HHsearch results for GI: 254780288 and protein with PDBid: 2jc4_A

>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=100.00  E-value=0  Score=339.14  Aligned_cols=256  Identities=36%  Similarity=0.666  Sum_probs=225.6

Q ss_pred             CEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEEECC
Q ss_conf             07998710318888998999998728988999856579445897787328978999304776514898740313786325
Q gi|254780288|r    4 VTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHL   83 (281)
Q Consensus         4 lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v~~~~   83 (281)
                      |||+||||||+|+|++++.++|++++||||||||||+.+++++.+.+..+++++.+++.....|.+++++.++.......
T Consensus         1 mKi~T~Nvng~r~r~~~~~~~i~~~~pDIv~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (256)
T 2jc4_A            1 MKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQKTYNGVAIVSRSVPQDVHFGL   80 (256)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEECCSSSCCEEEEESSCCEEEEESC
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCCCCC
T ss_conf             98999981779999999999998489989999865558000897897212671354165455573278840664111246


Q ss_pred             CCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC
Q ss_conf             55644323301011000232079996310466785443101236777765533222320147600001101468674200
Q gi|254780288|r   84 PGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDC  163 (281)
Q Consensus        84 ~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~  163 (281)
                      .....+..+|.+.+.+    ....++++|+|++...+..++.+|..+...+.....+....+++++++||||+++.+.++
T Consensus        81 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~n~~~~~~~~  156 (256)
T 2jc4_A           81 PALPDDPQRRVIAATV----SGVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADC  156 (256)
T ss_dssp             TTSTTCCSCCEEEEEE----TTEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGB
T ss_pred             CCCCCCCCCEEEEEEC----CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf             8887775515999850----877999997569987642779999999999998888762248874303432358648776


Q ss_pred             HHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCEEEEC
Q ss_conf             00121048734463455653210331000000133788872003578767525577713569994778983332028712
Q gi|254780288|r  164 YNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDT  243 (281)
Q Consensus       164 ~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~~I~~  243 (281)
                      ..+..+.+..++.+++..+...+.+.|++|+||..+|+...+|||+++.+.+.+|.|+||||||+|+++.++++++.|++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyI~~S~~l~~~v~~~~v~~  236 (256)
T 2jc4_A          157 YDPEKWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDL  236 (256)
T ss_dssp             SSGGGGTTCTTSCHHHHHHHHHHHTTTCEEHHHHHCCSSCCCCBCCTTTTHHHHTCCBCCEEEEECHHHHTTEEEEEECH
T ss_pred             HCHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHCEEEEEEE
T ss_conf             07343014545898999988754315738988761389876325787677241688546689996859973326999973


Q ss_pred             HHHCCCCCCCCCCEEEEEEC
Q ss_conf             22068676762219999955
Q gi|254780288|r  244 KPRGWTKPSDHTPVIVSLDI  263 (281)
Q Consensus       244 ~~~~~~~~SDH~Pv~~~l~l  263 (281)
                      +.+++..+|||+||+++|++
T Consensus       237 ~~~~~~~~SDH~PV~~~l~~  256 (256)
T 2jc4_A          237 ETRALERPSDHAPVTAEFDW  256 (256)
T ss_dssp             HHHTSSSCCSBCCEEEEECC
T ss_pred             CCCCCCCCCCCCCEEEEEEC
T ss_conf             12479999982268999969