HHsearch results for GI: 254780288 and protein with PDBid: 1hd7_A
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 2isi_A
Probab=100.00 E-value=0 Score=350.10 Aligned_cols=252 Identities=29% Similarity=0.541 Sum_probs=197.6
Q ss_pred CCCEEEEEEECCHHHHHH-HHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEE----EECCCCCCEEEEEEECC
Q ss_conf 700799871031888899-8999998728988999856579445897787328978999----30477651489874031
Q gi|254780288|r 2 SVVTVATWNVNSIRARIH-NLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIET----CGQKSYNGVAILSKYQP 76 (281)
Q Consensus 2 ~~lrI~TwNinglr~r~~-~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~----~~~k~~~GvaIlsk~~~ 76 (281)
++|||+||||||||++++ .+.+||++++||||||||||+.+.++..+.....||.+.+ .+.++++|+++++|..+
T Consensus 60 ~~mki~swNvnGlr~~~k~~~~~~i~~~~pDIi~LQE~k~~~~~~~~~l~~~~g~~~~y~~~~~~~~~~~~~~~~~k~~~ 139 (318)
T 1hd7_A 60 ATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCP 139 (318)
T ss_dssp CCEEEEEEECSSHHHHHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC-----CCCEEEEESSCC
T ss_pred CCEEEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCCC
T ss_conf 87699999838857611344899997589958999835378012888889517996489997558777552235732686
Q ss_pred EEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf 37863255564432330101100023207999631046678544310123677776553322232014760000110146
Q gi|254780288|r 77 IEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNI 156 (281)
Q Consensus 77 ~~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~ 156 (281)
..+.........+.++|++.+.+ ..+.++++|+|+.+. ....+.++..+...+..... .....+++|+|||||+
T Consensus 140 ~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~Gd~N~ 213 (318)
T 1hd7_A 140 LKVSYGIGDEEHDQEGRVIVAEF----DSFVLVTAYVPNAGR-GLVRLEYRQRWDEAFRKFLK-GLASRKPLVLCGDLNV 213 (318)
T ss_dssp SEEEESCSCGGGSSSSCEEEEEC----SSCEEEEEECCCCCG-GGTTHHHHHHHHHHHHHHHH-HHHHHSCEEEEEECSC
T ss_pred EEEEECCCCCCCCCEEEEEEEEE----EEEEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHH-HHCCCCEEEEECCCCC
T ss_conf 14674367665453005899874----359999997146777-53107888887777553233-2046433886044445
Q ss_pred CCCCCCCHHHHHCCCCCCCCHHHHHHHHHCC-CCCHHHHCCCCCCC-CCCEECCCCCCCCCCCCCCCEEEEEEECHHHHH
Q ss_conf 8674200001210487344634556532103-31000000133788-872003578767525577713569994778983
Q gi|254780288|r 157 IPQPHDCYNPIIWENDACFTLEVRQSFQKLQ-NMGFTDAIRATHDT-HHLYSFWDYYADSWSKNKGIRIDHIMLSPEATS 234 (281)
Q Consensus 157 a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~-~~gl~D~~r~~~~~-~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~ 234 (281)
++.+.|.+++.......++.++|+..|..++ +.||+|+||.+||. ++.||||+|+.++|.+|.||||||||+|+.|.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~gl~D~~r~~~p~~~~~yT~ws~~~~~~~~n~g~RIDyilvS~~l~~ 293 (318)
T 1hd7_A 214 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP 293 (318)
T ss_dssp CCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGG
T ss_pred CCCHHHHCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECHHHHH
T ss_conf 87366414855512322341466778999985257642002015899995500066567653798656589996858982
Q ss_pred HHHCEEEECHHHCCCCCCCCCCEEEEEEC
Q ss_conf 33202871222068676762219999955
Q gi|254780288|r 235 LLHSARIDTKPRGWTKPSDHTPVIVSLDI 263 (281)
Q Consensus 235 ~v~~~~I~~~~~~~~~~SDH~Pv~~~l~l 263 (281)
++.++.|.... .+|||+||+++|+|
T Consensus 294 ~v~~~~i~~~~----~~SDH~PV~l~L~l 318 (318)
T 1hd7_A 294 ALCDSKIRSKA----LGSDHCPITLYLAL 318 (318)
T ss_dssp GEEEEEECTTC----CSSSBCCEEEEECC
T ss_pred HCCEEEECCCC----CCCCCCCEEEEEEC
T ss_conf 33178985899----99984168999969