HHsearch results for GI: 254780288 and protein with PDBid: 2voa_A
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=100.00 E-value=0 Score=327.83 Aligned_cols=256 Identities=34% Similarity=0.672 Sum_probs=211.8
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEEEC
Q ss_conf 00799871031888899899999872898899985657944589778732897899930477651489874031378632
Q gi|254780288|r 3 VVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTH 82 (281)
Q Consensus 3 ~lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v~~~ 82 (281)
||||+||||||+|+|.+++.++|++++||||||||||+.++++....+..+++.+...+.++++|+++++++++..+...
T Consensus 1 ~mKI~T~NvnG~r~r~~~~~~~i~~~~pDIi~lQEvk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (257)
T 2voa_A 1 MLKIATFNVNSIRSRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSGSKGRNGVAIASLEEPEDVSFG 80 (257)
T ss_dssp CEEEEEEECSCGGGTHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEEETTEEEEEEEESSCCEEEEES
T ss_pred CEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCHHHHHHCCCEEEECCCCCCCCCEEEECCCCEEEEEC
T ss_conf 91999998052998699889999868996999996766924478878731363146503477666113304785058842
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC
Q ss_conf 55564432330101100023207999631046678544310123677776553322232014760000110146867420
Q gi|254780288|r 83 LPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHD 162 (281)
Q Consensus 83 ~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D 162 (281)
......+. .|.. ......+.++++|+++......+++..+....+...........+..+++++||||+++...+
T Consensus 81 ~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (257)
T 2voa_A 81 LDSEPKDE-DRLI----RAKIAGIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPID 155 (257)
T ss_dssp CSSSSCCG-GGEE----EEEETTEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGGG
T ss_pred CCCCCCCC-CEEE----EEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 42123566-4589----987267599999830687797688888887789999999986642023233331013840643
Q ss_pred CHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCC-CCCCCCCCCEEEEEEECHHHHHHHHCEEE
Q ss_conf 00012104873446345565321033100000013378887200357876-75255777135699947789833320287
Q gi|254780288|r 163 CYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYA-DSWSKNKGIRIDHIMLSPEATSLLHSARI 241 (281)
Q Consensus 163 ~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~-~~~~~n~G~RID~il~s~~l~~~v~~~~I 241 (281)
..+........++...+|..+..+.+.||+|+||.++|....+|||+++. +.+.+|.|+||||||+|+++..++.++.|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~D~~r~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyIl~s~~l~~~~~~~~v 235 (257)
T 2voa_A 156 VHSPDKLKNHVCFHEDARRAYKKILELGFVDVLRKIHPNERIYTFYDYRVKGAIERGLGWRGDAILATPPLAERCVDCYA 235 (257)
T ss_dssp BSCGGGCTTSTTTCHHHHHHHHHHHTTTCEEHHHHHSTTCCCCSBCCTTSTTTTTTTCCBCCEEEEECHHHHTTEEEEEE
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHCEEEE
T ss_conf 35804334666578899999999987688120154379998631067657874347996777999978699865208998
Q ss_pred ECHHHCCCCCCCCCCEEEEEEC
Q ss_conf 1222068676762219999955
Q gi|254780288|r 242 DTKPRGWTKPSDHTPVIVSLDI 263 (281)
Q Consensus 242 ~~~~~~~~~~SDH~Pv~~~l~l 263 (281)
++..+.+..+|||+||+++|+|
T Consensus 236 ~~~~~~~~~~SDH~PV~~~l~i 257 (257)
T 2voa_A 236 DIKPRLAEKPSDHLPLVAVFDV 257 (257)
T ss_dssp CCHHHHSSSCCSBCCEEEEECC
T ss_pred EEEECCCCCCCCCEEEEEEEEC
T ss_conf 6510479999982379999989