HHsearch results for GI: 254780288 and protein with PDBid: 2jc4_A
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=100.00 E-value=0 Score=339.14 Aligned_cols=256 Identities=36% Similarity=0.666 Sum_probs=225.6
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEEECC
Q ss_conf 07998710318888998999998728988999856579445897787328978999304776514898740313786325
Q gi|254780288|r 4 VTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHL 83 (281)
Q Consensus 4 lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v~~~~ 83 (281)
|||+||||||+|+|++++.++|++++||||||||||+.+++++.+.+..+++++.+++.....|.+++++.++.......
T Consensus 1 mKi~T~Nvng~r~r~~~~~~~i~~~~pDIv~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (256)
T 2jc4_A 1 MKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQKTYNGVAIVSRSVPQDVHFGL 80 (256)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEECCSSSCCEEEEESSCCEEEEESC
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 98999981779999999999998489989999865558000897897212671354165455573278840664111246
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 55644323301011000232079996310466785443101236777765533222320147600001101468674200
Q gi|254780288|r 84 PGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDC 163 (281)
Q Consensus 84 ~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~ 163 (281)
.....+..+|.+.+.+ ....++++|+|++...+..++.+|..+...+.....+....+++++++||||+++.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~n~~~~~~~~ 156 (256)
T 2jc4_A 81 PALPDDPQRRVIAATV----SGVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADC 156 (256)
T ss_dssp TTSTTCCSCCEEEEEE----TTEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGB
T ss_pred CCCCCCCCCEEEEEEC----CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 8887775515999850----877999997569987642779999999999998888762248874303432358648776
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCEEEEC
Q ss_conf 00121048734463455653210331000000133788872003578767525577713569994778983332028712
Q gi|254780288|r 164 YNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDT 243 (281)
Q Consensus 164 ~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~~I~~ 243 (281)
..+..+.+..++.+++..+...+.+.|++|+||..+|+...+|||+++.+.+.+|.|+||||||+|+++.++++++.|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyI~~S~~l~~~v~~~~v~~ 236 (256)
T 2jc4_A 157 YDPEKWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDL 236 (256)
T ss_dssp SSGGGGTTCTTSCHHHHHHHHHHHTTTCEEHHHHHCCSSCCCCBCCTTTTHHHHTCCBCCEEEEECHHHHTTEEEEEECH
T ss_pred HCHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHCEEEEEEE
T ss_conf 07343014545898999988754315738988761389876325787677241688546689996859973326999973
Q ss_pred HHHCCCCCCCCCCEEEEEEC
Q ss_conf 22068676762219999955
Q gi|254780288|r 244 KPRGWTKPSDHTPVIVSLDI 263 (281)
Q Consensus 244 ~~~~~~~~SDH~Pv~~~l~l 263 (281)
+.+++..+|||+||+++|++
T Consensus 237 ~~~~~~~~SDH~PV~~~l~~ 256 (256)
T 2jc4_A 237 ETRALERPSDHAPVTAEFDW 256 (256)
T ss_dssp HHHTSSSCCSBCCEEEEECC
T ss_pred CCCCCCCCCCCCCEEEEEEC
T ss_conf 12479999982268999969