Query gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 281 No_of_seqs 149 out of 3224 Neff 7.9 Searched_HMMs 23785 Date Tue May 24 17:41:29 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780288.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2j63_A AP-endonuclease; base e 100.0 0 0 413.4 18.5 258 2-264 148-467 (467) 2 1ako_A Exonuclease III; AP-end 100.0 0 0 352.9 19.0 259 4-262 1-267 (268) 3 1hd7_A DNA-(apurinic or apyrim 100.0 0 0 350.1 16.2 252 2-263 60-318 (318) 4 2jc4_A Exodeoxyribonuclease II 100.0 0 0 339.1 22.1 256 4-263 1-256 (256) 5 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 0 0 327.8 21.7 256 3-263 1-257 (257) 6 3g91_A MTH0212, exodeoxyribonu 100.0 0 0 319.0 19.4 260 1-269 1-263 (265) 7 2o3h_A DNA-(apurinic or apyrim 100.0 0 0 283.7 18.7 252 2-263 27-285 (285) 8 2jc5_A Exodeoxyribonuclease; h 100.0 8.4E-45 0 269.9 17.9 254 3-265 1-258 (259) 9 1vyb_A ORF2 contains A reverse 100.0 1.5E-44 0 268.4 13.8 231 2-262 6-238 (238) 10 2imq_X Salivary nitrophorin; f 100.0 7E-40 2.9E-44 242.3 9.9 253 2-264 7-281 (282) 11 3nr8_B Phosphatidylinositol-3, 100.0 1.4E-38 6E-43 234.9 7.9 257 3-266 9-314 (316) 12 3mtc_A Type II inositol-1,4,5- 100.0 8.3E-37 3.5E-41 225.0 8.4 254 4-265 10-303 (313) 13 1wdu_A TRAS1 ORF2P; four-layer 100.0 1.9E-34 8.2E-39 211.6 14.2 223 3-264 19-244 (245) 14 2xsw_A 72 kDa inositol polypho 100.0 1.1E-34 4.4E-39 213.1 7.5 259 4-266 28-323 (357) 15 3i41_A Beta-hemolysin; beta to 100.0 1.2E-33 5.1E-38 207.2 9.3 236 3-261 29-316 (317) 16 3l1w_A Uncharacterized protein 100.0 1.3E-32 5.3E-37 201.5 12.8 227 4-265 1-253 (257) 17 2ei9_A Non-LTR retrotransposon 100.0 1.3E-31 5.3E-36 195.9 13.3 229 3-279 7-236 (240) 18 1i9z_A Synaptojanin, phosphati 100.0 1.7E-32 7E-37 200.8 8.7 252 4-267 27-319 (347) 19 3ngq_A CCR4-NOT transcription 100.0 1.8E-30 7.4E-35 189.4 14.8 259 3-280 31-395 (398) 20 2ddr_A Sphingomyelin phosphodi 100.0 5.1E-31 2.1E-35 192.5 11.6 244 2-264 8-306 (306) 21 3mpr_A Putative endonuclease/e 100.0 4.4E-31 1.8E-35 192.8 11.2 233 2-267 5-293 (298) 22 1zwx_A SMCL, sphingomyelinase- 100.0 4.6E-31 1.9E-35 192.7 10.9 237 3-262 10-299 (301) 23 3g6s_A Putative endonuclease/e 100.0 9.3E-31 3.9E-35 191.0 10.8 229 2-266 2-263 (267) 24 2f1n_A CDT B, cytolethal diste 100.0 4.5E-31 1.9E-35 192.7 7.5 217 2-261 14-261 (262) 25 1sr4_B CDT B, cytolethal diste 99.9 2.4E-27 1E-31 171.8 12.9 222 1-261 2-259 (261) 26 2a40_B Deoxyribonuclease-1; WA 99.9 1.4E-26 5.7E-31 167.6 13.3 223 4-262 1-260 (260) 27 2w1v_A Nitrilase-2, nitrilase 77.7 2.6 0.00011 19.8 4.3 38 1-38 1-44 (276) 28 2e11_A Hydrolase; dimethylarse 55.0 9.4 0.00039 16.7 4.1 38 1-38 1-44 (266) 29 3ilv_A Glutamine-dependent NAD 41.2 16 0.00066 15.5 4.3 38 1-38 3-47 (634) 30 3n05_A NH(3)-dependent NAD(+) 32.6 22 0.00091 14.7 3.4 38 1-38 1-46 (590) 31 1xm7_A Hypothetical protein AQ 32.3 8.7 0.00036 16.9 0.3 23 133-155 32-54 (195) 32 3e5r_O PP38, glyceraldehyde-3- 31.1 23 0.00097 14.5 2.6 35 1-38 1-36 (337) 33 1f89_A 32.5 kDa protein YLR351 27.4 27 0.0011 14.2 3.2 36 3-38 10-54 (291) 34 1ccw_A Protein (glutamate muta 26.9 24 0.001 14.4 1.8 25 131-155 71-95 (137) 35 2b4r_O Glyceraldehyde-3-phosph 26.8 28 0.0012 14.1 2.5 35 1-38 9-44 (345) 36 2d00_A V-type ATP synthase sub 21.1 36 0.0015 13.5 4.9 19 19-37 36-54 (109) No 1 >2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Probab=100.00 E-value=0 Score=413.39 Aligned_cols=258 Identities=21% Similarity=0.306 Sum_probs=199.5 Q ss_pred CCCEEEEEEECCHHHHHHH----HHHHHHHHCCCEEEEEEEECCHHHCCHHHHH--HCCCEEEEE---ECCCCCCEEEEE Q ss_conf 7007998710318888998----9999987289889998565794458977873--289789993---047765148987 Q gi|254780288|r 2 SVVTVATWNVNSIRARIHN----LAAWIKENNPDIICLQETKTEDKNFPFETLQ--SLNYHIETC---GQKSYNGVAILS 72 (281) Q Consensus 2 ~~lrI~TwNinglr~r~~~----l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~--~~gy~~~~~---~~k~~~GvaIls 72 (281) .||||+||||||||+++++ +.+||++++||||||||||+..+.++.+.+. ..||.+++. +++||+||||++ T Consensus 148 ~~mKIiSWNVNGlR~~~kk~~~~l~~~L~~~~pDIIcLQEtk~~~~~~~~~~~~~~~~gY~~~~~~~~~kkgysGvAi~s 227 (467) T 2j63_A 148 RMYKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPCAFKRGYSGTRTYM 227 (467) T ss_dssp TEEEEEEEECSCHHHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECCSSSTTSCCEEEEE T ss_pred CEEEEEEEECCCHHHHHHCCHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCCCEEEECCCCCCCCCCEEEEE T ss_conf 44689999404777754306589999998569998999874246444697888751378516874246655304089998 Q ss_pred EECCEEE------EEC-----------------CCCCCCCCCCCEECCCCC------CCCCEEEEEEEECCCCCCCCCCC Q ss_conf 4031378------632-----------------555644323301011000------23207999631046678544310 Q gi|254780288|r 73 KYQPIEI------VTH-----------------LPGDDLDVQARFIEATFT------INTQTLRIGNLYLPHGNPITSTK 123 (281) Q Consensus 73 k~~~~~v------~~~-----------------~~~~~~d~~~R~i~~~i~------~~~~~i~v~n~y~P~g~~~~~~~ 123 (281) |.++... ..+ +.....|.+||++.+.+. .....+.|+|+|+|++.. +..+ T Consensus 228 K~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~egR~~~~~~~~~~~~~~~~~~~~l~n~y~pn~~~-~~~~ 306 (467) T 2j63_A 228 KNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALVNTYVANSGM-GLTR 306 (467) T ss_dssp ECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCCEEEEEECSSCCC----CCEEEEEEECCCCCT-TSTT T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCC-CCHH T ss_conf 177643343311112544567665444444333565556655525899841565333445888999864677655-4202 Q ss_pred HHHHHH-HHHHHHHHHHHH------------------HCCCCHHHHHHHCCCCCCCCCCHH---HHHCCCCCCCCHHHHH Q ss_conf 123677-776553322232------------------014760000110146867420000---1210487344634556 Q gi|254780288|r 124 YDDKIS-WIKRFLRFASQR------------------LELEEPLIFAGDYNIIPQPHDCYN---PIIWENDACFTLEVRQ 181 (281) Q Consensus 124 ~~~k~~-~~~~l~~~l~~~------------------~~~~~~vIi~GDFN~a~~~~D~~~---~~~~~~~~~~~~~er~ 181 (281) +++|.+ |...+..++..+ ...++++|||||||++|.+.|.++ +..+.+.+||+++||. T Consensus 307 ~~~r~~~~d~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~vIl~GDfNv~~~~~D~~~~~~~~~~~~~~g~~~eER~ 386 (467) T 2j63_A 307 LPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEERM 386 (467) T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHHHTTSTTSCHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHH T ss_conf 67788999999999999998866531011013445552257746872443557521102222324303678778989999 Q ss_pred HHHHCC-CCCHHHHCCCCCCCC-CCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEE Q ss_conf 532103-310000001337888-720035787675255777135699947789833320287122206867676221999 Q gi|254780288|r 182 SFQKLQ-NMGFTDAIRATHDTH-HLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIV 259 (281) Q Consensus 182 ~~~~l~-~~gl~D~~r~~~~~~-~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~ 259 (281) +|..++ +.||+|+||.+||.. +.||||+|+.++|.+|.||||||||+|+.|.++|.+|.|+.+.+ +|||+||++ T Consensus 387 ~~~~~l~~~glvDafR~~hP~~~~~YT~W~~r~~~r~~n~G~RIDyilvS~~L~~~V~~~~I~~~~~----gSDH~PV~l 462 (467) T 2j63_A 387 SFRETMQRTNSVDIFRQLYPQAGPVYSFWSQRINGRPRNLGWRLDYFVVSSRLASYVVDCFPMPTVM----GSDHCPFQM 462 (467) T ss_dssp HHHHHHHHTTEEEHHHHHCTTBCSCCSBCCTTTTTTTTTCCBCCEEEEEEGGGGGGEEEEEECTTCC----SSSBCCEEE T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHCEEEEECCCCC----CCCCCCEEE T ss_conf 9999998679899443035998998388287778432598660259997769970230899868999----688046499 Q ss_pred EEECC Q ss_conf 99558 Q gi|254780288|r 260 SLDIP 264 (281) Q Consensus 260 ~l~lp 264 (281) +|..| T Consensus 463 ~Lr~p 467 (467) T 2j63_A 463 WMRHP 467 (467) T ss_dssp EEECC T ss_pred EEECC T ss_conf 98689 No 2 >1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli K12} SCOP: d.151.1.1 Probab=100.00 E-value=0 Score=352.90 Aligned_cols=259 Identities=31% Similarity=0.518 Sum_probs=214.1 Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEEECC Q ss_conf 07998710318888998999998728988999856579445897787328978999304776514898740313786325 Q gi|254780288|r 4 VTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHL 83 (281) Q Consensus 4 lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v~~~~ 83 (281) |||+||||||||+|++.+.++|++++||||||||||+.+++++.+.+..+||.+.+.....+.|+++.++..+.....+. T Consensus 1 Mki~s~NvnGir~r~~~i~~~i~~~~~DIi~LQE~k~~~~~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268) T 1ako_A 1 MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGF 80 (268) T ss_dssp CEEEEEECSCGGGCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEETTEEEEEEEESSCCSEEEESS T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHCCHHHHHHCCCEEEECCCCCCCCCEEEECCCCHHHCCCC T ss_conf 98999972318875988999998789989999833289001898889755964642475466662265123523310487 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC Q ss_conf 556443233010110002320799963104667854-4310123677776553322232014760000110146867420 Q gi|254780288|r 84 PGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPI-TSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHD 162 (281) Q Consensus 84 ~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~-~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D 162 (281) ......................+.++++|.+.+... ...+.++|..|.+.+..++.....++.|+|+|||||+++.+.| T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~il~GdfN~~~~~~D 160 (268) T 1ako_A 81 PGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD 160 (268) T ss_dssp TTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGG T ss_pred CCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH T ss_conf 63332222310110001235877888764168864220021378999999999999998737997686345234841765 Q ss_pred CHHHHHC------CCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCC-CCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHH Q ss_conf 0001210------48734463455653210331000000133788-8720035787675255777135699947789833 Q gi|254780288|r 163 CYNPIIW------ENDACFTLEVRQSFQKLQNMGFTDAIRATHDT-HHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSL 235 (281) Q Consensus 163 ~~~~~~~------~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~-~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~ 235 (281) ++....+ ....++..++|+++..+.+.||+|+||.++|. .+.+|||+++.+++.+|.|+||||||+|+.+.++ T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~D~~r~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyil~S~~l~~~ 240 (268) T 1ako_A 161 IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAEC 240 (268) T ss_dssp BCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHTT T ss_pred HCCHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHCCCCCCCCEECCCCCCCCCCCCCEEEEEEEECHHHHHH T ss_conf 33735401121025765668789999999974897877143268878752004676776447986785799978799734 Q ss_pred HHCEEEECHHHCCCCCCCCCCEEEEEE Q ss_conf 320287122206867676221999995 Q gi|254780288|r 236 LHSARIDTKPRGWTKPSDHTPVIVSLD 262 (281) Q Consensus 236 v~~~~I~~~~~~~~~~SDH~Pv~~~l~ 262 (281) ++++.|++..+++..+|||+||+++|. T Consensus 241 ~~~~~i~~~~~~~~~~SDH~PV~~~~r 267 (268) T 1ako_A 241 CVETGIDYEIRSMEKPSDHAPVWATFR 267 (268) T ss_dssp EEEEEECHHHHTSSSCCSBCCEEEEEC T ss_pred HEEEEEEHHHCCCCCCCCCCCEEEEEE T ss_conf 128887566418999998544799997 No 3 >1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 2isi_A Probab=100.00 E-value=0 Score=350.10 Aligned_cols=252 Identities=29% Similarity=0.541 Sum_probs=197.6 Q ss_pred CCCEEEEEEECCHHHHHH-HHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEE----EECCCCCCEEEEEEECC Q ss_conf 700799871031888899-8999998728988999856579445897787328978999----30477651489874031 Q gi|254780288|r 2 SVVTVATWNVNSIRARIH-NLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIET----CGQKSYNGVAILSKYQP 76 (281) Q Consensus 2 ~~lrI~TwNinglr~r~~-~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~----~~~k~~~GvaIlsk~~~ 76 (281) ++|||+||||||||++++ .+.+||++++||||||||||+.+.++..+.....||.+.+ .+.++++|+++++|..+ T Consensus 60 ~~mki~swNvnGlr~~~k~~~~~~i~~~~pDIi~LQE~k~~~~~~~~~l~~~~g~~~~y~~~~~~~~~~~~~~~~~k~~~ 139 (318) T 1hd7_A 60 ATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCP 139 (318) T ss_dssp CCEEEEEEECSSHHHHHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC-----CCCEEEEESSCC T ss_pred CCEEEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCCC T ss_conf 87699999838857611344899997589958999835378012888889517996489997558777552235732686 Q ss_pred EEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC Q ss_conf 37863255564432330101100023207999631046678544310123677776553322232014760000110146 Q gi|254780288|r 77 IEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNI 156 (281) Q Consensus 77 ~~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~ 156 (281) ..+.........+.++|++.+.+ ..+.++++|+|+.+. ....+.++..+...+..... .....+++|+|||||+ T Consensus 140 ~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~Gd~N~ 213 (318) T 1hd7_A 140 LKVSYGIGDEEHDQEGRVIVAEF----DSFVLVTAYVPNAGR-GLVRLEYRQRWDEAFRKFLK-GLASRKPLVLCGDLNV 213 (318) T ss_dssp SEEEESCSCGGGSSSSCEEEEEC----SSCEEEEEECCCCCG-GGTTHHHHHHHHHHHHHHHH-HHHHHSCEEEEEECSC T ss_pred EEEEECCCCCCCCCEEEEEEEEE----EEEEEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHH-HHCCCCEEEEECCCCC T ss_conf 14674367665453005899874----359999997146777-53107888887777553233-2046433886044445 Q ss_pred CCCCCCCHHHHHCCCCCCCCHHHHHHHHHCC-CCCHHHHCCCCCCC-CCCEECCCCCCCCCCCCCCCEEEEEEECHHHHH Q ss_conf 8674200001210487344634556532103-31000000133788-872003578767525577713569994778983 Q gi|254780288|r 157 IPQPHDCYNPIIWENDACFTLEVRQSFQKLQ-NMGFTDAIRATHDT-HHLYSFWDYYADSWSKNKGIRIDHIMLSPEATS 234 (281) Q Consensus 157 a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~-~~gl~D~~r~~~~~-~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~ 234 (281) ++.+.|.+++.......++.++|+..|..++ +.||+|+||.+||. ++.||||+|+.++|.+|.||||||||+|+.|.+ T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~gl~D~~r~~~p~~~~~yT~ws~~~~~~~~n~g~RIDyilvS~~l~~ 293 (318) T 1hd7_A 214 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP 293 (318) T ss_dssp CCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGG T ss_pred CCCHHHHCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECHHHHH T ss_conf 87366414855512322341466778999985257642002015899995500066567653798656589996858982 Q ss_pred HHHCEEEECHHHCCCCCCCCCCEEEEEEC Q ss_conf 33202871222068676762219999955 Q gi|254780288|r 235 LLHSARIDTKPRGWTKPSDHTPVIVSLDI 263 (281) Q Consensus 235 ~v~~~~I~~~~~~~~~~SDH~Pv~~~l~l 263 (281) ++.++.|.... .+|||+||+++|+| T Consensus 294 ~v~~~~i~~~~----~~SDH~PV~l~L~l 318 (318) T 1hd7_A 294 ALCDSKIRSKA----LGSDHCPITLYLAL 318 (318) T ss_dssp GEEEEEECTTC----CSSSBCCEEEEECC T ss_pred HCCEEEECCCC----CCCCCCCEEEEEEC T ss_conf 33178985899----99984168999969 No 4 >2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Probab=100.00 E-value=0 Score=339.14 Aligned_cols=256 Identities=36% Similarity=0.666 Sum_probs=225.6 Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEEECC Q ss_conf 07998710318888998999998728988999856579445897787328978999304776514898740313786325 Q gi|254780288|r 4 VTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHL 83 (281) Q Consensus 4 lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v~~~~ 83 (281) |||+||||||+|+|++++.++|++++||||||||||+.+++++.+.+..+++++.+++.....|.+++++.++....... T Consensus 1 mKi~T~Nvng~r~r~~~~~~~i~~~~pDIv~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (256) T 2jc4_A 1 MKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQKTYNGVAIVSRSVPQDVHFGL 80 (256) T ss_dssp CEEEEEECSCHHHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEECCSSSCCEEEEESSCCEEEEESC T ss_pred CEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCEEECCCCCCCCCEEEEEECCCCCCCCC T ss_conf 98999981779999999999998489989999865558000897897212671354165455573278840664111246 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC Q ss_conf 55644323301011000232079996310466785443101236777765533222320147600001101468674200 Q gi|254780288|r 84 PGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDC 163 (281) Q Consensus 84 ~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~ 163 (281) .....+..+|.+.+.+ ....++++|+|++...+..++.+|..+...+.....+....+++++++||||+++.+.++ T Consensus 81 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~n~~~~~~~~ 156 (256) T 2jc4_A 81 PALPDDPQRRVIAATV----SGVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADC 156 (256) T ss_dssp TTSTTCCSCCEEEEEE----TTEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGB T ss_pred CCCCCCCCCEEEEEEC----CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH T ss_conf 8887775515999850----877999997569987642779999999999998888762248874303432358648776 Q ss_pred HHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCEEEEC Q ss_conf 00121048734463455653210331000000133788872003578767525577713569994778983332028712 Q gi|254780288|r 164 YNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDT 243 (281) Q Consensus 164 ~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~~I~~ 243 (281) ..+..+.+..++.+++..+...+.+.|++|+||..+|+...+|||+++.+.+.+|.|+||||||+|+++.++++++.|++ T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyI~~S~~l~~~v~~~~v~~ 236 (256) T 2jc4_A 157 YDPEKWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDL 236 (256) T ss_dssp SSGGGGTTCTTSCHHHHHHHHHHHTTTCEEHHHHHCCSSCCCCBCCTTTTHHHHTCCBCCEEEEECHHHHTTEEEEEECH T ss_pred HCHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHCEEEEEEE T ss_conf 07343014545898999988754315738988761389876325787677241688546689996859973326999973 Q ss_pred HHHCCCCCCCCCCEEEEEEC Q ss_conf 22068676762219999955 Q gi|254780288|r 244 KPRGWTKPSDHTPVIVSLDI 263 (281) Q Consensus 244 ~~~~~~~~SDH~Pv~~~l~l 263 (281) +.+++..+|||+||+++|++ T Consensus 237 ~~~~~~~~SDH~PV~~~l~~ 256 (256) T 2jc4_A 237 ETRALERPSDHAPVTAEFDW 256 (256) T ss_dssp HHHTSSSCCSBCCEEEEECC T ss_pred CCCCCCCCCCCCCEEEEEEC T ss_conf 12479999982268999969 No 5 >2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Probab=100.00 E-value=0 Score=327.83 Aligned_cols=256 Identities=34% Similarity=0.672 Sum_probs=211.8 Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEEEC Q ss_conf 00799871031888899899999872898899985657944589778732897899930477651489874031378632 Q gi|254780288|r 3 VVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTH 82 (281) Q Consensus 3 ~lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v~~~ 82 (281) ||||+||||||+|+|.+++.++|++++||||||||||+.++++....+..+++.+...+.++++|+++++++++..+... T Consensus 1 ~mKI~T~NvnG~r~r~~~~~~~i~~~~pDIi~lQEvk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (257) T 2voa_A 1 MLKIATFNVNSIRSRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSGSKGRNGVAIASLEEPEDVSFG 80 (257) T ss_dssp CEEEEEEECSCGGGTHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEEETTEEEEEEEESSCCEEEEES T ss_pred CEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCHHHHHHCCCEEEECCCCCCCCCEEEECCCCEEEEEC T ss_conf 91999998052998699889999868996999996766924478878731363146503477666113304785058842 Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC Q ss_conf 55564432330101100023207999631046678544310123677776553322232014760000110146867420 Q gi|254780288|r 83 LPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHD 162 (281) Q Consensus 83 ~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D 162 (281) ......+. .|.. ......+.++++|+++......+++..+....+...........+..+++++||||+++...+ T Consensus 81 ~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (257) T 2voa_A 81 LDSEPKDE-DRLI----RAKIAGIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPID 155 (257) T ss_dssp CSSSSCCG-GGEE----EEEETTEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGGG T ss_pred CCCCCCCC-CEEE----EEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH T ss_conf 42123566-4589----987267599999830687797688888887789999999986642023233331013840643 Q ss_pred CHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCC-CCCCCCCCCEEEEEEECHHHHHHHHCEEE Q ss_conf 00012104873446345565321033100000013378887200357876-75255777135699947789833320287 Q gi|254780288|r 163 CYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYA-DSWSKNKGIRIDHIMLSPEATSLLHSARI 241 (281) Q Consensus 163 ~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~-~~~~~n~G~RID~il~s~~l~~~v~~~~I 241 (281) ..+........++...+|..+..+.+.||+|+||.++|....+|||+++. +.+.+|.|+||||||+|+++..++.++.| T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~D~~r~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyIl~s~~l~~~~~~~~v 235 (257) T 2voa_A 156 VHSPDKLKNHVCFHEDARRAYKKILELGFVDVLRKIHPNERIYTFYDYRVKGAIERGLGWRGDAILATPPLAERCVDCYA 235 (257) T ss_dssp BSCGGGCTTSTTTCHHHHHHHHHHHTTTCEEHHHHHSTTCCCCSBCCTTSTTTTTTTCCBCCEEEEECHHHHTTEEEEEE T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHCEEEE T ss_conf 35804334666578899999999987688120154379998631067657874347996777999978699865208998 Q ss_pred ECHHHCCCCCCCCCCEEEEEEC Q ss_conf 1222068676762219999955 Q gi|254780288|r 242 DTKPRGWTKPSDHTPVIVSLDI 263 (281) Q Consensus 242 ~~~~~~~~~~SDH~Pv~~~l~l 263 (281) ++..+.+..+|||+||+++|+| T Consensus 236 ~~~~~~~~~~SDH~PV~~~l~i 257 (257) T 2voa_A 236 DIKPRLAEKPSDHLPLVAVFDV 257 (257) T ss_dssp CCHHHHSSSCCSBCCEEEEECC T ss_pred EEEECCCCCCCCCEEEEEEEEC T ss_conf 6510479999982379999989 No 6 >3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Probab=100.00 E-value=0 Score=318.95 Aligned_cols=260 Identities=25% Similarity=0.436 Sum_probs=205.1 Q ss_pred CCCCEEEEEEECCHHH-HHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEE--ECCCCCCEEEEEEECCE Q ss_conf 9700799871031888-89989999987289889998565794458977873289789993--04776514898740313 Q gi|254780288|r 1 MSVVTVATWNVNSIRA-RIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETC--GQKSYNGVAILSKYQPI 77 (281) Q Consensus 1 m~~lrI~TwNinglr~-r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~--~~k~~~GvaIlsk~~~~ 77 (281) ||+|||+||||||||+ +.+++.++|++++||||||||||+.+++++.......+++..+. .++++.|++++++.+.. T Consensus 1 ~~~mki~SwNvngl~~~~~~~~~~~i~~~~pDIi~LQEvk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (265) T 3g91_A 1 MAVLKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPS 80 (265) T ss_dssp -CEEEEEEEECSCHHHHHHHTHHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECBSSTTSCCEEEEESSCCS T ss_pred CCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCC T ss_conf 98609999992428887777399999758996999881507800089878724786168861222322434786326752 Q ss_pred EEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC Q ss_conf 78632555644323301011000232079996310466785443101236777765533222320147600001101468 Q gi|254780288|r 78 EIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNII 157 (281) Q Consensus 78 ~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a 157 (281) .....++....+..++.+... ..++.+.++|+++.... ..+..........+..+.......+.+.+++||||++ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (265) T 3g91_A 81 SLREGFGVERFDTEGRIQIAD----FDDFLLYNIYFPNGAMS-EERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTA 155 (265) T ss_dssp EEECCCSCHHHHSBSCEEEEE----CSSCEEEEEECCCCTTC-HHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCC T ss_pred CCCCCCCCCCCCCHHEEEEEE----CCCEEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCC T ss_conf 000378876534020467552----29889999960588643-1125778899999999999985467846720651028 Q ss_pred CCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHH Q ss_conf 67420000121048734463455653210331000000133788872003578767525577713569994778983332 Q gi|254780288|r 158 PQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLH 237 (281) Q Consensus 158 ~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~ 237 (281) .......++....+..++++.+|+++..+.+.||+|+|+..+++.+.+|||+++..++.+|.|+||||||+|+++.+++. T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~RIDyIl~s~~l~~~v~ 235 (265) T 3g91_A 156 HREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVK 235 (265) T ss_dssp CSGGGBSCTGGGTTSTTSCHHHHHHHHHHHHTTEEETHHHHCCCSCCCSBCCSSTTTTTTTCCBCCEEEEEEGGGGGGEE T ss_pred CHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEHHHCCCCCCCEECCCCCCCCCCCCCEEEEEEEECHHHHHHCC T ss_conf 70440468666278968998999876533436981012422789996143378788755899757589997759970244 Q ss_pred CEEEECHHHCCCCCCCCCCEEEEEECCCCCCC Q ss_conf 02871222068676762219999955887766 Q gi|254780288|r 238 SARIDTKPRGWTKPSDHTPVIVSLDIPEPRKK 269 (281) Q Consensus 238 ~~~I~~~~~~~~~~SDH~Pv~~~l~lp~~~~~ 269 (281) ++.|+.+. .+|||+||+++|+||+-.-+ T Consensus 236 ~~~v~~~~----~~SDH~PV~~el~l~~~~~~ 263 (265) T 3g91_A 236 RSWILSDV----MGSDHCPIGLEIELLEHHHH 263 (265) T ss_dssp EEEECTTC----CSSSBCCEEEEEECCCCC-- T ss_pred EEEECCCC----CCCCCCCEEEEEEECCCCCC T ss_conf 99984799----99992578999991464556 No 7 >2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Probab=100.00 E-value=0 Score=283.69 Aligned_cols=252 Identities=29% Similarity=0.496 Sum_probs=170.3 Q ss_pred CCCEEEEEEECCHHHHHH-HHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEE----ECCCCCCEEEEEEECC Q ss_conf 700799871031888899-89999987289889998565794458977873289789993----0477651489874031 Q gi|254780288|r 2 SVVTVATWNVNSIRARIH-NLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETC----GQKSYNGVAILSKYQP 76 (281) Q Consensus 2 ~~lrI~TwNinglr~r~~-~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~----~~k~~~GvaIlsk~~~ 76 (281) +.|||+||||||+|++.+ .+.+||++++||||||||||+.+.++..+.....+|.+... +.++..|.+++.+..+ T Consensus 27 ~~mkiiSwNvnGlr~~~~~~~~~~l~~~~pDIi~LQE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (285) T 2o3h_A 27 ATLKIASWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCP 106 (285) T ss_dssp CCEEEEEEECSSHHHHHHTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECBC--CCSCCEEEEESSCC T ss_pred CCEEEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC T ss_conf 96799999817877732335899997579979999975478111888686157874455411355665443123246686 Q ss_pred EEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC Q ss_conf 37863255564432330101100023207999631046678544310123677776553322232014760000110146 Q gi|254780288|r 77 IEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNI 156 (281) Q Consensus 77 ~~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~ 156 (281) ..+...........++++.... .....+..++++.++.. ...+......... ..........+.+++++||||+ T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~gd~n~ 180 (285) T 2o3h_A 107 LKVSYGIGDEEHDQEGRVIVAE--FDSFVLVTAYVPNAGRG---LVRLEYRQRWDEA-FRKFLKGLASRKPLVLCGDLNV 180 (285) T ss_dssp SEEEESCSCGGGSSBCCEEEEE--CSSCEEEEEECCCCCGG---GTTHHHHHHHHHH-HHHHHHHHHTTSCEEEEEECSC T ss_pred EEEEECCCCCCCCCCCEEEEEE--ECCEEEEEEEECCCCCC---CCCHHHHHHHHHH-HHHHHHHHCCCCEEEEECCHHC T ss_conf 0566357877444332189998--35449999970467775---2006788877566-6554443046543897051112 Q ss_pred CCCCCCCHHHHHCCCCCCCCHHHHHHHHHC-CCCCHHHHCCCCCC-CCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHH Q ss_conf 867420000121048734463455653210-33100000013378-8872003578767525577713569994778983 Q gi|254780288|r 157 IPQPHDCYNPIIWENDACFTLEVRQSFQKL-QNMGFTDAIRATHD-THHLYSFWDYYADSWSKNKGIRIDHIMLSPEATS 234 (281) Q Consensus 157 a~~~~D~~~~~~~~~~~~~~~~er~~~~~l-~~~gl~D~~r~~~~-~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~ 234 (281) ++.+.+.++.............+...|..+ .+.||.|++|..+| .++.||||+++.+++.++.|+||||||+|+++.. T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~r~~~p~~~~~yT~~s~~~~~~~~~~g~RID~Il~S~~l~~ 260 (285) T 2o3h_A 181 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP 260 (285) T ss_dssp CCSGGGBSCTTTCTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCCSCCSBCCSSTTHHHHTCCBCCEEEEECGGGGG T ss_pred CCCHHHCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCEEEEEEEECHHHHH T ss_conf 86243204767642002468388888999974147544202424899982675458788452799667689997838971 Q ss_pred HHHCEEEECHHHCCCCCCCCCCEEEEEEC Q ss_conf 33202871222068676762219999955 Q gi|254780288|r 235 LLHSARIDTKPRGWTKPSDHTPVIVSLDI 263 (281) Q Consensus 235 ~v~~~~I~~~~~~~~~~SDH~Pv~~~l~l 263 (281) ++.++.|+.. ..+|||+||+++|+| T Consensus 261 ~v~~~~v~~~----~~~SDH~PV~v~L~l 285 (285) T 2o3h_A 261 ALCDSKIRSK----ALGSDHCPITLYLAL 285 (285) T ss_dssp GEEEEEECTT----CCSSSBCCEEEEECC T ss_pred HCEEEEECCC----CCCCCCCCEEEEEEC T ss_conf 3107898789----999983268999979 No 8 >2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Probab=100.00 E-value=8.4e-45 Score=269.92 Aligned_cols=254 Identities=26% Similarity=0.430 Sum_probs=182.7 Q ss_pred CCEEEEEEECCHHHHHH-HHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEE--EECCCCCCEEEEEEECCEEE Q ss_conf 00799871031888899-8999998728988999856579445897787328978999--30477651489874031378 Q gi|254780288|r 3 VVTVATWNVNSIRARIH-NLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIET--CGQKSYNGVAILSKYQPIEI 79 (281) Q Consensus 3 ~lrI~TwNinglr~r~~-~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~--~~~k~~~GvaIlsk~~~~~v 79 (281) ||||+||||||+|++.+ .+.++|++++||||||||||+.+.++..+......+.... ..+.+..|+|++||+++..+ T Consensus 1 ~mki~swNv~G~~~~~~~~~~~~i~~~~pDIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~ 80 (259) T 2jc5_A 1 MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNV 80 (259) T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHHTTCSEEEEECCCCCGGGCCHHHHSGGGCEEEEECCSSTTCCCEEEEESSCCSEE T ss_pred CEEEEEEECCCHHHHHHCHHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCCEEEEECCCCCCCEEEEEECCCCEEE T ss_conf 91999998346777566309999986799999997361681107887861557603552023576505899843786355 Q ss_pred EECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC Q ss_conf 63255564432330101100023207999631046678544310123677776553322232014760000110146867 Q gi|254780288|r 80 VTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQ 159 (281) Q Consensus 80 ~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~ 159 (281) ....+.+..+.+.++....+ +++.+.++++|+..... .....|.+....+..............++++.++.... T Consensus 81 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (259) T 2jc5_A 81 QIGMGIEEFDREGRFVRCDF----GRLSVISLYLPSGSSAE-ERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQ 155 (259) T ss_dssp EESCSCHHHHTTCCEEEEEE----TTEEEEEEECCCCTTCH-HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCS T ss_pred EECCCCCCCCCHHEEEEEEE----CCEEEEEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH T ss_conf 64368875460215677783----98999998744676334-31367788999999999876531543201465334722 Q ss_pred CCCCHHHHHCCCCCCCCHHHHHHHH-HCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHC Q ss_conf 4200001210487344634556532-103310000001337888720035787675255777135699947789833320 Q gi|254780288|r 160 PHDCYNPIIWENDACFTLEVRQSFQ-KLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHS 238 (281) Q Consensus 160 ~~D~~~~~~~~~~~~~~~~er~~~~-~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~ 238 (281) ..+..+...+...+++...++.... .+...++.|.+|..++....+|||+++.+++.+|+|+||||||+|+.+.+++.+ T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RIDyIl~s~~l~~~~~~ 235 (259) T 2jc5_A 156 NIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVS 235 (259) T ss_dssp GGGBSCSTTCTTSTTSCHHHHHHHHHHHHTTCCEEHHHHHCTTCCCCCEESCSSHHHHTTCEECCEEEEECHHHHTTEEE T ss_pred HHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECHHHHHHCEE T ss_conf 65432735413445667044312456665057631232115777875001687886347998365899967189622349 Q ss_pred EEEECHHHCCCCCCCCCCEEEEEECCC Q ss_conf 287122206867676221999995588 Q gi|254780288|r 239 ARIDTKPRGWTKPSDHTPVIVSLDIPE 265 (281) Q Consensus 239 ~~I~~~~~~~~~~SDH~Pv~~~l~lp~ 265 (281) +.|+.+. .+|||+||+++|++++ T Consensus 236 ~~v~~~~----~~SDH~Pv~~d~~~~~ 258 (259) T 2jc5_A 236 AHVYKDE----KFSDHAPLVVEYDYAA 258 (259) T ss_dssp EEECCSS----CCSSBCCEEEEESCCC T ss_pred EEECCCC----CCCCCEEEEEEEECCC T ss_conf 9999999----9988300999996789 No 9 >1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Probab=100.00 E-value=1.5e-44 Score=268.41 Aligned_cols=231 Identities=25% Similarity=0.350 Sum_probs=164.9 Q ss_pred CCCEEEEEEECCHHH--HHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEE Q ss_conf 700799871031888--899899999872898899985657944589778732897899930477651489874031378 Q gi|254780288|r 2 SVVTVATWNVNSIRA--RIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEI 79 (281) Q Consensus 2 ~~lrI~TwNinglr~--r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v 79 (281) +.|||+||||||++. +..++.++|++++|||||||||+.....+........+|++......+++|+|+++|+++... T Consensus 6 ~~lki~t~Ni~g~~~~~~~~~i~~~i~~~~pDIi~LQEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (238) T 1vyb_A 6 SHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGKQKKAGVAILVSDKTDFK 85 (238) T ss_dssp CCEEEEEEECSCCCSHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEECCSSSSCCEEEEECTTCCCE T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCEEEEEECCCCCCCEEEEEEECCCEE T ss_conf 88899999888841234467999999866992999983646624453111103430664410367455589975023100 Q ss_pred EECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC Q ss_conf 63255564432330101100023207999631046678544310123677776553322232014760000110146867 Q gi|254780288|r 80 VTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQ 159 (281) Q Consensus 80 ~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~ 159 (281) ...... +..++...+.+......+.++|+|+|++.. . ++...+...+.+ ....++|++||||..+. T Consensus 86 ~~~~~~---~~~~~~~~~~~~~~~~~~~i~~vy~~~~~~---~------~~~~~~~~~~~~--~~~~~~il~GDfN~~~~ 151 (238) T 1vyb_A 86 PTKIKR---DKEGHYIMVKGSIQQEELTILNIYAPNTGA---P------RFIKQVLSDLQR--DLDSHTLIMGDFNTPLS 151 (238) T ss_dssp EEEEEE---CTTSSEEEEEEEETTEEEEEEEEECCSSSH---H------HHHHHHHHHTTT--TCCTTEEEEEECSSCSS T ss_pred CCCCCC---CCCCCEEEEEEEECCCEEEEEEECCCCCHH---H------HHHHHHHHHHHH--HCCCCCEECCCCCCCCC T ss_conf 156445---755540236885057449999623763024---7------788888999986--30365011010046874 Q ss_pred CCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE Q ss_conf 42000012104873446345565321033100000013378887200357876752557771356999477898333202 Q gi|254780288|r 160 PHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239 (281) Q Consensus 160 ~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~ 239 (281) +.|..... +...+.+.....+.+.||.|+||.+++....+|||+++.+. +.||||||+|+.+..++.++ T Consensus 152 ~~~~~~~~------~~~~~~~~~~~~l~~~~l~d~~r~~~~~~~~~t~~~~~~~~-----~~rID~i~~s~~~~~~~~~~ 220 (238) T 1vyb_A 152 TLDRSTRQ------KVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHT-----YSKIDHIVGSKALLSKCKRT 220 (238) T ss_dssp GGGBTTCC------CCCHHHHHHHHHHHHTTEEEHHHHHCTTCCCCSEEETTTTE-----EECCEEEEEEGGGGGGEEEE T ss_pred HHHCCCCC------CCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCC-----CCEEEEEEECCHHHHHCCEE T ss_conf 55423500------02135688899886303553121201368755510478897-----86267999784797026299 Q ss_pred EEECHHHCCCCCCCCCCEEEEEE Q ss_conf 87122206867676221999995 Q gi|254780288|r 240 RIDTKPRGWTKPSDHTPVIVSLD 262 (281) Q Consensus 240 ~I~~~~~~~~~~SDH~Pv~~~l~ 262 (281) +|+.+ .+|||+||+++|. T Consensus 221 ~v~~~-----~~SDH~pv~~~Lk 238 (238) T 1vyb_A 221 EIITN-----YLSDHSAIKLELR 238 (238) T ss_dssp EEECC-----SSSSSCEEEEEEC T ss_pred EECCC-----CCCCCCCEEEEEC T ss_conf 96899-----7998201899969 No 10 >2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* Probab=100.00 E-value=7e-40 Score=242.26 Aligned_cols=253 Identities=12% Similarity=0.133 Sum_probs=166.0 Q ss_pred CCCEEEEEEECCHHHH--HHHHHHHHHHHCCCE--EEEEEEECCHHHCCH---------HHHHHCCCEEEEEECCCCCCE Q ss_conf 7007998710318888--998999998728988--999856579445897---------787328978999304776514 Q gi|254780288|r 2 SVVTVATWNVNSIRAR--IHNLAAWIKENNPDI--ICLQETKTEDKNFPF---------ETLQSLNYHIETCGQKSYNGV 68 (281) Q Consensus 2 ~~lrI~TwNinglr~r--~~~l~~~l~~~~pDI--i~LQEvk~~~~~~~~---------~~~~~~gy~~~~~~~k~~~Gv 68 (281) ..|+|+||||||+|++ ++.+..++.+.+||| |||||+++..+.++. +.+...+|.......++..|+ T Consensus 7 ~~v~i~TWNvn~~~~~~~l~~~l~~~~~~~pDI~vi~lQE~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~~~~~~~~~~ 86 (282) T 2imq_X 7 LSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNTITETMGL 86 (282) T ss_dssp EEEEEEEEEEETCCCCSCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTEEEEEEEECSSEEE T ss_pred EEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCEE T ss_conf 77999998379970761889885756568989899985708836034522279999999871678648999850356316 Q ss_pred EEEEEECCEEEE-----ECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC Q ss_conf 898740313786-----325556443233010110002320799963104667854431012367777655332223201 Q gi|254780288|r 69 AILSKYQPIEIV-----THLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLE 143 (281) Q Consensus 69 aIlsk~~~~~v~-----~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~ 143 (281) ++++|.+..... ...+........+.+.+.+.+.+..+.++|.|++++...... ..+...+......... T Consensus 87 ~v~~~~~~~~~~~~~~~~~~~~~~~~~nkG~v~i~~~~~~~~~~~vn~hl~~~~~~~~~-----r~~~~~~~~~~~~~~~ 161 (282) T 2imq_X 87 TVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTN-----TKYAYDTRLDYSKKDD 161 (282) T ss_dssp EEEEEGGGCCTTTCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCCTTS-----SSSSCCGGGCTTSSSS T ss_pred EEEECCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHH-----HHHHHHHHHHCCCCCC T ss_conf 99841553444347433576214300267429999613893414546545430179999-----9899987651034577 Q ss_pred CCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEE Q ss_conf 47600001101468674200001210487344634556532103310000001337888720035787675255777135 Q gi|254780288|r 144 LEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRI 223 (281) Q Consensus 144 ~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RI 223 (281) .+..+|++||||+.+...+........ ....+++...+.+...++.|+||.+++.+..||||.++..++.++.|+|| T Consensus 162 ~~d~~i~~GDlN~r~~~~~~~~~~~~~---~~~~~~l~~~d~~~~~~~~~~f~~~~e~~~~F~~~~~~~~~~~~~~~~Ri 238 (282) T 2imq_X 162 PSDFLFWIGDLNVRVETNATHAKSLVD---QNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSAT 238 (282) T ss_dssp CCSEEEEEEECSCCBCSCHHHHHHHHH---TTCHHHHHTTBTHHHHHHTTSSTTCBCCCCCSCCCBCBCTTSSCBCTTSC T ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHH---HCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 787467436655443422145666642---04899998746676542223202353688734995125777654677526 Q ss_pred ----EEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEECC Q ss_conf ----69994778983332028712220686767622199999558 Q gi|254780288|r 224 ----DHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIP 264 (281) Q Consensus 224 ----D~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~lp 264 (281) ||||+|+.+.++++...++.. ....+|||+||+++|+|. T Consensus 239 psw~DrIL~s~~~~~~v~~~~y~~~--~~~~~SDH~PV~a~F~v~ 281 (282) T 2imq_X 239 PSWTDRALYKSGTGKTIQPLSYNSL--TNYKQTEHRPVLAKFRVT 281 (282) T ss_dssp CBCCEEEEEECSSSCCEEEEEEEEC--TTCCSSSSCCEEEEEEEE T ss_pred CCCCCEEEEECCCCCCCEEEEEEEC--CCCCCCCCCCEEEEEEEE T ss_conf 7667779978875785389587778--888888890479999997 No 11 >3nr8_B Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; structural genomics consortium, SGC, trisphosphate 5-phosphatase 2, SHIP2, INPPL1, SHIP-2; 2.80A {Homo sapiens} Probab=100.00 E-value=1.4e-38 Score=234.88 Aligned_cols=257 Identities=18% Similarity=0.144 Sum_probs=157.8 Q ss_pred CCEEEEEEECCHHHHH------------HHHHHHHHHHCCCE--EEEEEEECCHHHCCHHH---HH---HCCCEEEEEEC Q ss_conf 0079987103188889------------98999998728988--99985657944589778---73---28978999304 Q gi|254780288|r 3 VVTVATWNVNSIRARI------------HNLAAWIKENNPDI--ICLQETKTEDKNFPFET---LQ---SLNYHIETCGQ 62 (281) Q Consensus 3 ~lrI~TwNinglr~r~------------~~l~~~l~~~~pDI--i~LQEvk~~~~~~~~~~---~~---~~gy~~~~~~~ 62 (281) .+.|+||||||+++.. +.+.+++...+||| |||||+++.+.+++... +. ...|......+ T Consensus 9 ~v~i~TwNvng~~~~~~l~~~l~~~~~~~~~~~~~~~~~~DI~vi~lQE~k~~~~~~~~~~~~~l~~~~~~~y~~~~~~~ 88 (316) T 3nr8_B 9 SVFIGTWNMGSVPPPKNVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQS 88 (316) T ss_dssp EEEEEEECCCSSCCCSCCHHHHTTCSEEECCC---CCCCCSEEEEEESSCCSCHHHHHHHHHHHHHHHHSSCCEEEEEEE T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECC T ss_conf 79999995599607502565530232021055553036998499968559876788999999976212554279976213 Q ss_pred CCCCCEEEEEEECCE----E-----EEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHH Q ss_conf 776514898740313----7-----8632555644323301011000232079996310466785443101236777765 Q gi|254780288|r 63 KSYNGVAILSKYQPI----E-----IVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKR 133 (281) Q Consensus 63 k~~~GvaIlsk~~~~----~-----v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~ 133 (281) .++.|++|++|.++. . +..++++...+..+ +.+.+.+.+..|.++|+|+|+|+.....+.......++. T Consensus 89 ~~g~~~~vf~r~~~~~~i~~v~~~~~~~G~~~~~~nkg~--v~i~~~~~~~~i~~vn~hl~~g~~~~~~r~~~~~~i~~~ 166 (316) T 3nr8_B 89 LWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGA--VGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRL 166 (316) T ss_dssp ETTEEEEEEECGGGGGGEEEEEEEEEECC------CCEE--EEEEEEETTEEEEEEEEECCCSTTCHHHHHHHHHHHHHH T ss_pred CCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCE--EEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHH T ss_conf 232379999616445644431332122388877688733--999999899889999965667886077788889999996 Q ss_pred H-----HHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHH-----HCCCCCCCCHHHHHHHH-----HCCCC--CHHHHCC Q ss_conf 5-----332223201476000011014686742000012-----10487344634556532-----10331--0000001 Q gi|254780288|r 134 F-----LRFASQRLELEEPLIFAGDYNIIPQPHDCYNPI-----IWENDACFTLEVRQSFQ-----KLQNM--GFTDAIR 196 (281) Q Consensus 134 l-----~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~-----~~~~~~~~~~~er~~~~-----~l~~~--gl~D~~r 196 (281) + ...........+++|+|||||+++...|.+... .+....++.+.+|+... .+.+. .|.|+|| T Consensus 167 l~~~~~~~~~~~~~~~~~~vi~~GDlN~r~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~E~~i~F~pTyk 246 (316) T 3nr8_B 167 LSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYR 246 (316) T ss_dssp CCC----CTTTCSSSSSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTSBHHHHHHHTTSSSTTCBCCCCCSCCCBC T ss_pred CCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEECCCCCCCCCC T ss_conf 52241221210011245827996652022465314667762346556654269999998618766897227843478736 Q ss_pred CCCCCCCCEECCCCCCCCCCCCC-CC--EEEEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEECCCC Q ss_conf 33788872003578767525577-71--356999477898333202871222068676762219999955887 Q gi|254780288|r 197 ATHDTHHLYSFWDYYADSWSKNK-GI--RIDHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIPEP 266 (281) Q Consensus 197 ~~~~~~~~yT~~~~~~~~~~~n~-G~--RID~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~lp~~ 266 (281) ..++....||||+++.+++.++. || ||||.. ++...-++.++.+..+ ...|||+||+++|++.-. T Consensus 247 ~~~~~~~~yt~~~~~~~~~~~r~psw~DRIly~~-~~~~~~~~~~y~~~~~----~~~SDH~PV~a~f~v~v~ 314 (316) T 3nr8_B 247 YERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKS-YPETHIICNSYGCTDD----IVTSDHSPVFGTFEVGVT 314 (316) T ss_dssp BCTTCSSCBCCCBCCTTCCBCCCCBCCEEEEEEC-CTTSCEEEEEEEECSS----CCSSSSCCEEEEEEEECC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CCCCCEEEEEEEECCC----CCCCCCHHHEEEEEEEEE T ss_conf 6279998761004557744455753463599989-9666636889988689----978877533899999971 No 12 >3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} Probab=100.00 E-value=8.3e-37 Score=224.96 Aligned_cols=254 Identities=16% Similarity=0.184 Sum_probs=144.4 Q ss_pred CEEEEEEECCHHHHHHHHHHHHHH--HCCCE--EEEEEEECCHHHCCHH----------HHH-----HCCCEEEEEECCC Q ss_conf 079987103188889989999987--28988--9998565794458977----------873-----2897899930477 Q gi|254780288|r 4 VTVATWNVNSIRARIHNLAAWIKE--NNPDI--ICLQETKTEDKNFPFE----------TLQ-----SLNYHIETCGQKS 64 (281) Q Consensus 4 lrI~TwNinglr~r~~~l~~~l~~--~~pDI--i~LQEvk~~~~~~~~~----------~~~-----~~gy~~~~~~~k~ 64 (281) |.|+||||||+|++ +.+..||.. .+||| |||||+|+..+++... .+. ..+|........+ T Consensus 10 i~v~TWNVng~~~~-~~l~~~l~~~~~~~DI~vi~lQE~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 88 (313) T 3mtc_A 10 FFAGTYNVNGQSPK-ECLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLV 88 (313) T ss_dssp EEEEEEECTTCCCC-SCTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCTTSCEEEEEEEEET T ss_pred EEEEEEECCCCCCC-CHHHHHHCCCCCCCCEEEEECCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC T ss_conf 99999975994776-13788752567689928997867977824256320345557999998630578758987678523 Q ss_pred CCCEEEEEEECCE---------EEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHH------HHHH Q ss_conf 6514898740313---------786325556443233010110002320799963104667854431012------3677 Q gi|254780288|r 65 YNGVAILSKYQPI---------EIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYD------DKIS 129 (281) Q Consensus 65 ~~GvaIlsk~~~~---------~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~------~k~~ 129 (281) ..+++|++|.++. .+..++.....+.++|.+ .+.+.+..+.++|+|+|+|+.....+.. .++. T Consensus 89 g~~~~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kg~~~~--~~~i~~~~~~~in~hl~~~~~~~~~r~~~~~~i~~~l~ 166 (313) T 3mtc_A 89 GIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAI--RFQFHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQ 166 (313) T ss_dssp TEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEE--EEEETTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHCC T ss_pred EEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCEEEE--EEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 1699999816656643456664254478876688851999--99999999999996268888730443550899887665 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHH-HHHHHHC-CCCCHHHHCCCCCCCCCCEEC Q ss_conf 77655332223201476000011014686742000012104873446345-5653210-331000000133788872003 Q gi|254780288|r 130 WIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEV-RQSFQKL-QNMGFTDAIRATHDTHHLYSF 207 (281) Q Consensus 130 ~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~e-r~~~~~l-~~~gl~D~~r~~~~~~~~yT~ 207 (281) |.+.+..+.......++++|+|||||+++.+.|..++..+.....+.+.+ +..+... ...++.+.+++......++++ T Consensus 167 ~~~~~~~~~~~~~~~~~~vi~~GD~N~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~f~p~~~ 246 (313) T 3mtc_A 167 FCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYK 246 (313) T ss_dssp BCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBC T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC T ss_conf 55666665566522698699952344245654567777654024421166778999997579844699976767798966 Q ss_pred CCCCCCCCCCCCCCEE----EEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEECCC Q ss_conf 5787675255777135----699947789833320287122206867676221999995588 Q gi|254780288|r 208 WDYYADSWSKNKGIRI----DHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIPE 265 (281) Q Consensus 208 ~~~~~~~~~~n~G~RI----D~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~lp~ 265 (281) |+++...+..+.+.|+ ||||.+..- .++.++.+..+ ..+|||+||+|+|+|.- T Consensus 247 ~~~~~~~~~~~~~~R~p~w~DrIl~~~~~-~~~~~y~~~~~----~~~SDH~PV~a~F~l~~ 303 (313) T 3mtc_A 247 YDTGSDDWDTSEKCRAPAWCDRILWKGKN-ITQLSYQSHMA----LKTSDHKPVSSVFDIGV 303 (313) T ss_dssp BCTTSSSBCCSTTCCCCBCCEEEEEEESS-EEEEEEEECTT----CCSSSSCCEEEEEEEEE T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCC-CEEEEEEECCC----CCCCCCCCEEEEEEEEE T ss_conf 37788661347997785545139998798-66888785689----99987831299999987 No 13 >1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Probab=100.00 E-value=1.9e-34 Score=211.64 Aligned_cols=223 Identities=13% Similarity=0.138 Sum_probs=138.5 Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEE--CCCCCCEEEEEEECCEEEE Q ss_conf 00799871031888899899999872898899985657944589778732897899930--4776514898740313786 Q gi|254780288|r 3 VVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCG--QKSYNGVAILSKYQPIEIV 80 (281) Q Consensus 3 ~lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~--~k~~~GvaIlsk~~~~~v~ 80 (281) .+||+||||++.+.+.+.+..+|++++||||||||+...... ......+++.+... ..+..|+||+++.++..+. T Consensus 19 ~~rvl~~Nv~~~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~ai~~~~~~~~~~ 95 (245) T 1wdu_A 19 PYRVLQANLQRKKLATAELAIEAATRKAAIALIQEPYVGGAK---SMKGFRGVRVFQSTAQGDGTVKAAIAVFDHDLDVI 95 (245) T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHTCSEEEEESCCC---------CCCSSCEEEECCCCTTCCCCEEEEECCSSCEEE T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC---CCHHCCCCEEEEEECCCCCCCEEEEEEECCCCCCE T ss_conf 879992204997567999999998629988999869867665---10104553147744567998489999946765521 Q ss_pred ECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC Q ss_conf 32555644323301011000232079996310466785443101236777765533222320147600001101468674 Q gi|254780288|r 81 THLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQP 160 (281) Q Consensus 81 ~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~ 160 (281) .. +. ....+++.+.+...+..++++|+|+|.+... +. +++++...+. ...+.++|+|||||+.+.+ T Consensus 96 ~~-~~---~~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~-----~~---~~~~l~~~~~--~~~~~~~Il~GDfN~~~~~ 161 (245) T 1wdu_A 96 QY-PQ---LTTNNIVVVGIRTRAWEITLVSYYFEPDKPI-----ES---YLEQIKRVER--KMGPKRLIFGGDANAKSTW 161 (245) T ss_dssp EC-TT---TCCSSEEEEEEECSSCEEEEEEEECCTTSCS-----HH---HHHHHHHHHH--TTCSSSEEEEEECCCCCGG T ss_pred EE-CC---CCCCCEEEEEEEECCEEEEEEEEECCCCCCH-----HH---HHHHHHHHHH--HCCCCEEEEEEECCCCCCC T ss_conf 30-37---7989968999992893299999966999627-----89---9999999887--5479649997343536544 Q ss_pred CCCHHHHHCCCCCCCCHHHHHHHHHC-CCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE Q ss_conf 20000121048734463455653210-33100000013378887200357876752557771356999477898333202 Q gi|254780288|r 161 HDCYNPIIWENDACFTLEVRQSFQKL-QNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239 (281) Q Consensus 161 ~D~~~~~~~~~~~~~~~~er~~~~~l-~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~ 239 (281) .+. . ........+..+ .+.++... .....+||+..+.+.+. ..||||||+|+++...+.++ T Consensus 162 ~~~---~-------~~~~~~~~l~~~~~~~~~~~~-----~~~~~~t~~~~~~~~~~---~~rID~i~~s~~l~~~~~~~ 223 (245) T 1wdu_A 162 WGS---K-------EDDARGDQLMGTLGELGLHIL-----NEGDVPTFDTIRGGKRY---QSRVDVTFCTEDMLDLIDGW 223 (245) T ss_dssp GTC---S-------SCCHHHHHHHHHHHHHTCEEC-----CCSCCCSEEC-----CC---EECCEEEEECGGGBTTEEEE T ss_pred CCC---C-------CCCCCHHHHHHHHHHHCCCCC-----CCCCCEEEECCCCCCCC---CCCEEEEEECCHHHHHCEEE T ss_conf 466---5-------310001233334443222224-----65321012024688888---96248999893686214699 Q ss_pred EEECHHHCCCCCCCCCCEEEEEECC Q ss_conf 8712220686767622199999558 Q gi|254780288|r 240 RIDTKPRGWTKPSDHTPVIVSLDIP 264 (281) Q Consensus 240 ~I~~~~~~~~~~SDH~Pv~~~l~lp 264 (281) .|..+.. .|||+||+++|++- T Consensus 224 ~v~~~~~----~SDH~pv~~~l~l~ 244 (245) T 1wdu_A 224 RVDEDLV----SSDHNGMVFNIRLQ 244 (245) T ss_dssp EECTTSS----SSSBCCEEEEECCC T ss_pred EECCCCC----CCCCCEEEEEEEEE T ss_conf 9989999----99981089999970 No 14 >2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Probab=100.00 E-value=1.1e-34 Score=213.15 Aligned_cols=259 Identities=13% Similarity=0.150 Sum_probs=154.4 Q ss_pred CEEEEEEECCHHHHHHHHHHHHH----HHCCC--EEEEEEEECCHHHCCHHHHHHCCCEEEE--EECCCCCCEEEEEEEC Q ss_conf 07998710318888998999998----72898--8999856579445897787328978999--3047765148987403 Q gi|254780288|r 4 VTVATWNVNSIRARIHNLAAWIK----ENNPD--IICLQETKTEDKNFPFETLQSLNYHIET--CGQKSYNGVAILSKYQ 75 (281) Q Consensus 4 lrI~TwNinglr~r~~~l~~~l~----~~~pD--Ii~LQEvk~~~~~~~~~~~~~~gy~~~~--~~~k~~~GvaIlsk~~ 75 (281) +.|+||||||.+.+.+.+.+||. +..|| ||||||+++.+++++......+|+.+.. ..+.+..+++|++|.+ T Consensus 28 I~v~TWNvng~~~~~~~l~~~l~~~~~~~~~DI~viglQE~~~~~~~w~~~i~~~lg~~Y~~v~~~~~~gi~l~Vfvr~~ 107 (357) T 2xsw_A 28 LFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSSAAHGVLYMSLFIRRD 107 (357) T ss_dssp EEEEEEECTTCSSCCSCCHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEEEEEETTEEEEEEEEGG T ss_pred EEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEEEHH T ss_conf 99998816986688065898735677777999799973428865889999999972989499999830012999999756 Q ss_pred CE---------EEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHH-HHH-----------HHHHHH Q ss_conf 13---------786325556443233010110002320799963104667854431012-367-----------777655 Q gi|254780288|r 76 PI---------EIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYD-DKI-----------SWIKRF 134 (281) Q Consensus 76 ~~---------~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~-~k~-----------~~~~~l 134 (281) +. .+.+++.+... ..| .+.+.+.+.+..+.++|+|+|+|+.....|.. ++. .+...+ T Consensus 108 ~~~~v~~v~~~~v~~G~~g~~g-nKG-~v~i~~~l~~~~l~fvn~HL~ag~~~~~~R~~d~~~i~~~~~~~~~~~~~~~~ 185 (357) T 2xsw_A 108 LIWFCSEVECSTVTTRIVSQIK-TKG-ALGISFTFFGTSFLFITSHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPY 185 (357) T ss_dssp GGGGBBCCEEEEEEEEEEETTE-EEE-EEEEEEEETTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCCCSSSCCSSGG T ss_pred HHHHCCCCCCEEEECCCCCCCC-CCC-EEEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 5522676642367217788878-885-39999999987899999963899841788888798888751256555421100 Q ss_pred HHHHHHHHCCCCHHHHHHHCCCCCC-CCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCC---EECCCC Q ss_conf 3322232014760000110146867-420000121048734463455653210331000000133788872---003578 Q gi|254780288|r 135 LRFASQRLELEEPLIFAGDYNIIPQ-PHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHL---YSFWDY 210 (281) Q Consensus 135 ~~~l~~~~~~~~~vIi~GDFN~a~~-~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~---yT~~~~ 210 (281) .............+|++||||..+. +.|..+.....+..+..++.++..+...+....++|+.+++.+-. ..||++ T Consensus 186 ~~~~~~~~~~~d~vf~~GDlN~Ri~~~~~~~~~~~~~~~~~~~~~L~~~dql~~~~~~~~~f~~f~E~~i~F~PTYK~~~ 265 (357) T 2xsw_A 186 RSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDI 265 (357) T ss_dssp GCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCT T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCEEEC T ss_conf 12222221357625774777867665456799998741021389999999999985189921045358888888633867 Q ss_pred CCCCCCCCCCCEE----EEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEECCCC Q ss_conf 7675255777135----6999477898333202871222068676762219999955887 Q gi|254780288|r 211 YADSWSKNKGIRI----DHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIPEP 266 (281) Q Consensus 211 ~~~~~~~n~G~RI----D~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~lp~~ 266 (281) +.++++.+.|+|| |+||........+....+.. ......|||+||.+.|+++-. T Consensus 266 ~t~~yd~~~k~RiPsWcDRIL~~~~~~~~i~~~~Y~s--~~~~~~SDH~PV~a~F~v~v~ 323 (357) T 2xsw_A 266 GKDTYDSTSKQRTPSYTDRVLYRSRHKGDICPVSYSS--CPGIKTSDHRPVYGLFRVKVR 323 (357) T ss_dssp TSSSBCCSTTCCCCBCCEEEEEEESSTTSEEEEEEEE--CTTCCSSSSCCEEEEEEEECC T ss_pred CCCCCCCCCCEECCCCCCEEEEECCCCCCEEEEEEEE--CCCCCCCCCCCEEEEEEEEEE T ss_conf 9985457788448670338997358888779999777--788788898016889999974 No 15 >3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus RN4220} PDB: 3i46_A 3i48_A Probab=100.00 E-value=1.2e-33 Score=207.19 Aligned_cols=236 Identities=18% Similarity=0.264 Sum_probs=129.8 Q ss_pred CCEEEEEEECC----------HHHHHHHHHHHHHHHCCCEEEEEEEECCHH-HCCHHHH-HHCCCEEEEEE--------- Q ss_conf 00799871031----------888899899999872898899985657944-5897787-32897899930--------- Q gi|254780288|r 3 VVTVATWNVNS----------IRARIHNLAAWIKENNPDIICLQETKTEDK-NFPFETL-QSLNYHIETCG--------- 61 (281) Q Consensus 3 ~lrI~TwNing----------lr~r~~~l~~~l~~~~pDIi~LQEvk~~~~-~~~~~~~-~~~gy~~~~~~--------- 61 (281) .|||+||||.+ -..|.+.+.++|...+|||||||||..... ......+ ..++|.....+ T Consensus 29 ~lrv~syNi~~~~~~~~~~~~~~~R~~~i~~~i~~~~~DII~LQEV~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 108 (317) T 3i41_A 29 DLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKT 108 (317) T ss_dssp CCCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTCSEE T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC T ss_conf 68999852888766667870688999999999976699989998676735499999988865894677604665433332 Q ss_pred -------CCCCCCEEEEEEECCEEEEECCCCCC--CC-CCCC-EECCCCCCCCCEEEEEEEECCCCCCCCCCC--HHHHH Q ss_conf -------47765148987403137863255564--43-2330-101100023207999631046678544310--12367 Q gi|254780288|r 62 -------QKSYNGVAILSKYQPIEIVTHLPGDD--LD-VQAR-FIEATFTINTQTLRIGNLYLPHGNPITSTK--YDDKI 128 (281) Q Consensus 62 -------~k~~~GvaIlsk~~~~~v~~~~~~~~--~d-~~~R-~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~--~~~k~ 128 (281) ....+|++|+||+|+.++........ .+ ...| ++.+.+...+..|.|+|+|++++....... ...|. T Consensus 109 ~~~~~~~~~~~~g~~ilSr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~ntHl~~~~~~~~~~~~~~~R~ 188 (317) T 3i41_A 109 EGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRA 188 (317) T ss_dssp EESCCSSCSBCCCCEEEESSCEEEEEEEECSCCCSSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHH T ss_pred CCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCHHHHHHHHHH T ss_conf 24445554247737999858830058897367888410147446999996299799999743555677520567899999 Q ss_pred HHHHHHHHHHHHH-HCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCC-CCCHHHHCCCCCCCC---C Q ss_conf 7776553322232-0147600001101468674200001210487344634556532103-310000001337888---7 Q gi|254780288|r 129 SWIKRFLRFASQR-LELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQ-NMGFTDAIRATHDTH---H 203 (281) Q Consensus 129 ~~~~~l~~~l~~~-~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~-~~gl~D~~r~~~~~~---~ 203 (281) .+++.+...+... ...+.++|+|||||+.+.... ++.+. ..++.|+++..++.. . T Consensus 189 ~q~~~i~~~~~~~~~~~~~~vil~GDfN~~~~~~~--------------------~~~~~~~~~~~d~~~~~~~~~~~~~ 248 (317) T 3i41_A 189 EQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPE--------------------FKDMLKNLNVNDVLYAGHNSTWDPQ 248 (317) T ss_dssp HHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTSHH--------------------HHHHHHHHTBCCCEEEECSCSBCTT T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHH--------------------HHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 99999998665540146675798444788988779--------------------9999986698653001477654576 Q ss_pred CEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHC-EEEEC-HH-----------HCCCCCCCCCCEEEEE Q ss_conf 20035787675255777135699947789833320-28712-22-----------0686767622199999 Q gi|254780288|r 204 LYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHS-ARIDT-KP-----------RGWTKPSDHTPVIVSL 261 (281) Q Consensus 204 ~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~-~~I~~-~~-----------~~~~~~SDH~Pv~~~l 261 (281) .++|+.+ .+..+...||||||+|++....... ..+.. .. .....+|||+||+|-+ T Consensus 249 ~~~~~~~---~~~~~~~~riDyI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~A~~ 316 (317) T 3i41_A 249 SNSIAKY---NYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAAAYYYVYNDFSDHYPIKAYS 316 (317) T ss_dssp TCHHHHH---HCTTCCCBCCEEEEEBTTSCCCSSEEEEECCCCCSCEEEEETTEEEEECCSSSBCCEEEEE T ss_pred CCCCCCC---CCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE T ss_conf 5765565---6578987148899975740264311004886236631012444567789967610648993 No 16 >3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Probab=100.00 E-value=1.3e-32 Score=201.46 Aligned_cols=227 Identities=16% Similarity=0.145 Sum_probs=131.4 Q ss_pred CEEEEEEEC---------CHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEE---CCCCCCEEEE Q ss_conf 079987103---------1888899899999872898899985657944589778732897899930---4776514898 Q gi|254780288|r 4 VTVATWNVN---------SIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCG---QKSYNGVAIL 71 (281) Q Consensus 4 lrI~TwNin---------glr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~---~k~~~GvaIl 71 (281) |||+||||. .+..|.+.+.++|++++|||||||||. ..++ .......++.+...+ .....|.+++ T Consensus 1 lrI~T~Ni~~~~~~~~~~~~~~R~~~i~~~i~~~~~DIi~LQEv~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (257) T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVR--PNQV-RDLKAYTTFTCLSAEREGDGQGEGLAIL 77 (257) T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEEC--HHHH-HHHHHHSSSEEEEEESSSSSCSCEEEEE T ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC--HHHH-HHHHHHHCCCCEEEECCCCCCCCEEEEE T ss_conf 989999678277887545899999999999987499999997887--7999-9987511454024402577776157899 Q ss_pred EEECCEEEEEC---CCCCC--------CCCCCCE---ECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 74031378632---55564--------4323301---0110002320799963104667854431012367777655332 Q gi|254780288|r 72 SKYQPIEIVTH---LPGDD--------LDVQARF---IEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRF 137 (281) Q Consensus 72 sk~~~~~v~~~---~~~~~--------~d~~~R~---i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~ 137 (281) .+.....+... ..... .....|. ...........+.++|+|.+..... .+..+...+... T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~------~~~~~~~~~~~~ 151 (257) T 3l1w_A 78 YNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINVHLDHISAH------ARLAGMTVILEE 151 (257) T ss_dssp ECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSSCHH------HHHHHHHHHHHH T ss_pred ECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCHH------HHHHHHHHHHHH T ss_conf 72676640442122046674302124544333135788888527883168874266766316------799999998889 Q ss_pred HHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCC Q ss_conf 22320147600001101468674200001210487344634556532103310000001337888720035787675255 Q gi|254780288|r 138 ASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSK 217 (281) Q Consensus 138 l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~ 217 (281) +.. ...+.|+|+|||||..+... ...+...++.|+++...+....+||++.+.. ... T Consensus 152 ~~~-~~~~~~~iv~GDfN~~~~~~---------------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~ 208 (257) T 3l1w_A 152 LHD-KIAQYPTLLMGDFNAESGEE---------------------VHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-KPW 208 (257) T ss_dssp THH-HHHHSCEEEEEECCCCTTSH---------------------HHHHHTTTCEEGGGTSEEESCSCCBCTTCTT-CCG T ss_pred HHH-CCCCCCEEEECCCCCCCCHH---------------------HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCC-CCC T ss_conf 985-47789768834568874305---------------------8999873250445520556886642565566-777 Q ss_pred CCCCEEEEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEECCC Q ss_conf 777135699947789833320287122206867676221999995588 Q gi|254780288|r 218 NKGIRIDHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIPE 265 (281) Q Consensus 218 n~G~RID~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~lp~ 265 (281) +.+.||||||+|+. .+.++.+......+..+|||+||+|+|++.. T Consensus 209 ~~~~rID~i~~s~~---~~~~~~~~~~~~~~~~~SDH~PV~a~~~~k~ 253 (257) T 3l1w_A 209 AELEEIDYIYVKGW---QVQQTASLTDSIDGRFPSDHFPLEAEVAGEN 253 (257) T ss_dssp GGCBCCEEEEEESE---EEEEEEECCCCBTTBCSSSBCCEEEEEEEC- T ss_pred CCCCEEEEEEEECC---EEEEEEEECCCCCCCCCCCCCCEEEEEEEEC T ss_conf 88940789998388---3579999488768998785416899999302 No 17 >2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Probab=99.97 E-value=1.3e-31 Score=195.86 Aligned_cols=229 Identities=10% Similarity=0.141 Sum_probs=134.5 Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEEEC Q ss_conf 00799871031888899899999872898899985657944589778732897899930477651489874031378632 Q gi|254780288|r 3 VVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTH 82 (281) Q Consensus 3 ~lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v~~~ 82 (281) .|||++|||||++++.+.+.++++++++|||||||++.. .||.... .+..|+||+++.++...... T Consensus 7 ~LrI~~~N~~~~~~~~~~l~~~~~~~~~DIv~lQE~~~~-----------~~~~~~~---~~~~g~ai~v~~~~~~~~~~ 72 (240) T 2ei9_A 7 RLRIGQINLGGAEDATRELPSIARDLGLDIVLVQEQYSM-----------VGFLAQC---GAHPKAGVYIRNRVLPCAVL 72 (240) T ss_dssp EEEEEEEECTTCHHHHHTHHHHHHHHTCSEEEEESCCTT-----------SSSEECC---SSSCSEEEEESSTTSCEEEC T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCC-----------CCCCCEE---CCCCCEEEEEECCCCCCCCC T ss_conf 368999807984889999999999759999999655607-----------8850224---58996899995687553210 Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC Q ss_conf 55564432330101100023207999631046678544310123677776553322232014760000110146867420 Q gi|254780288|r 83 LPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHD 162 (281) Q Consensus 83 ~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D 162 (281) -. ..+ ...+.+...+..+.|+|+|+|.+.+.. .++..+...+.. ..+.++|+|||||+.+...+ T Consensus 73 ~~--~~~----~~~~~~~~~~~~~~i~svY~pp~~~~~--------~~~~~l~~~~~~--~~~~~~ii~GDfN~~~~~w~ 136 (240) T 2ei9_A 73 HH--LSS----THITVVHIGGWDLYMVSAYFQYSDPID--------PYLHRLGNILDR--LRGARVVICADTNAHSPLWH 136 (240) T ss_dssp GG--GCC----SSEEEEEETTTTEEEEEEECCTTSCSH--------HHHHHHHHHHHH--TTTSCEEEEEECCCCCGGGT T ss_pred CC--CCC----CCEEEEEECCEEEEEEEEECCCCCCHH--------HHHHHHHHHHHH--CCCCCEEEECHHCCCCCCCC T ss_conf 14--786----657999979928999999849798558--------999999999986--69996698301104560004 Q ss_pred CHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCEEEE Q ss_conf 00012104873446345565321033100000013378887200357876752557771356999477898333202871 Q gi|254780288|r 163 CYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARID 242 (281) Q Consensus 163 ~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~~I~ 242 (281) .. ............ .....|.+.....-++..++....|||++.++ +.||||+|+|+.+ ++.++.|. T Consensus 137 ~~-~~~~~~~~~~~~---~~~~~l~~~~~~~~l~~~~~~~~~~Tf~~~~~-------~~~ID~~~~s~~~--~~~~~~v~ 203 (240) T 2ei9_A 137 SL-PRHYVGRGQEVA---DRRAKMEDFIGARRLVVHNADGHLPTFSTANG-------ESYVDVTLSTRGV--RVSEWRVT 203 (240) T ss_dssp CC-HHHHSSSCHHHH---HHHHHHHHHHHHTTCEECCCTTCCCSEEETTE-------EECCEEEEECTTC--CEEEEEEC T ss_pred CC-CCCCCCCCCCCC---HHHHHHHHHHHHCCEEEECCCCCCEECCCCCC-------CCEECEEEECCCE--EEEEEEEC T ss_conf 65-434445555442---33556887653155177315788201668998-------8784649807970--16658966 Q ss_pred CHHHCCCCCCCCCCEEEEEECCCCCCC-CCCCCCCCCC Q ss_conf 222068676762219999955887766-6653671111 Q gi|254780288|r 243 TKPRGWTKPSDHTPVIVSLDIPEPRKK-QQDSTSQNMK 279 (281) Q Consensus 243 ~~~~~~~~~SDH~Pv~~~l~lp~~~~~-~~~~~~~~~~ 279 (281) .. ..|||.||.+++.+..+.+. .+..++-..+ T Consensus 204 ~~-----~~SDH~~I~~~l~~~~~~~~~~~~~~r~~~~ 236 (240) T 2ei9_A 204 NE-----SSSDHRLIVFGVGGGTTGERDEDEEARSDLR 236 (240) T ss_dssp SC-----CSSSBCCEEEEEEC----------------- T ss_pred CC-----CCCCCHHEEEEEECCCCCCCCCCCCCCCCCC T ss_conf 89-----9999545699997787889999888758899 No 18 >1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Probab=99.97 E-value=1.7e-32 Score=200.80 Aligned_cols=252 Identities=16% Similarity=0.100 Sum_probs=152.7 Q ss_pred CEEEEEEECCHHHHHHHHHHHH---HHHCCCE--EEEEEEE-CCHHHC--------------CHHHH-----HHCCCEEE Q ss_conf 0799871031888899899999---8728988--9998565-794458--------------97787-----32897899 Q gi|254780288|r 4 VTVATWNVNSIRARIHNLAAWI---KENNPDI--ICLQETK-TEDKNF--------------PFETL-----QSLNYHIE 58 (281) Q Consensus 4 lrI~TwNinglr~r~~~l~~~l---~~~~pDI--i~LQEvk-~~~~~~--------------~~~~~-----~~~gy~~~ 58 (281) +.|+||||||.+.+ ..+.+|| ....||| |||||+. .....+ ....+ ...+|... T Consensus 27 I~v~TWNVng~~~~-~~l~~~l~~~~~~~~DI~viglQEi~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~Y~~v 105 (347) T 1i9z_A 27 IFVASYNLNGCSAT-TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQL 105 (347) T ss_dssp EEEEEEECTTCCCC-SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHTCCSSCCEEEE T ss_pred EEEEEECCCCCCCC-CCHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 99999806997387-16787736678999999999840176361334313673356789999999741411579987999 Q ss_pred EEECCCCCCEEEEEEECCEE---------EEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHH Q ss_conf 93047765148987403137---------863255564432330101100023207999631046678544310123677 Q gi|254780288|r 59 TCGQKSYNGVAILSKYQPIE---------IVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKIS 129 (281) Q Consensus 59 ~~~~k~~~GvaIlsk~~~~~---------v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~ 129 (281) ...+.+..|++|++|.++.. +.+++.+. .+..| .+.+.+.+.+..+.++|+|+|+|......|...+.. T Consensus 106 ~~~~~~g~~l~vf~r~~~~~~i~~v~~~~v~~g~~g~-~gnKG-aV~i~~~i~~~~l~fvn~HL~ag~~~~~~R~~~~~~ 183 (347) T 1i9z_A 106 RSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGV-SGNKG-AVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRT 183 (347) T ss_dssp EEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC-----CCE-EEEEEEEETTEEEEEEEEECCCCSSCHHHHHHHHHH T ss_pred EECCCCCEEEEEEEECHHHCCCCCCCEEEEECCCCCC-CCCCE-EEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHH T ss_conf 8504032399999986576257731110898256871-27852-699999998999999970678776328889988999 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCC---CCCEE Q ss_conf 776553322232014760000110146867420000121048734463455653210331000000133788---87200 Q gi|254780288|r 130 WIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDT---HHLYS 206 (281) Q Consensus 130 ~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~---~~~yT 206 (281) +++.+...........+++++|||||..+...|.......... .+ .+..+..+-..+.+..++|+.++.. -.+++ T Consensus 184 i~~~l~~~~~~~~~~~d~v~~~GDlN~r~~~~~~~~~~~~~~~-~~-~~l~~~dql~~~~~~~~~f~~~~E~~i~F~Pty 261 (347) T 1i9z_A 184 IASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQG-KL-SYLFEYDQLNKQMLTGKVFPFFSELPITFPPTY 261 (347) T ss_dssp HHHHCCCGGGCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTT-CH-HHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCB T ss_pred HHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCC-CH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 9997323455444577536874364411014516668876516-65-789987587765412442468742887889998 Q ss_pred CCCCCCCCCCCCCCCEE----EEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEECCCCC Q ss_conf 35787675255777135----69994778983332028712220686767622199999558877 Q gi|254780288|r 207 FWDYYADSWSKNKGIRI----DHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIPEPR 267 (281) Q Consensus 207 ~~~~~~~~~~~n~G~RI----D~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~lp~~~ 267 (281) ||+++.+.+.++.|+|| |+||.+..+. .. ++.. .....|||+||+|.|++.-+. T Consensus 262 k~~~~~~~y~~~~~~RiPswcDRIL~~~~~~--~~-~Y~s----~~~~~SDH~PV~a~f~~~v~~ 319 (347) T 1i9z_A 262 KFDIGTDIYDTSDKHRVPAWTDRILYRGELV--PH-SYQS----VPLYYSDHRPIYATYEANIVK 319 (347) T ss_dssp CBCTTSSCBCCSTTCCCCBCCEEEEEESSCE--EE-EEEE----CCCCSSSBCCEEEEEEEEEEE T ss_pred CCCCCCCCCCCCCCEECCCCCCEEEEECCCE--EE-EEEC----CCCCCCCCCCEEEEEEEEEEE T ss_conf 3618998667889836725578798508722--65-7603----677778854689999999999 No 19 >3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Probab=99.97 E-value=1.8e-30 Score=189.39 Aligned_cols=259 Identities=18% Similarity=0.165 Sum_probs=129.8 Q ss_pred CCEEEEEEE--C----------------CHHHHHHHHHHHHHHHCCCEEEEEEEECCH-HHCCHHHHHHCCCEEEEEEC- Q ss_conf 007998710--3----------------188889989999987289889998565794-45897787328978999304- Q gi|254780288|r 3 VVTVATWNV--N----------------SIRARIHNLAAWIKENNPDIICLQETKTED-KNFPFETLQSLNYHIETCGQ- 62 (281) Q Consensus 3 ~lrI~TwNi--n----------------glr~r~~~l~~~l~~~~pDIi~LQEvk~~~-~~~~~~~~~~~gy~~~~~~~- 62 (281) .+||||||| + .+..|.+.+.+.|.+.+|||||||||.... .++....+...||+..+... T Consensus 31 ~lrV~SyNVL~~~~~~~~~~~~~~~~~l~~~~R~~~I~~~I~~~~pDII~LQEV~~~~~~~~l~~~l~~~g~~~~~~~~~ 110 (398) T 3ngq_A 31 SFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKS 110 (398) T ss_dssp EEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESC T ss_pred EEEEEEECCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECC T ss_conf 18999668576556773336899816649999999999999866998899974765323699999998629835876246 Q ss_pred ----------CCCCCEEEEE---EECCEEEEEC-CCC------CCCC----------C-----------C--CCEECCCC Q ss_conf ----------7765148987---4031378632-555------6443----------2-----------3--30101100 Q gi|254780288|r 63 ----------KSYNGVAILS---KYQPIEIVTH-LPG------DDLD----------V-----------Q--ARFIEATF 99 (281) Q Consensus 63 ----------k~~~GvaIls---k~~~~~v~~~-~~~------~~~d----------~-----------~--~R~i~~~i 99 (281) ++..||||++ |+++++.... +.. ...+ . . ...+.... T Consensus 111 ~~~~~~~~~~~~~~gvai~~~~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (398) T 3ngq_A 111 RAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIH 190 (398) T ss_dssp TTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTTTCCCEEEEEEEEECGGGC-------- T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEEC T ss_conf 76544567776663079998667662566778861676666665530011010013321035664113542221022101 Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-------------CCCCHHHHHHHCCCCCCCCCCHHH Q ss_conf 0232079996310466785443101236777765533222320-------------147600001101468674200001 Q gi|254780288|r 100 TINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRL-------------ELEEPLIFAGDYNIIPQPHDCYNP 166 (281) Q Consensus 100 ~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~-------------~~~~~vIi~GDFN~a~~~~D~~~~ 166 (281) ...+..+.|+|+|++...... +.+..+...+...+.... ....++|+|||||..+.+. .... T Consensus 191 ~~~~~~~~v~ntHL~~~~~~~----~~r~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~GDfN~~~~~~-~~~~ 265 (398) T 3ngq_A 191 AADKQLLIVANAHMHWDPEYS----DVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSG-VVEY 265 (398) T ss_dssp ---CCEEEEEEEECCCCTTCH----HHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTTSH-HHHH T ss_pred CCCCCEEEEEEECCCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCH-HHHH T ss_conf 578856999996655566530----78999999999999999987665320123445687448714546787647-8999 Q ss_pred HHCCC-CCCCCHHHH----HHHHHC--------CCC------CHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEE Q ss_conf 21048-734463455----653210--------331------00000013378887200357876752557771356999 Q gi|254780288|r 167 IIWEN-DACFTLEVR----QSFQKL--------QNM------GFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIM 227 (281) Q Consensus 167 ~~~~~-~~~~~~~er----~~~~~l--------~~~------gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il 227 (281) -...+ ...+..... ...... ... .+.+++ ......||+|. .+.+.|||||| T Consensus 266 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~t~~~-------~~~~~riDyI~ 335 (398) T 3ngq_A 266 LSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAY---ENNLMPYTNYT-------FDFKGVIDYIF 335 (398) T ss_dssp HHHTEEETTCGGGCC-----GGGGGCC-------CCEEECSCCEEETT---TTTSSSCSEEC-------SSCEECCEEEE T ss_pred HHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEC-------CCCCCEEEEEE T ss_conf 870897743103444034444444565543344664445676554334---57878752024-------99895388999 Q ss_pred ECHHHHHHHHCEE-EE-CHH---------HCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 4778983332028-71-222---------06867676221999995588776666536711114 Q gi|254780288|r 228 LSPEATSLLHSAR-ID-TKP---------RGWTKPSDHTPVIVSLDIPEPRKKQQDSTSQNMKP 280 (281) Q Consensus 228 ~s~~l~~~v~~~~-I~-~~~---------~~~~~~SDH~Pv~~~l~lp~~~~~~~~~~~~~~~~ 280 (281) +|+++.. +.... +. ... .....+|||+||+|+|+|.. +..+.++.+.+| T Consensus 336 ~s~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~SDH~pV~a~~~l~~---~~~~~~~~~~~~ 395 (398) T 3ngq_A 336 YSKTHMN-VEGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELHP---PLLPLVNGVHLP 395 (398) T ss_dssp EETTTEE-EEEEECCCCHHHHHHTTCCSSCBTTBCSSBCCEEEEEEECC---C----------- T ss_pred EECCCCC-EEEEECCCCHHHHCCCCCCCCCCCCCCCCCHHEEEEEEECC---CCCCCCCCCCCC T ss_conf 7376463-44420567778712000257778899885140799999718---998877766788 No 20 >2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Probab=99.97 E-value=5.1e-31 Score=192.45 Aligned_cols=244 Identities=16% Similarity=0.173 Sum_probs=126.2 Q ss_pred CCCEEEEEEECC----------HHHHHHHHHHHHHHHCCCEEEEEEEECCHHH-CCHHHHH-HCCCEEE----------- Q ss_conf 700799871031----------8888998999998728988999856579445-8977873-2897899----------- Q gi|254780288|r 2 SVVTVATWNVNS----------IRARIHNLAAWIKENNPDIICLQETKTEDKN-FPFETLQ-SLNYHIE----------- 58 (281) Q Consensus 2 ~~lrI~TwNing----------lr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~-~~~~~~~-~~gy~~~----------- 58 (281) .++||+||||+. ...|.+.+++.|...+|||||||||...... .....+. .+++... T Consensus 8 ~~l~i~T~Ni~~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIi~LQEV~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 87 (306) T 2ddr_A 8 DTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEWD 87 (306) T ss_dssp CEEEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTSCCSTTSS T ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCC T ss_conf 97799988688576777887058999999999987369998999847777637899998877535100110124677642 Q ss_pred ---EE---ECCCCCCEEEEEEECCEEEEEC-CCCC-CCC--CCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCC--HHH Q ss_conf ---93---0477651489874031378632-5556-443--2330101100023207999631046678544310--123 Q gi|254780288|r 59 ---TC---GQKSYNGVAILSKYQPIEIVTH-LPGD-DLD--VQARFIEATFTINTQTLRIGNLYLPHGNPITSTK--YDD 126 (281) Q Consensus 59 ---~~---~~k~~~GvaIlsk~~~~~v~~~-~~~~-~~d--~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~--~~~ 126 (281) .. +.....|++++||++....... ++.. ..+ ....++.+.+...+..+.|+|+|++++....... ... T Consensus 88 ~~~~~~~~~~~~~~g~~~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~~ 167 (306) T 2ddr_A 88 KTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASV 167 (306) T ss_dssp EEEESCCTTCSSCCCCEEEESSCEEEEEEEECSCCC----CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHH T ss_pred EEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHH T ss_conf 15512445513264379998236400045650567776533452389999836995899999687766543012356789 Q ss_pred HHHHHHHHHHHHHHH-HCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCC--C Q ss_conf 677776553322232-0147600001101468674200001210487344634556532103310000001337888--7 Q gi|254780288|r 127 KISWIKRFLRFASQR-LELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTH--H 203 (281) Q Consensus 127 k~~~~~~l~~~l~~~-~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~--~ 203 (281) +..+++.+...+.+. .....|+|+|||||+.+...+... ..+.... .+......+.. . T Consensus 168 ~~~q~~~~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~----------~~~~~~~---------~~~~~~~~~~~~~~ 228 (306) T 2ddr_A 168 RTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNN----------DSEYASM---------FKTLNASVPSYTGH 228 (306) T ss_dssp HHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCT----------TSHHHHH---------HHHHTBCCCEEEEC T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHH----------HHHHHHH---------HHHHCCCCCCCCCC T ss_conf 9999998776665421346885799714678866422301----------3788889---------87634443222578 Q ss_pred CEECCCCC----CCCCCCCCCCEEEEEEECHHHHHHHH-CEEEECH----------H--HCCCCCCCCCCEEEEEECC Q ss_conf 20035787----67525577713569994778983332-0287122----------2--0686767622199999558 Q gi|254780288|r 204 LYSFWDYY----ADSWSKNKGIRIDHIMLSPEATSLLH-SARIDTK----------P--RGWTKPSDHTPVIVSLDIP 264 (281) Q Consensus 204 ~yT~~~~~----~~~~~~n~G~RID~il~s~~l~~~v~-~~~I~~~----------~--~~~~~~SDH~Pv~~~l~lp 264 (281) .+||.+.. ...+..+.+.||||||+|+.+..... ...+... . .....+|||+||+++|+|- T Consensus 229 ~~t~~~~~~~~~~~~~~~~~~~riDyI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~a~~~lk 306 (306) T 2ddr_A 229 TATWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATISMK 306 (306) T ss_dssp SCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSCCCSEEEEEECCCCCCCEEEEETTEEEEECCSCSSCCEEEEEEC- T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCEECCCCCCCCCCCCCCCHHEEEEEEEC T ss_conf 865266556555656578988568899978620375222005761144431001223577889988614269999979 No 21 >3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Probab=99.97 E-value=4.4e-31 Score=192.81 Aligned_cols=233 Identities=19% Similarity=0.139 Sum_probs=127.2 Q ss_pred CCCEEEEEEE-----------CCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEE-EC----CCC Q ss_conf 7007998710-----------3188889989999987289889998565794458977873289789993-04----776 Q gi|254780288|r 2 SVVTVATWNV-----------NSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETC-GQ----KSY 65 (281) Q Consensus 2 ~~lrI~TwNi-----------nglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~-~~----k~~ 65 (281) .+|||+|||| ++...|++.++++|++.+|||||||||. +.++ ......+++..+.. .. ... T Consensus 5 ~~lrV~s~Ni~~~~~~~~~~~~~~~~R~~~i~~~i~~~~pDIi~LQEv~--~~~~-~~l~~~l~~~~~~~~~~~~~~~~~ 81 (298) T 3mpr_A 5 TSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECF--LHQL-KDMKEALPGYDYIGVGRDDGKDKG 81 (298) T ss_dssp EEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBC--HHHH-HHHHHHSTTEEEECCCTTTSSSSS T ss_pred CCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC--HHHH-HHHHHHCCCCCEEEEECCCCCCCC T ss_conf 9669998978807688865466799999999999985799889999333--7898-999976645705764024787664 Q ss_pred CCEEEEEEECCEEEEEC--CCCC-CC--------CCCCCEE---CCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHH Q ss_conf 51489874031378632--5556-44--------3233010---110002320799963104667854431012367777 Q gi|254780288|r 66 NGVAILSKYQPIEIVTH--LPGD-DL--------DVQARFI---EATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWI 131 (281) Q Consensus 66 ~GvaIlsk~~~~~v~~~--~~~~-~~--------d~~~R~i---~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~ 131 (281) .|++|++|.....+... +... .. ....|.. .......+..+.++++|.+.... .. +.+.. T Consensus 82 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---~~---~~~~~ 155 (298) T 3mpr_A 82 EHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGFEFLFFNLHMDHIGK---KA---RVESA 155 (298) T ss_dssp CBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCH---HH---HHHHH T ss_pred CEEEEEEECCCCCEECEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCH---HH---HHHHH T ss_conf 2148998377432100023302422234444444333310479999853787169998424555615---77---89998 Q ss_pred HHHHHH-HHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCC-CCCCEECCC Q ss_conf 655332-223201476000011014686742000012104873446345565321033100000013378-887200357 Q gi|254780288|r 132 KRFLRF-ASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHD-THHLYSFWD 209 (281) Q Consensus 132 ~~l~~~-l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~-~~~~yT~~~ 209 (281) ...... .......+.|+|+|||||+.+.+.. ....+...++.|+++..++ ....+||.+ T Consensus 156 ~~~~~~~~~~~~~~~~~~i~~GDfN~~~~~~~-------------------~~~~~~~~~~~d~~~~~~~~~~~~~t~~~ 216 (298) T 3mpr_A 156 FLVQEKMKELGRGKNLPAILTGDFNVDQTHQS-------------------YDAFVSKGVLCDSYEKCDYRYALNGTFNN 216 (298) T ss_dssp HHHHHHHHHTTTTSCCCEEEEEECSSCTTSHH-------------------HHHHHTTSSSEEHHHHCSEEECSSCSBCT T ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCCCCHH-------------------HHHHHHCCHHHHHHHHHCCCCCCCCCCCC T ss_conf 88888886530257887897073498988366-------------------76554302035578761656789887554 Q ss_pred CCCCCCCCCCCCEEEEEEECHHHHHHHHCEEEECH------------------------HHCCCCCCCCCCEEEEEECCC Q ss_conf 87675255777135699947789833320287122------------------------206867676221999995588 Q gi|254780288|r 210 YYADSWSKNKGIRIDHIMLSPEATSLLHSARIDTK------------------------PRGWTKPSDHTPVIVSLDIPE 265 (281) Q Consensus 210 ~~~~~~~~n~G~RID~il~s~~l~~~v~~~~I~~~------------------------~~~~~~~SDH~Pv~~~l~lp~ 265 (281) +... .+.+.||||||+|+++. +..+.|... ......+|||+||+++|+++- T Consensus 217 ~~~~---~~~~~riDyI~~s~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~~~~~~ 291 (298) T 3mpr_A 217 FDPN---SFTESRIDHIFVSPSFH--VKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVFDL 291 (298) T ss_dssp TCTT---CCCSCCCEEEEECTTSE--EEEEEECCCCEEEECC----------------CCEEEECSSSBCCEEEEEEECS T ss_pred CCCC---CCCCCEEEEEEECCCCC--EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC T ss_conf 4678---88886156899679740--467899604432322222344444432223445678899784220899999937 Q ss_pred CC Q ss_conf 77 Q gi|254780288|r 266 PR 267 (281) Q Consensus 266 ~~ 267 (281) -. T Consensus 292 ~~ 293 (298) T 3mpr_A 292 EH 293 (298) T ss_dssp SC T ss_pred CC T ss_conf 65 No 22 >1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Probab=99.97 E-value=4.6e-31 Score=192.69 Aligned_cols=237 Identities=15% Similarity=0.180 Sum_probs=125.2 Q ss_pred CCEEEEEEECCH----------HHHHHHHHHHHHHHCCCEEEEEEEECCHHH-CCHHHHHH-CCCEEEEEE--------- Q ss_conf 007998710318----------888998999998728988999856579445-89778732-897899930--------- Q gi|254780288|r 3 VVTVATWNVNSI----------RARIHNLAAWIKENNPDIICLQETKTEDKN-FPFETLQS-LNYHIETCG--------- 61 (281) Q Consensus 3 ~lrI~TwNingl----------r~r~~~l~~~l~~~~pDIi~LQEvk~~~~~-~~~~~~~~-~gy~~~~~~--------- 61 (281) .|||+||||+++ +.|.+.+.+.|..++|||||||||...... ...+.+.. ++|.....+ T Consensus 10 ~lki~swNv~~~~~~~~~~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (301) T 1zwx_A 10 NFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGRSKHGWDKT 89 (301) T ss_dssp SCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTCSEE T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCE T ss_conf 77999776787666657873589999999999875699989998477734079999987654162122025566664421 Q ss_pred -------CCCCCCEEEEEEECCEEEEECCCCCCCC---CCCC-EECCCCCCCCCEEEEEEEECCCCCCCCCCC--HHHHH Q ss_conf -------4776514898740313786325556443---2330-101100023207999631046678544310--12367 Q gi|254780288|r 62 -------QKSYNGVAILSKYQPIEIVTHLPGDDLD---VQAR-FIEATFTINTQTLRIGNLYLPHGNPITSTK--YDDKI 128 (281) Q Consensus 62 -------~k~~~GvaIlsk~~~~~v~~~~~~~~~d---~~~R-~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~--~~~k~ 128 (281) .....|++++||++.............. ...| ++.+.+...+..|.|+|+|++++.+..... ...|. T Consensus 90 ~~~~~~~~~~~~g~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~~R~ 169 (301) T 1zwx_A 90 EGNYSNFALEDGGVAVVSQWPIVEKSQHIFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRA 169 (301) T ss_dssp EC-----CCBCCCCEEEESSCEEEEEEEECSCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHH T ss_pred ECCCCCCEECCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCCHHHHHHHHH T ss_conf 01345530405548999535643323686056887310136218999996699599999954556787531357899999 Q ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCC-CCCHHHHCCCCCCCCCCEE Q ss_conf 77765533222320-147600001101468674200001210487344634556532103-3100000013378887200 Q gi|254780288|r 129 SWIKRFLRFASQRL-ELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQ-NMGFTDAIRATHDTHHLYS 206 (281) Q Consensus 129 ~~~~~l~~~l~~~~-~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~-~~gl~D~~r~~~~~~~~yT 206 (281) .+++.+.+.+.... ..+.++|||||||+.+.... +..+. ..+..+...... ..+| T Consensus 170 ~q~~~~~~~l~~~~~~~~~~vii~GDfN~~~~~~~--------------------~~~~~~~~~~~~~~~~~~---~~~~ 226 (301) T 1zwx_A 170 EQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDE--------------------YHDMLKLLNVSSPANFNG---QMAT 226 (301) T ss_dssp HHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHH--------------------HHHHHHHHTBCCCTTCCT---TSCS T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHH--------------------HHHHHHHCCCCCCCCCCC---CCCC T ss_conf 99999775433201467515999846698988679--------------------999997558764100257---7775 Q ss_pred C----CCCCCCCCCCCCCCEEEEEEECHHHHHHHHC-EEEECH------------HHCCCCCCCCCCEEEEEE Q ss_conf 3----5787675255777135699947789833320-287122------------206867676221999995 Q gi|254780288|r 207 F----WDYYADSWSKNKGIRIDHIMLSPEATSLLHS-ARIDTK------------PRGWTKPSDHTPVIVSLD 262 (281) Q Consensus 207 ~----~~~~~~~~~~n~G~RID~il~s~~l~~~v~~-~~I~~~------------~~~~~~~SDH~Pv~~~l~ 262 (281) | .++.......+.+.||||||+|+........ ..+... ......+|||+||+|-.+ T Consensus 227 ~~~~~~~~~~~~~~~~~~~riDyI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PVvA~~~ 299 (301) T 1zwx_A 227 WDPTTNSMLKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVGFTD 299 (301) T ss_dssp BCTTTCHHHHHHCTTSCCBCCEEEEEBTTSCCCSCEEEEECCCCCCCEEEEETTEEEEECCSSSSCCEEEEEC T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEC T ss_conf 3442245556565689984488999847414543212048862266421134445688899487205589972 No 23 >3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Probab=99.97 E-value=9.3e-31 Score=190.95 Aligned_cols=229 Identities=20% Similarity=0.287 Sum_probs=118.6 Q ss_pred CCCEEEEEEE---------CCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEE---E---CCCCC Q ss_conf 7007998710---------3188889989999987289889998565794458977873289789993---0---47765 Q gi|254780288|r 2 SVVTVATWNV---------NSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETC---G---QKSYN 66 (281) Q Consensus 2 ~~lrI~TwNi---------nglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~---~---~k~~~ 66 (281) +.|||+|||| |.++.|++.+.++|++.+|||||||||+. .++ ......++...+.. . ..+ . T Consensus 2 ~~lri~TyNI~~~~~~d~~~~~~~R~~~i~~~i~~~~~DIi~LQEv~~--~~~-~~l~~~l~~~~~~~~~~~~~~~~~-~ 77 (267) T 3g6s_A 2 TDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLH--NQF-QDLRAGLPEYDGIGVGRDDGKTAG-E 77 (267) T ss_dssp EEEEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCH--HHH-HHHHHHCTTEEEECCCTTTSSSSS-C T ss_pred CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCH--HHH-HHHHHHHCCCCEEEEECCCCCCCC-C T ss_conf 964999895783888855368999999999999837999999985766--898-999986100650567414667787-2 Q ss_pred CEEEEEEECCEEEEEC---CCCCCCC---------CCCCE---ECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHH Q ss_conf 1489874031378632---5556443---------23301---0110002320799963104667854431012367777 Q gi|254780288|r 67 GVAILSKYQPIEIVTH---LPGDDLD---------VQARF---IEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWI 131 (281) Q Consensus 67 GvaIlsk~~~~~v~~~---~~~~~~d---------~~~R~---i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~ 131 (281) |++++++.....+... ....... ...+. ........+....++++|...... ..+..+. T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 151 (267) T 3g6s_A 78 YAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVGE------EARRQSA 151 (267) T ss_dssp BCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCH------HHHHHHH T ss_pred EEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCHH------HHHHHHH T ss_conf 1489996775635542010146542221211333444304678864205888247897324542101------6789999 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCH--HHHCCCCC-CCCCCEECC Q ss_conf 655332223201476000011014686742000012104873446345565321033100--00001337-888720035 Q gi|254780288|r 132 KRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGF--TDAIRATH-DTHHLYSFW 208 (281) Q Consensus 132 ~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl--~D~~r~~~-~~~~~yT~~ 208 (281) ..+.... .....+.|+|+|||||..+... .+..+...+. .+.+.... .....+||+ T Consensus 152 ~~~~~~~-~~~~~~~~~i~~GDfN~~~~~~--------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (267) T 3g6s_A 152 LLIIRKI-KEIVGERPAVVTGDFNVTDASD--------------------AYETITTNEFVMKDAYKTAARVTGVDYTFH 210 (267) T ss_dssp HHHHHHH-HHHTTTSCEEEEEECSSCTTSH--------------------HHHHHHSSSSCCEEHHHHCSEEEECSCSBC T ss_pred HHHHHHH-HHHCCCCCCEECCCCCCCCCCH--------------------HHHHHHHCCCCCCHHHHHCCCCCCCCCCCC T ss_conf 9999876-5302689721326678897668--------------------999998536542012332134555676437 Q ss_pred CCCCCCCCCCCCCEEEEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEECCCC Q ss_conf 7876752557771356999477898333202871222068676762219999955887 Q gi|254780288|r 209 DYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIPEP 266 (281) Q Consensus 209 ~~~~~~~~~n~G~RID~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~lp~~ 266 (281) ++. ....+.|+||||||+|+++ ++.++.|..+.. ...+|||+||+++|+|..- T Consensus 211 ~~~--~~~~~~~~riD~I~~s~~l--~~~~~~v~~~~~-~~~~SDH~PV~~~~~lk~~ 263 (267) T 3g6s_A 211 DFA--RIPAEDCEKIDFIFVTPQV--LVKSCEIPAEVP-EALLSDHNPQLADLELEHH 263 (267) T ss_dssp TTT--TSCGGGCCCCEEEEECTTS--EEEEEEECCCCS-SSCCCSBCCEEEEEEEC-- T ss_pred CCC--CCCCCCCCCEEEEEECCCE--EEEEEEECCCCC-CCCCCCCCCEEEEEEEEEC T ss_conf 877--6677888417799988994--799999757889-9987854204899999954 No 24 >2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Probab=99.97 E-value=4.5e-31 Score=192.74 Aligned_cols=217 Identities=18% Similarity=0.097 Sum_probs=121.1 Q ss_pred CCCEEEEEEECCHHHH-----HHHHHHHHH-HHCCCEEEEEEEECCHHHCCH--HHHHH--CCC---------------E Q ss_conf 7007998710318888-----998999998-728988999856579445897--78732--897---------------8 Q gi|254780288|r 2 SVVTVATWNVNSIRAR-----IHNLAAWIK-ENNPDIICLQETKTEDKNFPF--ETLQS--LNY---------------H 56 (281) Q Consensus 2 ~~lrI~TwNinglr~r-----~~~l~~~l~-~~~pDIi~LQEvk~~~~~~~~--~~~~~--~gy---------------~ 56 (281) +.+||+||||+|.++. ...+..+|. ..+|||||||||+........ ..... ..+ . T Consensus 14 ~~lri~TwNv~~~~~~~~~~~~~~~~~~i~~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262) T 2f1n_A 14 TDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQQV 93 (262) T ss_dssp GGCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSSSCEE T ss_pred CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCCEE T ss_conf 76299998489677876553589999999737898999997478610230566655402465245543111112477247 Q ss_pred EEEEE----CCCCCCEEEEEEECCEEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHH Q ss_conf 99930----47765148987403137863255564432330101100023207999631046678544310123677776 Q gi|254780288|r 57 IETCG----QKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIK 132 (281) Q Consensus 57 ~~~~~----~k~~~GvaIlsk~~~~~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~ 132 (281) +.+.. ..+.+|++++||.++..+...-+. ..+++.+. ......+.++|+|++.+...+... ..++.. T Consensus 94 ~~~~~~~~~~~~~~g~~ilsk~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~Hl~~~~~~~~~~---~~~~~~ 164 (262) T 2f1n_A 94 YIYFSAVDALGGRVNLALVSNRRADEVFVLSPV---RQGGRPLL---GIRIGNDAFFTAHAIAMRNNDAPA---LVEEVY 164 (262) T ss_dssp EEEEECSCSSSCSSCEEEEESSCCSEEEEECCS---STTCCCEE---EEEETTEEEEEEECCSSSSCSHHH---HHHHHH T ss_pred EEEEECCCCCCCEECCEEEECCCCCCCEECCCC---CCCCCEEE---EEEECCCEEEEEECCCCCCCCHHH---HHHHHH T ss_conf 898631344463412289976561003220787---65674357---887177269999737888730899---999999 Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCC Q ss_conf 55332223201476000011014686742000012104873446345565321033100000013378887200357876 Q gi|254780288|r 133 RFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYA 212 (281) Q Consensus 133 ~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~ 212 (281) .+............++|+|||||+.|.+. ...+..++.|.++..++.. +||+ T Consensus 165 ~~~~~~~~~~~~~~~~iv~GDfN~~~~~~----------------------~~~~~~~~~~~~~~~~~~~--~t~~---- 216 (262) T 2f1n_A 165 NFFRDSRDPVHQALNWMILGDFNREPADL----------------------EMNLTVPVRRASEIISPAA--ATQT---- 216 (262) T ss_dssp HHHHTCSSHHHHTCEEEEEEECSSCHHHH----------------------HTTSCHHHHHTEEEECCSS--CSBT---- T ss_pred HHHHHHHHHHCCCCCEEECCCCCCCCHHH----------------------HHHHHHHHHHHHHHCCCCC--CCCC---- T ss_conf 99999988536799757347646571567----------------------7766534333203128998--7579---- Q ss_pred CCCCCCCCCEEEEEEECHHHHHHHHCEE--EECHHHCCCCCCCCCCEEEEE Q ss_conf 7525577713569994778983332028--712220686767622199999 Q gi|254780288|r 213 DSWSKNKGIRIDHIMLSPEATSLLHSAR--IDTKPRGWTKPSDHTPVIVSL 261 (281) Q Consensus 213 ~~~~~n~G~RID~il~s~~l~~~v~~~~--I~~~~~~~~~~SDH~Pv~~~l 261 (281) .|.||||||+|+++..+..... +.........+|||+||.+.| T Consensus 217 ------~~~riD~i~~s~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~~ 261 (262) T 2f1n_A 217 ------SQRTLDYAVAGNSVAFRPSPLQAGIVYGARRTQISSDHFPVGVSR 261 (262) T ss_dssp ------TSCCCEEEEEEESSCCCCCCCEEEETTTTSCCCCSCSBCCEEEEC T ss_pred ------CCCEEEEEEECCCHHCCCCEEEEEEEECCCCCCCCCCCHHEEEEE T ss_conf ------998299999808165352136899850335899648854238984 No 25 >1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B Probab=99.95 E-value=2.4e-27 Score=171.76 Aligned_cols=222 Identities=18% Similarity=0.086 Sum_probs=117.6 Q ss_pred CCCCEEEEEEECCHHH-----HHHHHHHH-HHHHCCCEEEEEEEECCHHHC--CHHHHHHCCC--E-------------- Q ss_conf 9700799871031888-----89989999-987289889998565794458--9778732897--8-------------- Q gi|254780288|r 1 MSVVTVATWNVNSIRA-----RIHNLAAW-IKENNPDIICLQETKTEDKNF--PFETLQSLNY--H-------------- 56 (281) Q Consensus 1 m~~lrI~TwNinglr~-----r~~~l~~~-l~~~~pDIi~LQEvk~~~~~~--~~~~~~~~gy--~-------------- 56 (281) ++.+||+||||+++.. ....+.++ +...+|||||||||+...... ........++ . T Consensus 2 ~~~frv~TwNi~~~~~~~~~~~~~~~~~~~~~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (261) T 1sr4_B 2 LSDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNM 81 (261) T ss_dssp GGGSCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSSCCE T ss_pred CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCE T ss_conf 98778999979958787555422899999975679799999916742341156887766417653301220256567751 Q ss_pred -EEE-EE---CCCCCCEEEEEEECCEEEEECCCCCCCCCCCCEE-CCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHH Q ss_conf -999-30---4776514898740313786325556443233010-11000232079996310466785443101236777 Q gi|254780288|r 57 -IET-CG---QKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFI-EATFTINTQTLRIGNLYLPHGNPITSTKYDDKISW 130 (281) Q Consensus 57 -~~~-~~---~k~~~GvaIlsk~~~~~v~~~~~~~~~d~~~R~i-~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~ 130 (281) ..+ .. .+.+.|++|+||.|+.+.... .....+...|.+ .+.+ ....++++|+.+....+... ..... T Consensus 82 ~~~~~~~~~~~~~~~g~~ils~~~~~~~~~~-~~~~~~~~~R~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (261) T 1sr4_B 82 VYIYYSRLDVGANRVNLAIVSRRQADEAFIV-HSDSSVLQSRPAVGIRI----GTDVFFTVHALATGGSDAVS--LIRNI 154 (261) T ss_dssp EEEEEECCCTTTSCSCEEEEESSCCSEEEEE-CCCCCSSCCCCEEEEEE----TTEEEEEEECCTTTTTTHHH--HHHHH T ss_pred EEEEEECCCCCCCEEEEEEEECCCCCCEEEC-CCCCCCCCCCCEEEEEE----ECCCEEEEEEECCCCCCCHH--HHHHH T ss_conf 5899752345564243799979876333783-68976656530599998----13522338864588753489--99999 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCC Q ss_conf 76553322232014760000110146867420000121048734463455653210331000000133788872003578 Q gi|254780288|r 131 IKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDY 210 (281) Q Consensus 131 ~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~ 210 (281) ...+..........+.|+|+|||||+.|.+ ..+..+.+.|+.|+++..++.. .||++ T Consensus 155 ~~~~~~~~~~~~~~~~~~il~GDfN~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~--~t~~~- 211 (261) T 1sr4_B 155 FTTFNSSSSPPERRVYSWMVVGDFNRAPAN--------------------LEVALRQEPAVSENTIIIAPTE--PTHRS- 211 (261) T ss_dssp HHHHHC---CGGGGGCEEEEEEECSSCHHH--------------------HHHHHTTSHHHHHTCEEECCSS--CSBTT- T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCH--------------------HHHHHHHHCCCCCCEEECCCCC--CCCCC- T ss_conf 999999998752568876984345887521--------------------5789876135544132047777--85698- Q ss_pred CCCCCCCCCCCEEEEEEECHHHHHHHHC------EEEECHHHCCCCCCCCCCEEEEE Q ss_conf 7675255777135699947789833320------28712220686767622199999 Q gi|254780288|r 211 YADSWSKNKGIRIDHIMLSPEATSLLHS------ARIDTKPRGWTKPSDHTPVIVSL 261 (281) Q Consensus 211 ~~~~~~~n~G~RID~il~s~~l~~~v~~------~~I~~~~~~~~~~SDH~Pv~~~l 261 (281) +.||||||+++........ +.+.........+|||+||-..+ T Consensus 212 ---------~~~iD~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~~ 259 (261) T 1sr4_B 212 ---------GNILDYAILHDAHLPRREQARERIGASLMLNQLRSQITSDHFPVSFVR 259 (261) T ss_dssp ---------SCCCEEEEEECTTSCTTCGGGCCEEEEECGGGCSSCCSSSBCCEEEEE T ss_pred ---------CCCEEEEEECCCCCCEEECCCCCEEEEEECCCCCCCCCCCCHHHEEEE T ss_conf ---------985748997670103032144202334412334799628765038884 No 26 >2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D* Probab=99.94 E-value=1.4e-26 Score=167.55 Aligned_cols=223 Identities=15% Similarity=0.083 Sum_probs=105.2 Q ss_pred CEEEEEEEC--CHH-HHHHHHHHHHHH--HCCCEEEEEEEECCHHHCCHHHHH------HCCCEEEEEECCCC----CCE Q ss_conf 079987103--188-889989999987--289889998565794458977873------28978999304776----514 Q gi|254780288|r 4 VTVATWNVN--SIR-ARIHNLAAWIKE--NNPDIICLQETKTEDKNFPFETLQ------SLNYHIETCGQKSY----NGV 68 (281) Q Consensus 4 lrI~TwNin--glr-~r~~~l~~~l~~--~~pDIi~LQEvk~~~~~~~~~~~~------~~gy~~~~~~~k~~----~Gv 68 (281) |||+||||+ |.. .+...+.+.|.+ .+|||||||||+..+.......+. ...|.+...+..+. .++ T Consensus 1 lrI~swNi~~~g~~~~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260) T 2a40_B 1 LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERY 80 (260) T ss_dssp CEEEEEEEEEESHHHHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCBCSSSCCBEE T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEE T ss_conf 98999966834778666399999999972799989999422477718999998766325884168855777766557457 Q ss_pred EEEEEECCEEEEEC--CCCCCCC----CCCCE-ECC---CCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 89874031378632--5556443----23301-011---00023207999631046678544310123677776553322 Q gi|254780288|r 69 AILSKYQPIEIVTH--LPGDDLD----VQARF-IEA---TFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFA 138 (281) Q Consensus 69 aIlsk~~~~~v~~~--~~~~~~d----~~~R~-i~~---~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l 138 (281) +++.+.....+... .+..... ...|. +.+ .....+..+.++++|+..+.. ..+..+...+.+.+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~h~~~~~~------~~~~~~~~~~~~~~ 154 (260) T 2a40_B 81 LFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDA------VAEINSLYDVYLDV 154 (260) T ss_dssp EEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGGH------HHHHHHHHHHHHHH T ss_pred EEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCH------HHHHHHHHHHHHHH T ss_conf 999605530466520124566677554333110278898526773589998504786324------89999999999999 Q ss_pred HHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCH-HHHC-CCCCCCCCCEECCCCCCCCCC Q ss_conf 23201476000011014686742000012104873446345565321033100-0000-133788872003578767525 Q gi|254780288|r 139 SQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGF-TDAI-RATHDTHHLYSFWDYYADSWS 216 (281) Q Consensus 139 ~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl-~D~~-r~~~~~~~~yT~~~~~~~~~~ 216 (281) .. ...+.|+|+|||||..+.... ++.+...++ .+.. ....+... ++ .. T Consensus 155 ~~-~~~~~~~iv~GDfN~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~ 204 (260) T 2a40_B 155 QQ-KWHLNDVMLMGDFNADCSYVT--------------------SSQWSSIRLRTSSTFQWLIPDSA--DT-------TA 204 (260) T ss_dssp HH-HHCCCCEEEEEECCCSTTTSC--------------------GGGGGGCHHHHSTTEEESSCTTC--CC-------BS T ss_pred HH-HCCCCCEEEECCCCCCCCCCH--------------------HHHHHHHCCCCCCCCCCCCCCCC--CC-------CC T ss_conf 86-365888899466666777525--------------------78898613522222112478888--53-------34 Q ss_pred CCCCCEEEEEEECHHHHHHHH---CEEEECHHH-------CCCCCCCCCCEEEEEE Q ss_conf 577713569994778983332---028712220-------6867676221999995 Q gi|254780288|r 217 KNKGIRIDHIMLSPEATSLLH---SARIDTKPR-------GWTKPSDHTPVIVSLD 262 (281) Q Consensus 217 ~n~G~RID~il~s~~l~~~v~---~~~I~~~~~-------~~~~~SDH~Pv~~~l~ 262 (281) .+.++||||||+|+.+..... .+.+..... ....+|||+||+++|. T Consensus 205 ~~~~~~iD~i~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SDH~PV~~~ls 260 (260) T 2a40_B 205 TSTNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT 260 (260) T ss_dssp SSCCCCCEEEEEESHHHHHHBCTTCCEECCHHHHTTCCHHHHHHHCSBCCEEEEBC T ss_pred CCCCCCEEEEEECHHHHCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC T ss_conf 79898604999761683662714702675131102566345897187558899979 No 27 >2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Probab=77.65 E-value=2.6 Score=19.82 Aligned_cols=38 Identities=16% Similarity=0.298 Sum_probs=26.3 Q ss_pred CCCCEEEEEEEC---CHHHHHHHHHHHHH---HHCCCEEEEEEE Q ss_conf 970079987103---18888998999998---728988999856 Q gi|254780288|r 1 MSVVTVATWNVN---SIRARIHNLAAWIK---ENNPDIICLQET 38 (281) Q Consensus 1 m~~lrI~TwNin---glr~r~~~l~~~l~---~~~pDIi~LQEv 38 (281) |+++||+..-.+ .....++++.++++ +..+|+|++.|+ T Consensus 1 M~~~kiAl~Q~~~~~~~~~N~~~~~~~i~~A~~~gadlvvfPE~ 44 (276) T 2w1v_A 1 MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPEC 44 (276) T ss_dssp CCEEEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCSEEECCTT T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCC T ss_conf 99759999978589999999999999999999883969998878 No 28 >2e11_A Hydrolase; dimethylarsenic inhibitor complex, cacodylate; 1.73A {Xanthomonas campestris PV} Probab=54.95 E-value=9.4 Score=16.72 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=25.7 Q ss_pred CCCCEEEEEEEC----CHHHHHHHHHHHHHH--HCCCEEEEEEE Q ss_conf 970079987103----188889989999987--28988999856 Q gi|254780288|r 1 MSVVTVATWNVN----SIRARIHNLAAWIKE--NNPDIICLQET 38 (281) Q Consensus 1 m~~lrI~TwNin----glr~r~~~l~~~l~~--~~pDIi~LQEv 38 (281) |+.|||+-.-.+ -....++.+.++|++ ..+|+|++.|. T Consensus 1 m~~~kvalvQ~~~~~~d~~~Nl~~i~~~i~~a~~~~dlvv~PE~ 44 (266) T 2e11_A 1 MHDLRISLVQGSTRWHDPAGNRDYYGALLEPLAGQSDLVILPET 44 (266) T ss_dssp CCCEEEEEEECCCCTTCHHHHHHHHHHHHGGGTTTCSEEECCTT T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCC T ss_conf 99509999918899869999999999999997389989996887 No 29 >3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Probab=41.23 E-value=16 Score=15.47 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=27.0 Q ss_pred CCCCEEEEEEECC----HHHHHHHHHHHHH---HHCCCEEEEEEE Q ss_conf 9700799871031----8888998999998---728988999856 Q gi|254780288|r 1 MSVVTVATWNVNS----IRARIHNLAAWIK---ENNPDIICLQET 38 (281) Q Consensus 1 m~~lrI~TwNing----lr~r~~~l~~~l~---~~~pDIi~LQEv 38 (281) |+.|||+.-.+|. +...++++.+.++ +..+|+|++-|. T Consensus 3 m~~~rIa~aQ~n~~~gD~~~N~~~i~~~i~~A~~~gadlvvfPEL 47 (634) T 3ilv_A 3 LSTIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPEL 47 (634) T ss_dssp -CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTT T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC T ss_conf 786089999578986879999999999999999879969995888 No 30 >3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Probab=32.61 E-value=22 Score=14.67 Aligned_cols=38 Identities=21% Similarity=0.455 Sum_probs=26.4 Q ss_pred CCC-CEEEEEEECC----HHHHHHHHHHHH---HHHCCCEEEEEEE Q ss_conf 970-0799871031----888899899999---8728988999856 Q gi|254780288|r 1 MSV-VTVATWNVNS----IRARIHNLAAWI---KENNPDIICLQET 38 (281) Q Consensus 1 m~~-lrI~TwNing----lr~r~~~l~~~l---~~~~pDIi~LQEv 38 (281) |+| |||+---+|. +.+.++++.+++ ++..+|+|++-|. T Consensus 1 m~~~mKIAlaQ~n~~~GD~~~N~~ki~~~i~~A~~~GAdLvVfPEl 46 (590) T 3n05_A 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEM 46 (590) T ss_dssp -CEEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCTT T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC T ss_conf 9865789899789986769999999999999999779959998888 No 31 >1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initiative, midwest center for structural genomics, PSI, MCSG; 2.40A {Aquifex aeolicus VF5} SCOP: d.159.1.8 Probab=32.34 E-value=8.7 Score=16.91 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=10.9 Q ss_pred HHHHHHHHHHCCCCHHHHHHHCC Q ss_conf 55332223201476000011014 Q gi|254780288|r 133 RFLRFASQRLELEEPLIFAGDYN 155 (281) Q Consensus 133 ~l~~~l~~~~~~~~~vIi~GDFN 155 (281) .+.+.+.+....+.-++++|||= T Consensus 32 ~ii~~wn~~V~~~D~v~~LGD~~ 54 (195) T 1xm7_A 32 VILTNLLKVLKPEDTLYHLGDFT 54 (195) T ss_dssp HHHHHHHTTCCTTCEEEECSCCB T ss_pred HHHHHHHHHCCCCCEEEEECCCC T ss_conf 99999984179898899927510 No 32 >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O Probab=31.11 E-value=23 Score=14.53 Aligned_cols=35 Identities=9% Similarity=0.282 Sum_probs=23.8 Q ss_pred CCCCEEEEEEECCH-HHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 97007998710318-888998999998728988999856 Q gi|254780288|r 1 MSVVTVATWNVNSI-RARIHNLAAWIKENNPDIICLQET 38 (281) Q Consensus 1 m~~lrI~TwNingl-r~r~~~l~~~l~~~~pDIi~LQEv 38 (281) |+.|||. |||+ |--.--+..++...+.+|+++.+. T Consensus 1 M~kikIg---INGFGRIGR~vlR~~l~~~~i~ivaINd~ 36 (337) T 3e5r_O 1 MGKIKIG---INGFGRIGRLVARVALQSEDVELVAVNDP 36 (337) T ss_dssp -CCEEEE---EECCSHHHHHHHHHHHTCSSEEEEEEECS T ss_pred CCCEEEE---EECCCHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 9960999---98982799999999964899789998689 No 33 >1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Probab=27.42 E-value=27 Score=14.15 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=23.4 Q ss_pred CCEEEEEEECC----HHHHHHHHHHHHHH---H--CCCEEEEEEE Q ss_conf 00799871031----88889989999987---2--8988999856 Q gi|254780288|r 3 VVTVATWNVNS----IRARIHNLAAWIKE---N--NPDIICLQET 38 (281) Q Consensus 3 ~lrI~TwNing----lr~r~~~l~~~l~~---~--~pDIi~LQEv 38 (281) .|||+...++. ..+.++++.++|.+ + ++|+|++.|. T Consensus 10 ~~kiAl~Q~~~~~~d~~~N~~~i~~~i~~A~~~~~gadlvvfPE~ 54 (291) T 1f89_A 10 KIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPEC 54 (291) T ss_dssp CEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTT T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCC T ss_conf 756999957588779999999999999999844998989987786 No 34 >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Probab=26.93 E-value=24 Score=14.41 Aligned_cols=25 Identities=12% Similarity=-0.061 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCC Q ss_conf 7655332223201476000011014 Q gi|254780288|r 131 IKRFLRFASQRLELEEPLIFAGDYN 155 (281) Q Consensus 131 ~~~l~~~l~~~~~~~~~vIi~GDFN 155 (281) +.++.+.+.+....+.+++++|-.= T Consensus 71 ~~~~i~~L~~~~~~~v~iivGG~~~ 95 (137) T 1ccw_A 71 CKGLRQKCDEAGLEGILLYVGGNIV 95 (137) T ss_dssp HTTHHHHHHHTTCTTCEEEEEESCS T ss_pred HHHHHHHHHHCCCCCCEEEEECCCC T ss_conf 9999999997499999799978878 No 35 >2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, protein structure initiative, GAPDH, oxidoreductase; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* Probab=26.78 E-value=28 Score=14.09 Aligned_cols=35 Identities=11% Similarity=0.280 Sum_probs=23.4 Q ss_pred CCCCEEEEEEECCH-HHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 97007998710318-888998999998728988999856 Q gi|254780288|r 1 MSVVTVATWNVNSI-RARIHNLAAWIKENNPDIICLQET 38 (281) Q Consensus 1 m~~lrI~TwNingl-r~r~~~l~~~l~~~~pDIi~LQEv 38 (281) |+.+||. |||+ |--.--+..++.+.+.+|+++.+. T Consensus 9 m~~~kIg---INGFGRIGR~vlR~~l~~~~~eivaINd~ 44 (345) T 2b4r_O 9 MAATKLG---INGFGRIGRLVFRAAFGRKDIEVVAINDP 44 (345) T ss_dssp --CEEEE---EECCSHHHHHHHHHHHTCSSEEEEEEECT T ss_pred EEEEEEE---EECCCHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 2534899---96786789999999850899489998899 No 36 >2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H Probab=21.14 E-value=36 Score=13.45 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=10.1 Q ss_pred HHHHHHHHHHCCCEEEEEE Q ss_conf 9899999872898899985 Q gi|254780288|r 19 HNLAAWIKENNPDIICLQE 37 (281) Q Consensus 19 ~~l~~~l~~~~pDIi~LQE 37 (281) +.+.+++++.+.-||++.| T Consensus 36 ~~~~~l~~~~d~giI~Ite 54 (109) T 2d00_A 36 SLLETLVERGGYALVAVDE 54 (109) T ss_dssp HHHHHHHHHCCCSEEEEET T ss_pred HHHHHHHHCCCEEEEEECH T ss_conf 9999998489859999818 Done!