HHsearch results for GI: 254780288 and protein with PDBid: 2jc5_A

>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=100.00  E-value=8.4e-45  Score=269.92  Aligned_cols=254  Identities=26%  Similarity=0.430  Sum_probs=182.7

Q ss_pred             CCEEEEEEECCHHHHHH-HHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEE--EECCCCCCEEEEEEECCEEE
Q ss_conf             00799871031888899-8999998728988999856579445897787328978999--30477651489874031378
Q gi|254780288|r    3 VVTVATWNVNSIRARIH-NLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIET--CGQKSYNGVAILSKYQPIEI   79 (281)
Q Consensus         3 ~lrI~TwNinglr~r~~-~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~--~~~k~~~GvaIlsk~~~~~v   79 (281)
                      ||||+||||||+|++.+ .+.++|++++||||||||||+.+.++..+......+....  ..+.+..|+|++||+++..+
T Consensus         1 ~mki~swNv~G~~~~~~~~~~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~   80 (259)
T 2jc5_A            1 MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNV   80 (259)
T ss_dssp             CEEEEEEECSSHHHHHHTTHHHHHHHTTCSEEEEECCCCCGGGCCHHHHSGGGCEEEEECCSSTTCCCEEEEESSCCSEE
T ss_pred             CEEEEEEECCCHHHHHHCHHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCEEE
T ss_conf             91999998346777566309999986799999997361681107887861557603552023576505899843786355


Q ss_pred             EECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
Q ss_conf             63255564432330101100023207999631046678544310123677776553322232014760000110146867
Q gi|254780288|r   80 VTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQ  159 (281)
Q Consensus        80 ~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~  159 (281)
                      ....+.+..+.+.++....+    +++.+.++++|+..... .....|.+....+..............++++.++....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (259)
T 2jc5_A           81 QIGMGIEEFDREGRFVRCDF----GRLSVISLYLPSGSSAE-ERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQ  155 (259)
T ss_dssp             EESCSCHHHHTTCCEEEEEE----TTEEEEEEECCCCTTCH-HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCS
T ss_pred             EECCCCCCCCCHHEEEEEEE----CCEEEEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf             64368875460215677783----98999998744676334-31367788999999999876531543201465334722


Q ss_pred             CCCCHHHHHCCCCCCCCHHHHHHHH-HCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHC
Q ss_conf             4200001210487344634556532-103310000001337888720035787675255777135699947789833320
Q gi|254780288|r  160 PHDCYNPIIWENDACFTLEVRQSFQ-KLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHS  238 (281)
Q Consensus       160 ~~D~~~~~~~~~~~~~~~~er~~~~-~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~  238 (281)
                      ..+..+...+...+++...++.... .+...++.|.+|..++....+|||+++.+++.+|+|+||||||+|+.+.+++.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RIDyIl~s~~l~~~~~~  235 (259)
T 2jc5_A          156 NIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVS  235 (259)
T ss_dssp             GGGBSCSTTCTTSTTSCHHHHHHHHHHHHTTCCEEHHHHHCTTCCCCCEESCSSHHHHTTCEECCEEEEECHHHHTTEEE
T ss_pred             HHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECHHHHHHCEE
T ss_conf             65432735413445667044312456665057631232115777875001687886347998365899967189622349


Q ss_pred             EEEECHHHCCCCCCCCCCEEEEEECCC
Q ss_conf             287122206867676221999995588
Q gi|254780288|r  239 ARIDTKPRGWTKPSDHTPVIVSLDIPE  265 (281)
Q Consensus       239 ~~I~~~~~~~~~~SDH~Pv~~~l~lp~  265 (281)
                      +.|+.+.    .+|||+||+++|++++
T Consensus       236 ~~v~~~~----~~SDH~Pv~~d~~~~~  258 (259)
T 2jc5_A          236 AHVYKDE----KFSDHAPLVVEYDYAA  258 (259)
T ss_dssp             EEECCSS----CCSSBCCEEEEESCCC
T ss_pred             EEECCCC----CCCCCEEEEEEEECCC
T ss_conf             9999999----9988300999996789