HHsearch results for GI: 254780288 and protein with PDBid: 2jc5_A
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=100.00 E-value=8.4e-45 Score=269.92 Aligned_cols=254 Identities=26% Similarity=0.430 Sum_probs=182.7
Q ss_pred CCEEEEEEECCHHHHHH-HHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEE--EECCCCCCEEEEEEECCEEE
Q ss_conf 00799871031888899-8999998728988999856579445897787328978999--30477651489874031378
Q gi|254780288|r 3 VVTVATWNVNSIRARIH-NLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIET--CGQKSYNGVAILSKYQPIEI 79 (281)
Q Consensus 3 ~lrI~TwNinglr~r~~-~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~--~~~k~~~GvaIlsk~~~~~v 79 (281)
||||+||||||+|++.+ .+.++|++++||||||||||+.+.++..+......+.... ..+.+..|+|++||+++..+
T Consensus 1 ~mki~swNv~G~~~~~~~~~~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~ 80 (259)
T 2jc5_A 1 MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNV 80 (259)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHHTTCSEEEEECCCCCGGGCCHHHHSGGGCEEEEECCSSTTCCCEEEEESSCCSEE
T ss_pred CEEEEEEECCCHHHHHHCHHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCEEE
T ss_conf 91999998346777566309999986799999997361681107887861557603552023576505899843786355
Q ss_pred EECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
Q ss_conf 63255564432330101100023207999631046678544310123677776553322232014760000110146867
Q gi|254780288|r 80 VTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQ 159 (281)
Q Consensus 80 ~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~ 159 (281)
....+.+..+.+.++....+ +++.+.++++|+..... .....|.+....+..............++++.++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (259)
T 2jc5_A 81 QIGMGIEEFDREGRFVRCDF----GRLSVISLYLPSGSSAE-ERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQ 155 (259)
T ss_dssp EESCSCHHHHTTCCEEEEEE----TTEEEEEEECCCCTTCH-HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCS
T ss_pred EECCCCCCCCCHHEEEEEEE----CCEEEEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 64368875460215677783----98999998744676334-31367788999999999876531543201465334722
Q ss_pred CCCCHHHHHCCCCCCCCHHHHHHHH-HCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHC
Q ss_conf 4200001210487344634556532-103310000001337888720035787675255777135699947789833320
Q gi|254780288|r 160 PHDCYNPIIWENDACFTLEVRQSFQ-KLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHS 238 (281)
Q Consensus 160 ~~D~~~~~~~~~~~~~~~~er~~~~-~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~ 238 (281)
..+..+...+...+++...++.... .+...++.|.+|..++....+|||+++.+++.+|+|+||||||+|+.+.+++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RIDyIl~s~~l~~~~~~ 235 (259)
T 2jc5_A 156 NIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVS 235 (259)
T ss_dssp GGGBSCSTTCTTSTTSCHHHHHHHHHHHHTTCCEEHHHHHCTTCCCCCEESCSSHHHHTTCEECCEEEEECHHHHTTEEE
T ss_pred HHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECHHHHHHCEE
T ss_conf 65432735413445667044312456665057631232115777875001687886347998365899967189622349
Q ss_pred EEEECHHHCCCCCCCCCCEEEEEECCC
Q ss_conf 287122206867676221999995588
Q gi|254780288|r 239 ARIDTKPRGWTKPSDHTPVIVSLDIPE 265 (281)
Q Consensus 239 ~~I~~~~~~~~~~SDH~Pv~~~l~lp~ 265 (281)
+.|+.+. .+|||+||+++|++++
T Consensus 236 ~~v~~~~----~~SDH~Pv~~d~~~~~ 258 (259)
T 2jc5_A 236 AHVYKDE----KFSDHAPLVVEYDYAA 258 (259)
T ss_dssp EEECCSS----CCSSBCCEEEEESCCC
T ss_pred EEECCCC----CCCCCEEEEEEEECCC
T ss_conf 9999999----9988300999996789