489874
Q gi|254780288|r 62 -----QKSYNGVAILSK 73 (281)
Q Consensus 62 -----~k~~~GvaIlsk 73 (281)
.+.-.|+||+-|
T Consensus 98 ~~~~~~~~~dGcaiffk 114 (361)
T KOG0620 98 MGEVELEKIDGCAIFFK 114 (361)
T ss_pred CCHHHCCCCCEEEEEEC
T ss_conf 21110366763666644
No 19
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=99.47 E-value=1.7e-12 Score=89.51 Aligned_cols=240 Identities=20% Similarity=0.296 Sum_probs=130.8
Q ss_pred CCEEEEEEE----CCH-------------H--------HH-HHHHHHHHHHHCCCEEEEEEEECC----HH--HCC---H
Q ss_conf 007998710----318-------------8--------88-998999998728988999856579----44--589---7
Q gi|254780288|r 3 VVTVATWNV----NSI-------------R--------AR-IHNLAAWIKENNPDIICLQETKTE----DK--NFP---F 47 (281)
Q Consensus 3 ~lrI~TwNi----ngl-------------r--------~r-~~~l~~~l~~~~pDIi~LQEvk~~----~~--~~~---~ 47 (281)
.|||.|+|| +++ | +| ...+...|...++||++|-|+.-. +. .+. .
T Consensus 463 ~LkiasfNVlNyf~~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eien~~~~~~s~~ai~~lV~ 542 (798)
T COG2374 463 SLKIASFNVLNYFNKLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIENNGYGTDSGDAIAQLVN 542 (798)
T ss_pred EEEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 34431332122420377777775553102476635677787788888886124012102355206777774778999999
Q ss_pred HHHHHC----CCEEEEEECC-C----CCCEEEEEEECCEEEEEC--------CC--CCCCCCCCCE-ECCCC--CCCCCE
Q ss_conf 787328----9789993047-7----651489874031378632--------55--5644323301-01100--023207
Q gi|254780288|r 48 ETLQSL----NYHIETCGQK-S----YNGVAILSKYQPIEIVTH--------LP--GDDLDVQARF-IEATF--TINTQT 105 (281)
Q Consensus 48 ~~~~~~----gy~~~~~~~k-~----~~GvaIlsk~~~~~v~~~--------~~--~~~~d~~~R~-i~~~i--~~~~~~ 105 (281)
..-+.. .|.+...+.. + .-+||++.|-.-+...-. +. ++..+...|. +..+| ...+..
T Consensus 543 ~lna~~G~~~~y~~v~p~~~~~lgtD~I~vg~iY~~~~V~~~g~~~~~~~~a~~~v~~~~~~n~R~~laqtF~~~~~~ek 622 (798)
T COG2374 543 ALNAKAGAGTRYAFVAPGRNGGLGTDAIRVGFIYKPSAVSLVGKAAIVDNDAFLGVGEIDDNNARPPLAQTFQDLSGGEK 622 (798)
T ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCE
T ss_conf 99863279952899846755776777256788961536776365321155333554556654457405666532057717
Q ss_pred EEEEEEECCCCC---CCCC-------CCHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCC
Q ss_conf 999631046678---5443-------1012367777655332223--201476000011014686742000012104873
Q gi|254780288|r 106 LRIGNLYLPHGN---PITS-------TKYDDKISWIKRFLRFASQ--RLELEEPLIFAGDYNIIPQPHDCYNPIIWENDA 173 (281)
Q Consensus 106 i~v~n~y~P~g~---~~~~-------~~~~~k~~~~~~l~~~l~~--~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~ 173 (281)
|+++--|+-+-+ +.+. .-...|.+...+|..++.. .-.++.+++|+||||. --
T Consensus 623 fvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~~~d~~~viLGD~N~-y~-------------- 687 (798)
T COG2374 623 FVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTGKADADIVILGDFND-YA-------------- 687 (798)
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCH-HH--------------
T ss_conf 999983012668888775656664441046889999999999862856556788799724321-31--------------
Q ss_pred CCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCEEEEC---HH-----
Q ss_conf 4463455653210331000000133788872003578767525577713569994778983332028712---22-----
Q gi|254780288|r 174 CFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDT---KP----- 245 (281)
Q Consensus 174 ~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~~I~~---~~----- 245 (281)
+.+. ++.|.+.|+...--.+++....|||. |.-+.|. +||+|+|..+..+++.+.+.+ ++
T Consensus 688 -~edp----I~~l~~aGy~~l~~~~~~~~~~YSY~------f~G~~gt-LDhaLas~sl~~~v~~a~ewHINAdE~~~ld 755 (798)
T COG2374 688 -FEDP----IQALEGAGYMNLAARFHDAGDRYSYV------FNGQSGT-LDHALASASLAAQVSGATEWHINADEPDALD 755 (798)
T ss_pred -HCCH----HHHHHHCCCHHHHHHCCCCCCCEEEE------ECCCCCH-HHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
T ss_conf -0137----89986248301100105778734899------8782640-7666522445521567426530456662322
Q ss_pred ---------------HCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf ---------------068676762219999955887766
Q gi|254780288|r 246 ---------------RGWTKPSDHTPVIVSLDIPEPRKK 269 (281)
Q Consensus 246 ---------------~~~~~~SDH~Pv~~~l~lp~~~~~ 269 (281)
....++|||=||++.|+|-....+
T Consensus 756 Yn~~Fk~q~~~~~~~~~~fR~SDHDPvvvglnL~~~a~~ 794 (798)
T COG2374 756 YNLEFKGQNVSLYKTTNPFRASDHDPVVVGLNLLGTASL 794 (798)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf 102103565533356775535789976999870266656
No 20
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=99.42 E-value=1.7e-12 Score=89.50 Aligned_cols=146 Identities=23% Similarity=0.313 Sum_probs=73.7
Q ss_pred CEEEEEEECCHHHH-HHHHHHHHHH-------HCCCE--EEEEEE-ECCHHH-------CC--H-----HHHHH-CCCEE
Q ss_conf 07998710318888-9989999987-------28988--999856-579445-------89--7-----78732-89789
Q gi|254780288|r 4 VTVATWNVNSIRAR-IHNLAAWIKE-------NNPDI--ICLQET-KTEDKN-------FP--F-----ETLQS-LNYHI 57 (281)
Q Consensus 4 lrI~TwNinglr~r-~~~l~~~l~~-------~~pDI--i~LQEv-k~~~~~-------~~--~-----~~~~~-~gy~~ 57 (281)
+-|+||||+|.... ...+..||.. ..||| |||||+ ...+.. .. + ..+.. ..|..
T Consensus 5 V~v~TWNVg~~~~~~~~~l~~wl~~~~~~~~~~~~Di~viglQE~~~~~~~~~~~~~~~~~~~w~~~i~~~l~~~~~Y~~ 84 (310)
T smart00128 5 VLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLETIAGKERLWSKLIESSLNGDGQYNV 84 (310)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99999716985798877888764744334678999999997476773534666432522354499999986177887789
Q ss_pred EEEECCCCCCEEEEEEECCE----EE-----EECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 99304776514898740313----78-----6325556443233010110002320799963104667854431012367
Q gi|254780288|r 58 ETCGQKSYNGVAILSKYQPI----EI-----VTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKI 128 (281)
Q Consensus 58 ~~~~~k~~~GvaIlsk~~~~----~v-----~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~ 128 (281)
.....-+-.+++|++|.... .+ .+++.+ .....| .+...+.+.+..+.++|+|+++|.. ..+.|.
T Consensus 85 v~~~~l~gi~l~Vf~k~~~~~~i~~v~~~~v~~G~~g-~~gnKG-aV~vr~~i~~t~~~Fvn~HL~a~~~----~~~~Rn 158 (310)
T smart00128 85 LAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGG-LWGNKG-AVAVRFKLSDTSFCFVNSHLAAGAS----NVEQRN 158 (310)
T ss_pred EEEEECCCEEEEEEECHHHCCCCCCCCCCCCCCCCCC-CCCCCC-CEEEEEEECCEEEEEEEECCCCCCC----HHHHHH
T ss_conf 9888614449999980122564666410115678776-225575-1899999978688887623777743----077778
Q ss_pred HHHHHHHHHHHH------HHCCCCHHHHHHHCC
Q ss_conf 777655332223------201476000011014
Q gi|254780288|r 129 SWIKRFLRFASQ------RLELEEPLIFAGDYN 155 (281)
Q Consensus 129 ~~~~~l~~~l~~------~~~~~~~vIi~GDFN 155 (281)
+.+..+.+.+.- .......++++||||
T Consensus 159 ~~~~~I~~~l~f~~~~~~~~~~~d~vf~~GDlN 191 (310)
T smart00128 159 QDYKTILRALSFPERAELSQFDHDVVFWFGDLN 191 (310)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 899999986057876666666775059834763
No 21
>KOG0566 consensus
Probab=99.30 E-value=9.1e-12 Score=85.46 Aligned_cols=143 Identities=22% Similarity=0.290 Sum_probs=73.8
Q ss_pred CEEEEEEECCHHH-HHHHHHHHHHHH-------CCCE--EEEEEE-E--------CCH--HHC-C---HHHHHHC--CCE
Q ss_conf 0799871031888-899899999872-------8988--999856-5--------794--458-9---7787328--978
Q gi|254780288|r 4 VTVATWNVNSIRA-RIHNLAAWIKEN-------NPDI--ICLQET-K--------TED--KNF-P---FETLQSL--NYH 56 (281)
Q Consensus 4 lrI~TwNinglr~-r~~~l~~~l~~~-------~pDI--i~LQEv-k--------~~~--~~~-~---~~~~~~~--gy~ 56 (281)
+=+.||||||-.+ ....+.+||-.. -||| |++||+ - +.. ..+ . ...+..+ .|-
T Consensus 539 IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~As~tk~~~Wee~i~~~Ln~~~~kYv 618 (1080)
T KOG0566 539 IFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSASTTKRRFWEEKILKTLNRYKNKYV 618 (1080)
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99986642685564356687643643467747767679986043211271213226817889999999998657788659
Q ss_pred EEEEECCCCCCEEEE--EE---ECC------EEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCC-CH
Q ss_conf 999304776514898--74---031------3786325556443233010110002320799963104667854431-01
Q gi|254780288|r 57 IETCGQKSYNGVAIL--SK---YQP------IEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITST-KY 124 (281)
Q Consensus 57 ~~~~~~k~~~GvaIl--sk---~~~------~~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~-~~ 124 (281)
....++ -.||+++ .| .|- ..+.++|++-.- +.| .+..++......|-+++-|+-+|..--.+ +.
T Consensus 619 lL~s~Q--lvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tg-NKG-AVAIrf~~~~TsfCFv~SHlAAG~snv~ERn~ 694 (1080)
T KOG0566 619 LLRSEQ--LVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATG-NKG-AVAIRFVYHATSFCFVCSHLAAGQSNVEERNE 694 (1080)
T ss_pred EEEHHH--HHEEEEEEEECCCCCCHHHHCCCCEEECCCCCCCC-CCC-EEEEEEEECCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 986255--00125899975333622331023035415566357-775-18999996465279985000155440766420
Q ss_pred HHHHHHHHHHHHHH----HHHHCCCCHHHHHHHCC
Q ss_conf 23677776553322----23201476000011014
Q gi|254780288|r 125 DDKISWIKRFLRFA----SQRLELEEPLIFAGDYN 155 (281)
Q Consensus 125 ~~k~~~~~~l~~~l----~~~~~~~~~vIi~GDFN 155 (281)
++ ..+.+-| ...+.....+++|||||
T Consensus 695 DY-----~tI~r~l~Fp~Gr~I~~HD~ifW~GDFN 724 (1080)
T KOG0566 695 DY-----KTIARKLRFPRGRMIFSHDYIFWLGDFN 724 (1080)
T ss_pred HH-----HHHHHHCCCCCCCCCCCCCEEEEECCCC
T ss_conf 49-----9998756065775135776289833544
No 22
>KOG1294 consensus
Probab=97.86 E-value=2.1e-05 Score=49.68 Aligned_cols=150 Identities=21% Similarity=0.169 Sum_probs=87.7
Q ss_pred CCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 43233010110002320799963104667854431012367777655332223201476000011014686742000012
Q gi|254780288|r 88 LDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPI 167 (281)
Q Consensus 88 ~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~ 167 (281)
.+.+||++.... ..+.++++|.|...+....+ +..|+..|....+...+++.++++ ||.+-+.| +-+
T Consensus 9 ~~~~~~~~~~~k----~~~~~~~v~~~~~~~e~~~~---~~~~~~~l~~r~~~~~~~g~~~~~----~i~~~~i~--~~~ 75 (335)
T KOG1294 9 LDSEGRCVIVDK----EMFVLINVYCPRNSPEISKR---RLRFAKVLHYRVEKLLKQGNRKVL----NICPWDIA--GLE 75 (335)
T ss_pred HHCCCCEEEEEC----CCCCCCCEECCCCCCCCHHH---HHHHHHHHHHHHHHHHHHCCEEEE----ECCCHHHH--HHH
T ss_conf 221587042000----23321010042347743333---012466778878877770790476----22864565--456
Q ss_pred HCCCCCCC---CHHHHHHHHHCCCCCH-HHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCEEEEC
Q ss_conf 10487344---6345565321033100-0000133788872003578767525577713569994778983332028712
Q gi|254780288|r 168 IWENDACF---TLEVRQSFQKLQNMGF-TDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDT 243 (281)
Q Consensus 168 ~~~~~~~~---~~~er~~~~~l~~~gl-~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~~I~~ 243 (281)
.+....++ ..+.++ +..+.+.++ +|..+..++..+.||.|-.......-+.+-++||+.+.+.+. ..
T Consensus 76 ~~~~~~~~~~~~~~l~d-~~~~~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~~v--------~~ 146 (335)
T KOG1294 76 ACEKFSGDPEISSELRD-LQCLLETKCTIDSGPCSHPTEKGYTHSLLSCASKKDGYSGEIDYSKFKPLKV--------HY 146 (335)
T ss_pred HHHCCCCCHHCCCCCHH-HHHHHHCCCEECCCCCEECCCCCCCCCEEECCCCCCCCCCEEEEEECCCCEE--------EE
T ss_conf 55334654100200123-5545322530046743012667734522524656678521033341122046--------54
Q ss_pred HHHCCCCCCCCCCEEEEE
Q ss_conf 220686767622199999
Q gi|254780288|r 244 KPRGWTKPSDHTPVIVSL 261 (281)
Q Consensus 244 ~~~~~~~~SDH~Pv~~~l 261 (281)
. .+...|||+|+.+.+
T Consensus 147 ~--~~~~~s~h~~~g~~i 162 (335)
T KOG1294 147 G--FGAMGSDHRPVGRVI 162 (335)
T ss_pred C--CCCCCCCCCCCCEEE
T ss_conf 3--666677668554178
No 23
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=97.62 E-value=6.3e-05 Score=47.01 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=33.5
Q ss_pred EECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH----HHHCCCCHHHHHHHCC
Q ss_conf 1011000232079996310466785443101236777765533222----3201476000011014
Q gi|254780288|r 94 FIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFAS----QRLELEEPLIFAGDYN 155 (281)
Q Consensus 94 ~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~----~~~~~~~~vIi~GDFN 155 (281)
.+..+++.+...+-++|.|+-+|.. .++.|..-+..+..-+. ..+.....++++||||
T Consensus 155 av~i~~~~~~t~~cFv~shlaag~~----N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlN 216 (460)
T COG5411 155 AVAIRFNYERTSFCFVNSHLAAGVN----NIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLN 216 (460)
T ss_pred CCCEEEEEECCCCEEEECCHHCCCC----CHHHHHHHHHHHHHHEECCCCCEECCCCEEEEECCCC
T ss_conf 3212687522772899630100246----6888777888788760057774523652399951567
No 24
>KOG1976 consensus
Probab=93.04 E-value=0.093 Score=29.20 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=43.2
Q ss_pred CCEECCCCCCCCCEEEEEEEECCCC-CCCC----C-CCH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 3010110002320799963104667-8544----3-101-236777765533222320147600001101468674200
Q gi|254780288|r 92 ARFIEATFTINTQTLRIGNLYLPHG-NPIT----S-TKY-DDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDC 163 (281)
Q Consensus 92 ~R~i~~~i~~~~~~i~v~n~y~P~g-~~~~----~-~~~-~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~ 163 (281)
.+++.+++.+.+..+.++|+|+=+. +.+. + ..+ ..|.+.++-+++.+...--....++|.||||.-..+.++
T Consensus 157 kg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~~~~~~~fVfGdfNfrLds~s~ 235 (391)
T KOG1976 157 KGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEGLRNDAIFVFGDFNFRLDSTSL 235 (391)
T ss_pred CCCCCEEEEECCCEEEEEEHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH
T ss_conf 1654004898373555653012223566665137814655557889999999987630475289996134421052889
No 25
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=82.56 E-value=1.8 Score=21.97 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=37.5
Q ss_pred EECCCCCCCCCEEEEEEEECCCCCC-CC----CCC-H-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf 1011000232079996310466785-44----310-1-23677776553322232014760000110146
Q gi|254780288|r 94 FIEATFTINTQTLRIGNLYLPHGNP-IT----STK-Y-DDKISWIKRFLRFASQRLELEEPLIFAGDYNI 156 (281)
Q Consensus 94 ~i~~~i~~~~~~i~v~n~y~P~g~~-~~----~~~-~-~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~ 156 (281)
++...+.++...+.++|+|+=+... .. .+. + -.|.+-+...+..+........|..|-||||+
T Consensus 70 fLllslrlgtvv~n~~NVHLfhD~~N~~A~~~sPS~y~~~R~rAl~e~laec~a~v~p~~PlFIFGDfN~ 139 (356)
T PTZ00312 70 FLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNV 139 (356)
T ss_pred EEEEEEEECCEEEEEEEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCE
T ss_conf 4899998476899888888742664067886199720277999999999986520488997589524413
No 26
>PRK10438 hypothetical protein; Provisional
Probab=80.90 E-value=2.9 Score=20.83 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=28.9
Q ss_pred CCCCEEEEEEECC----HHHHHHHHHHHHHH-HCCCEEEEEEE
Q ss_conf 9700799871031----88889989999987-28988999856
Q gi|254780288|r 1 MSVVTVATWNVNS----IRARIHNLAAWIKE-NNPDIICLQET 38 (281)
Q Consensus 1 m~~lrI~TwNing----lr~r~~~l~~~l~~-~~pDIi~LQEv 38 (281)
|++|||+-.-.+. ..+.++.+..+|++ ..+|+|+|-|.
T Consensus 1 M~~mkial~Q~~~~~~D~~~Nl~~~~~~i~~a~gadlivlPEl 43 (256)
T PRK10438 1 MSGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEM 43 (256)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 9977899995667637999999999999974549999990875
No 27
>TIGR00683 nanA N-acetylneuraminate lyase; InterPro: IPR005264 N-acetylneuraminate lyase catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetyl-D-mannosamine. The enzyme plays an important role in the regulation of sialic acid metabolism in bacteria..
Probab=65.76 E-value=2.8 Score=20.88 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHCCCEEEEEE-EECC---H-HHCCHHHHHHCCCEEEEEECC
Q ss_conf 99899999872898899985-6579---4-458977873289789993047
Q gi|254780288|r 18 IHNLAAWIKENNPDIICLQE-TKTE---D-KNFPFETLQSLNYHIETCGQK 63 (281)
Q Consensus 18 ~~~l~~~l~~~~pDIi~LQE-vk~~---~-~~~~~~~~~~~gy~~~~~~~k 63 (281)
.+++.+..+++-=|=|.|== |-|- + .++ ......+||.+..+..+
T Consensus 56 ~~~~l~I~~~EAK~~I~LIA~VG~V~~~E~~~L-~~~A~~~GyD~~SAVTP 105 (294)
T TIGR00683 56 KKEVLRIVKDEAKDKIKLIAQVGSVSLKEAVEL-AKYAKRLGYDALSAVTP 105 (294)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHH-HHHHHHHCCCEEECCCC
T ss_conf 999999998730250222101052037889999-99888736711120366
No 28
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=65.15 E-value=0.97 Score=23.49 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=16.7
Q ss_pred CCCHHHHHHHCC--CCCCCCCCHH
Q ss_conf 476000011014--6867420000
Q gi|254780288|r 144 LEEPLIFAGDYN--IIPQPHDCYN 165 (281)
Q Consensus 144 ~~~~vIi~GDFN--~a~~~~D~~~ 165 (281)
..+.+.|.||+= +++...|+|.
T Consensus 220 ~~~~I~i~gDLpv~va~~saDvW~ 243 (520)
T COG1640 220 NDMGIGIIGDLPVGVAQDSADVWA 243 (520)
T ss_pred HHCCCEEEECCCCEECCCCHHHHC
T ss_conf 846924751244325677252421
No 29
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=63.84 E-value=9.9 Score=17.81 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 88998999998728988999856
Q gi|254780288|r 16 ARIHNLAAWIKENNPDIICLQET 38 (281)
Q Consensus 16 ~r~~~l~~~l~~~~pDIi~LQEv 38 (281)
.+.+.+++.-......||||||+
T Consensus 90 ~~i~~~i~~Aa~~gvni~c~qe~ 112 (363)
T cd07587 90 DRIKKIIEAAAMAGVNIICFQEA 112 (363)
T ss_pred HHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 99999999999759879984001
No 30
>pfam02446 Glyco_hydro_77 4-alpha-glucanotransferase. These enzymes EC:2.4.1.25 transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan.
Probab=62.49 E-value=0.73 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHCCC--CCCCCCCH-HHHHC
Q ss_conf 14760000110146--86742000-01210
Q gi|254780288|r 143 ELEEPLIFAGDYNI--IPQPHDCY-NPIIW 169 (281)
Q Consensus 143 ~~~~~vIi~GDFN~--a~~~~D~~-~~~~~ 169 (281)
..++.+-|.||+=+ ++...|+| +++.+
T Consensus 202 A~~~gI~L~gDlpigv~~dsaDvW~~~~~F 231 (494)
T pfam02446 202 ANDKGIGIKGDLPIYVAYDSADVWANPDLF 231 (494)
T ss_pred HHHCCCEEEEECCEEECCCCHHHHCCHHHH
T ss_conf 983798798743205789848887599787
No 31
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=61.13 E-value=4.5 Score=19.74 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHCC
Q ss_conf 7777655332223201476000011014
Q gi|254780288|r 128 ISWIKRFLRFASQRLELEEPLIFAGDYN 155 (281)
Q Consensus 128 ~~~~~~l~~~l~~~~~~~~~vIi~GDFN 155 (281)
..|.+.|+. .++++..|||.|=.=
T Consensus 187 ~sF~~ALra----ALReDPDvILiGE~R 210 (350)
T TIGR01420 187 LSFANALRA----ALREDPDVILIGEMR 210 (350)
T ss_pred HHHHHHHHH----HHCCCCCEEEEECCC
T ss_conf 579999768----410289889982556
No 32
>TIGR01975 isoAsp_dipep beta-aspartyl peptidase; InterPro: IPR010229 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of proteins include metallopeptidases belonging to the MEROPS peptidase family M38 (clan MJ, beta-aspartyl dipeptidase family). This entry includes the beta-aspartyl dipeptidase from Escherichia coli, (3.4.19.5 from EC, IadA), which degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This entry also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that may have an equivalent in function. This family shows homology to dihydroorotases. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerisation, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase..
Probab=52.17 E-value=3.1 Score=20.67 Aligned_cols=20 Identities=5% Similarity=-0.009 Sum_probs=11.0
Q ss_pred EEEEEE--CHHHHHHHHCEEEE
Q ss_conf 569994--77898333202871
Q gi|254780288|r 223 IDHIML--SPEATSLLHSARID 242 (281)
Q Consensus 223 ID~il~--s~~l~~~v~~~~I~ 242 (281)
+-++.+ ...|...|+++-+.
T Consensus 300 l~~~~v~~~~sLf~~v~~av~~ 321 (391)
T TIGR01975 300 LKGLGVGSVESLFEEVREAVKE 321 (391)
T ss_pred EEEEEEECHHHHHHHHHHHHHH
T ss_conf 6335760416678999999851
No 33
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain; InterPro: IPR005972 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=51.61 E-value=11 Score=17.61 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=5.5
Q ss_pred EEEEEECHHH
Q ss_conf 5699947789
Q gi|254780288|r 223 IDHIMLSPEA 232 (281)
Q Consensus 223 ID~il~s~~l 232 (281)
+|..+-||.|
T Consensus 505 mD~a~n~P~W 514 (521)
T TIGR01282 505 MDMALNSPVW 514 (521)
T ss_pred HHHHHCCCCC
T ss_conf 6434307745
No 34
>KOG0808 consensus
Probab=48.09 E-value=20 Score=16.09 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 888998999998728988999856
Q gi|254780288|r 15 RARIHNLAAWIKENNPDIICLQET 38 (281)
Q Consensus 15 r~r~~~l~~~l~~~~pDIi~LQEv 38 (281)
-.|++.+.+.-+..-..||||||.
T Consensus 99 h~r~kaiieaaa~agvniiclqea 122 (387)
T KOG0808 99 HDRLKAIIEAAAVAGVNIICLQEA 122 (387)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 999999999987548657974012
No 35
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit; InterPro: IPR000438 Fatty acid synthesis involves a set of reactions, commencing with carboxylation of acetyl-CoA to malonyl-CoA. This is an irreversible reaction, catalysed by the acetyl-CoA carboxylase complex (6.4.1.2 from EC); a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- = Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA = Malonyl-CoA + Biotin carrier protein In the first step, biotin carboxylase catalyses the carboxylation of the carrier protein to form an intermediate. Next, the transcarboxylase complex transfers the carboxyl group from the intermediate to acetyl-CoA forming malonyl-CoA.; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=47.41 E-value=4.6 Score=19.67 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=13.7
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 0000110146867420000121048734
Q gi|254780288|r 147 PLIFAGDYNIIPQPHDCYNPIIWENDAC 174 (281)
Q Consensus 147 ~vIi~GDFN~a~~~~D~~~~~~~~~~~~ 174 (281)
.+-.+||+|+| .|+...+=+|
T Consensus 218 SFA~LGDL~iA-------EPkAlIGFAG 238 (292)
T TIGR00515 218 SFAMLGDLNIA-------EPKALIGFAG 238 (292)
T ss_pred HHHHHHHHHHH-------CCCCCCCCCC
T ss_conf 98764025441-------5642312787
No 36
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=46.20 E-value=18 Score=16.40 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=13.3
Q ss_pred HHHHHHHCCCEEEEEE
Q ss_conf 9999872898899985
Q gi|254780288|r 22 AAWIKENNPDIICLQE 37 (281)
Q Consensus 22 ~~~l~~~~pDIi~LQE 37 (281)
.+.|++++|||+.|-=
T Consensus 41 ~~~I~~q~PD~vvLDI 56 (270)
T TIGR02875 41 LELIKEQKPDVVVLDI 56 (270)
T ss_pred HHHHHHCCCCEEEECC
T ss_conf 9999608998999515
No 37
>KOG2126 consensus
Probab=40.28 E-value=19 Score=16.25 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
Q ss_conf 443101236777765533222320147600001101468
Q gi|254780288|r 119 ITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNII 157 (281)
Q Consensus 119 ~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a 157 (281)
.+++.+..|+.+++++.+.+-+..+.+--.+||||=-..
T Consensus 226 PdH~~M~~KL~qmD~vI~~ii~~mdedTlLvVmGDHGMt 264 (895)
T KOG2126 226 PDHPEMADKLVQMDRVINEIIKKMDEDTLLVVMGDHGMT 264 (895)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 999899999999999999999974467069983477877
No 38
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor; InterPro: IPR012781 Members of this family belong the lacI helix-turn-helix family of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterised members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.; GO: 0003677 DNA binding, 0006355 regulation of transcription DNA-dependent, 0009750 response to fructose stimulus, 0045449 regulation of transcription.
Probab=39.82 E-value=9.2 Score=17.99 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEEEEEECC
Q ss_conf 55564432330101100023207999631046
Q gi|254780288|r 83 LPGDDLDVQARFIEATFTINTQTLRIGNLYLP 114 (281)
Q Consensus 83 ~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P 114 (281)
+-.+.++.|.+++..-+.-..+.+-|.+++=|
T Consensus 97 CSDD~P~~E~~~~e~l~~Rq~DaLiVAs~~~p 128 (335)
T TIGR02417 97 CSDDNPDQEKKVIERLLARQVDALIVASCLPP 128 (335)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 17888134899999986167365884388776
No 39
>cd04758 Commd10 COMM_Domain containing protein 10. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=37.21 E-value=30 Score=15.11 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=27.8
Q ss_pred CCCCCCEEEEEEECHHHHHHHHCEEEE-C-HHHCCCCCCCCCCEEEEEECCC
Q ss_conf 557771356999477898333202871-2-2206867676221999995588
Q gi|254780288|r 216 SKNKGIRIDHIMLSPEATSLLHSARID-T-KPRGWTKPSDHTPVIVSLDIPE 265 (281)
Q Consensus 216 ~~n~G~RID~il~s~~l~~~v~~~~I~-~-~~~~~~~~SDH~Pv~~~l~lp~ 265 (281)
-.+.|||+|+.+.|.... ++....+. . ..++.+ .+.-+|.++|+.|+
T Consensus 120 L~dv~Wrl~~~~sSS~~~-k~k~P~~~L~L~v~~~d--~~~e~v~lE~t~~q 168 (186)
T cd04758 120 LEDVSWRLNLQMSSSTQA-KLKSPLAVLELGVTSED--GNLEKINLEFNHEE 168 (186)
T ss_pred CCCEEEEEEEEECCCHHH-HCCCCEEEEEEECCCCC--CCCCEEEEEECHHH
T ss_conf 130125885477302454-40687289984247899--88662799967999
No 40
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.67 E-value=26 Score=15.47 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=13.3
Q ss_pred HHHHHHHCCCCHHHHHHHCC
Q ss_conf 32223201476000011014
Q gi|254780288|r 136 RFASQRLELEEPLIFAGDYN 155 (281)
Q Consensus 136 ~~l~~~~~~~~~vIi~GDFN 155 (281)
.-+...++++..+|+.|-.-
T Consensus 189 ~aLraALReDPDVIlvGEmR 208 (353)
T COG2805 189 NALRAALREDPDVILVGEMR 208 (353)
T ss_pred HHHHHHHHCCCCEEEEECCC
T ss_conf 99999860299979982134
No 41
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.13 E-value=38 Score=14.53 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=11.0
Q ss_pred HHHHHCCCCHHHHHHHCC
Q ss_conf 223201476000011014
Q gi|254780288|r 138 ASQRLELEEPLIFAGDYN 155 (281)
Q Consensus 138 l~~~~~~~~~vIi~GDFN 155 (281)
+.+.+++...+|+.|..-
T Consensus 193 lkNtlRQaPDvI~IGEvR 210 (375)
T COG5008 193 LKNTLRQAPDVILIGEVR 210 (375)
T ss_pred HHHHHHCCCCEEEEEECC
T ss_conf 998775189869997304
No 42
>PRK05282 peptidase E; Validated
Probab=30.86 E-value=38 Score=14.50 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=4.3
Q ss_pred HHHHHCCCEE
Q ss_conf 7873289789
Q gi|254780288|r 48 ETLQSLNYHI 57 (281)
Q Consensus 48 ~~~~~~gy~~ 57 (281)
+.|..+|+.+
T Consensus 55 ~af~~lg~~v 64 (233)
T PRK05282 55 EVLAPLGIEV 64 (233)
T ss_pred HHHHHCCCEE
T ss_conf 9998669828
No 43
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=30.58 E-value=39 Score=14.47 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 8899899999872898899985
Q gi|254780288|r 16 ARIHNLAAWIKENNPDIICLQE 37 (281)
Q Consensus 16 ~r~~~l~~~l~~~~pDIi~LQE 37 (281)
.+++++++.+++++||+|++-=
T Consensus 66 ~~l~~~v~~~n~~~PDlVv~tG 87 (270)
T PRK11340 66 SLISDAIALGIEQKPDLILLGG 87 (270)
T ss_pred HHHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999998712999999867
No 44
>KOG0565 consensus
Probab=29.58 E-value=40 Score=14.37 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=14.1
Q ss_pred ECCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 0110002320799963104667854
Q gi|254780288|r 95 IEATFTINTQTLRIGNLYLPHGNPI 119 (281)
Q Consensus 95 i~~~i~~~~~~i~v~n~y~P~g~~~ 119 (281)
+...+......+-+++.|+.+|...
T Consensus 50 v~is~~~~~~~~~~v~~hl~~~~~~ 74 (145)
T KOG0565 50 VAISFVLSQTSFCFVISHLTSGVHK 74 (145)
T ss_pred EEEEEEECCCEEEEEEECCCCCCCC
T ss_conf 9999996487069999543665533
No 45
>cd04748 Commd COMM_Domain, a family of domains found at the C-terminus of HCarG, the copper metabolism gene MURR1 product, and related proteins. Presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB. Murr1/Commd1 is a protein involved in copper homeostasis, which has also been identified as a regulator of the human delta epithelial sodium channel. HCaRG, a nuclear protein that might be involved in cell proliferation, is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals.
Probab=29.04 E-value=41 Score=14.32 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=12.9
Q ss_pred CCCCEEEEEEECHHHHH
Q ss_conf 77713569994778983
Q gi|254780288|r 218 NKGIRIDHIMLSPEATS 234 (281)
Q Consensus 218 n~G~RID~il~s~~l~~ 234 (281)
+.+||+|+.+.|..+..
T Consensus 25 d~~Wrld~~~sS~~~~~ 41 (87)
T cd04748 25 DFDWRLDVQISSSSLAK 41 (87)
T ss_pred CEEEEEEEEECHHHHHH
T ss_conf 21458978993656764
No 46
>cd05785 DNA_polB_like2_exo A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=28.93 E-value=42 Score=14.31 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=5.9
Q ss_pred CCCHHHHHHHCCC
Q ss_conf 4760000110146
Q gi|254780288|r 144 LEEPLIFAGDYNI 156 (281)
Q Consensus 144 ~~~~vIi~GDFN~ 156 (281)
.-.|=||.| +|+
T Consensus 71 ~~dPDIItG-yNi 82 (207)
T cd05785 71 ERDPDVIEG-HNI 82 (207)
T ss_pred HCCCCEEEE-CCC
T ss_conf 739999986-798
No 47
>TIGR02104 pulA_typeI pullulanase, type I; InterPro: IPR011840 Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the entries in IPR011838 from INTERPRO and IPR011839 from INTERPRO but having a different domain architecture with shorter sequences. Members are called type I pullulanases ..
Probab=28.00 E-value=43 Score=14.21 Aligned_cols=31 Identities=16% Similarity=0.448 Sum_probs=25.0
Q ss_pred EEEEECCHH---------HHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 987103188---------8899899999872898899985
Q gi|254780288|r 7 ATWNVNSIR---------ARIHNLAAWIKENNPDIICLQE 37 (281)
Q Consensus 7 ~TwNinglr---------~r~~~l~~~l~~~~pDIi~LQE 37 (281)
-=|||+|.| ..+..|.+-|.+.||.||.+=|
T Consensus 330 ~EYniDGFRFDLMGihD~~TMn~ir~~l~~Idp~IlLyGE 369 (655)
T TIGR02104 330 KEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPSILLYGE 369 (655)
T ss_pred EEECCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 0104676201012343699999999998533983799745
No 48
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773 Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=26.41 E-value=27 Score=15.35 Aligned_cols=14 Identities=14% Similarity=0.646 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 67777655332223
Q gi|254780288|r 127 KISWIKRFLRFASQ 140 (281)
Q Consensus 127 k~~~~~~l~~~l~~ 140 (281)
+.+|+..|.+.+++
T Consensus 213 s~eWLq~l~~lCr~ 226 (413)
T TIGR02407 213 SKEWLQRLEKLCRR 226 (413)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 35579999999986
No 49
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=24.23 E-value=49 Score=13.92 Aligned_cols=15 Identities=47% Similarity=0.585 Sum_probs=7.7
Q ss_pred EEEEEECCCCCCCCC
Q ss_conf 999995588776666
Q gi|254780288|r 257 VIVSLDIPEPRKKQQ 271 (281)
Q Consensus 257 v~~~l~lp~~~~~~~ 271 (281)
|++.|||.+.|.||+
T Consensus 249 vMS~LDIaEkR~PQD 263 (577)
T TIGR02538 249 VMSRLDIAEKRIPQD 263 (577)
T ss_pred HHHCCCCCCCCCCCC
T ss_conf 973267122456878
No 50
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=23.68 E-value=52 Score=13.75 Aligned_cols=37 Identities=5% Similarity=0.175 Sum_probs=28.1
Q ss_pred CCCCEEE-EEEECCHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9700799-871031888899899999872898899985
Q gi|254780288|r 1 MSVVTVA-TWNVNSIRARIHNLAAWIKENNPDIICLQE 37 (281)
Q Consensus 1 m~~lrI~-TwNinglr~r~~~l~~~l~~~~pDIi~LQE 37 (281)
|++|||+ +=++.|--.+.+++.+..+..++|++++-=
T Consensus 1 ~~~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaG 38 (226)
T COG2129 1 IKKMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAG 38 (226)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 97405999840333357899999987603688899953
No 51
>TIGR00373 TIGR00373 conserved hypothetical protein TIGR00373; InterPro: IPR005241 This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. .
Probab=23.30 E-value=44 Score=14.17 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=17.9
Q ss_pred HHHHHHHCCCCCHHHHCCCCCCCCCCEEC
Q ss_conf 55653210331000000133788872003
Q gi|254780288|r 179 VRQSFQKLQNMGFTDAIRATHDTHHLYSF 207 (281)
Q Consensus 179 er~~~~~l~~~gl~D~~r~~~~~~~~yT~ 207 (281)
.|..+-+|-++|++|--|..-++.+-|||
T Consensus 47 vRk~Ly~LYdagladYkR~kD~eT~Wy~Y 75 (168)
T TIGR00373 47 VRKLLYKLYDAGLADYKRRKDDETNWYEY 75 (168)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCEEE
T ss_conf 88999987303010002136898885236
No 52
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=21.77 E-value=35 Score=14.74 Aligned_cols=35 Identities=29% Similarity=0.564 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCC
Q ss_conf 1012367777655332223201476000011014686742
Q gi|254780288|r 122 TKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPH 161 (281)
Q Consensus 122 ~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~ 161 (281)
..+..|.+|+.....++.- ..+|+||.=|+.+.+.
T Consensus 97 ~s~~dK~eWl~E~FPFi~~-----qn~vfCgnKnivkaDi 131 (180)
T COG4502 97 KSCEDKGEWLKEKFPFISY-----QNIVFCGNKNIVKADI 131 (180)
T ss_pred HHHHHHHHHHHHHCCCCCH-----HHEEEECCCCEEEEEE
T ss_conf 1577788999977877881-----4479966888177657
Done!