HHsearch results for GI: 254780288 and protein with PDBid: 1sr4_B
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.95 E-value=2.4e-27 Score=171.76 Aligned_cols=222 Identities=18% Similarity=0.086 Sum_probs=117.6
Q ss_pred CCCCEEEEEEECCHHH-----HHHHHHHH-HHHHCCCEEEEEEEECCHHHC--CHHHHHHCCC--E--------------
Q ss_conf 9700799871031888-----89989999-987289889998565794458--9778732897--8--------------
Q gi|254780288|r 1 MSVVTVATWNVNSIRA-----RIHNLAAW-IKENNPDIICLQETKTEDKNF--PFETLQSLNY--H-------------- 56 (281)
Q Consensus 1 m~~lrI~TwNinglr~-----r~~~l~~~-l~~~~pDIi~LQEvk~~~~~~--~~~~~~~~gy--~-------------- 56 (281)
++.+||+||||+++.. ....+.++ +...+|||||||||+...... ........++ .
T Consensus 2 ~~~frv~TwNi~~~~~~~~~~~~~~~~~~~~~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (261)
T 1sr4_B 2 LSDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNM 81 (261)
T ss_dssp GGGSCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSSCCE
T ss_pred CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCE
T ss_conf 98778999979958787555422899999975679799999916742341156887766417653301220256567751
Q ss_pred -EEE-EE---CCCCCCEEEEEEECCEEEEECCCCCCCCCCCCEE-CCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf -999-30---4776514898740313786325556443233010-11000232079996310466785443101236777
Q gi|254780288|r 57 -IET-CG---QKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFI-EATFTINTQTLRIGNLYLPHGNPITSTKYDDKISW 130 (281)
Q Consensus 57 -~~~-~~---~k~~~GvaIlsk~~~~~v~~~~~~~~~d~~~R~i-~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~ 130 (281)
..+ .. .+.+.|++|+||.|+.+.... .....+...|.+ .+.+ ....++++|+.+....+... .....
T Consensus 82 ~~~~~~~~~~~~~~~g~~ils~~~~~~~~~~-~~~~~~~~~R~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (261)
T 1sr4_B 82 VYIYYSRLDVGANRVNLAIVSRRQADEAFIV-HSDSSVLQSRPAVGIRI----GTDVFFTVHALATGGSDAVS--LIRNI 154 (261)
T ss_dssp EEEEEECCCTTTSCSCEEEEESSCCSEEEEE-CCCCCSSCCCCEEEEEE----TTEEEEEEECCTTTTTTHHH--HHHHH
T ss_pred EEEEEECCCCCCCEEEEEEEECCCCCCEEEC-CCCCCCCCCCCEEEEEE----ECCCEEEEEEECCCCCCCHH--HHHHH
T ss_conf 5899752345564243799979876333783-68976656530599998----13522338864588753489--99999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCC
Q ss_conf 76553322232014760000110146867420000121048734463455653210331000000133788872003578
Q gi|254780288|r 131 IKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDY 210 (281)
Q Consensus 131 ~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~ 210 (281)
...+..........+.|+|+|||||+.|.+ ..+..+.+.|+.|+++..++.. .||++
T Consensus 155 ~~~~~~~~~~~~~~~~~~il~GDfN~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~--~t~~~- 211 (261)
T 1sr4_B 155 FTTFNSSSSPPERRVYSWMVVGDFNRAPAN--------------------LEVALRQEPAVSENTIIIAPTE--PTHRS- 211 (261)
T ss_dssp HHHHHC---CGGGGGCEEEEEEECSSCHHH--------------------HHHHHTTSHHHHHTCEEECCSS--CSBTT-
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCH--------------------HHHHHHHHCCCCCCEEECCCCC--CCCCC-
T ss_conf 999999998752568876984345887521--------------------5789876135544132047777--85698-
Q ss_pred CCCCCCCCCCCEEEEEEECHHHHHHHHC------EEEECHHHCCCCCCCCCCEEEEE
Q ss_conf 7675255777135699947789833320------28712220686767622199999
Q gi|254780288|r 211 YADSWSKNKGIRIDHIMLSPEATSLLHS------ARIDTKPRGWTKPSDHTPVIVSL 261 (281)
Q Consensus 211 ~~~~~~~n~G~RID~il~s~~l~~~v~~------~~I~~~~~~~~~~SDH~Pv~~~l 261 (281)
+.||||||+++........ +.+.........+|||+||-..+
T Consensus 212 ---------~~~iD~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~~ 259 (261)
T 1sr4_B 212 ---------GNILDYAILHDAHLPRREQARERIGASLMLNQLRSQITSDHFPVSFVR 259 (261)
T ss_dssp ---------SCCCEEEEEECTTSCTTCGGGCCEEEEECGGGCSSCCSSSBCCEEEEE
T ss_pred ---------CCCEEEEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCCCHHHEEEE
T ss_conf ---------985748997670103032144202334412334799628765038884