HHSEARCH alignment of GI: 254780288 and SCOP domain: d2a40b1

Alignment
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.96  E-value=1.4e-28  Score=177.42  Aligned_cols=225  Identities=15%  Similarity=0.066  Sum_probs=115.4

Q ss_pred             CEEEEEEECCH--H-HHHHHHHHHHHH--HCCCEEEEEEEECCHHHCCHHHHHH----C--CCEEEEEECC----CCCCE
Q ss_conf             07998710318--8-889989999987--2898899985657944589778732----8--9789993047----76514
Q gi|254780288|r    4 VTVATWNVNSI--R-ARIHNLAAWIKE--NNPDIICLQETKTEDKNFPFETLQS----L--NYHIETCGQK----SYNGV   68 (281)
Q Consensus         4 lrI~TwNingl--r-~r~~~l~~~l~~--~~pDIi~LQEvk~~~~~~~~~~~~~----~--gy~~~~~~~k----~~~Gv   68 (281)
                      |||+||||+++  . .+.+...++|.+  ++|||||||||+..........+..    .  .+.+......    ...+.
T Consensus         1 lrI~s~Ni~~~~~~~~~~~~~~~~l~~~i~~~DIi~LQEv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (260)
T d2a40b1           1 LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERY   80 (260)
T ss_dssp             CEEEEEEEEEESHHHHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCBCSSSCCBEE
T ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCE
T ss_conf             98999968834778666599999999874799989999623477416999998643114675036741567777543100


Q ss_pred             EEEEEECCEEEEECCCCCCCC--C----CCC---E-ECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             898740313786325556443--2----330---1-01100023207999631046678544310123677776553322
Q gi|254780288|r   69 AILSKYQPIEIVTHLPGDDLD--V----QAR---F-IEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFA  138 (281)
Q Consensus        69 aIlsk~~~~~v~~~~~~~~~d--~----~~R---~-i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l  138 (281)
                      +++.+.....+..........  .    ..+   . ....+......+.+++.|....      ....+..+...+.+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  154 (260)
T d2a40b1          81 LFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPS------DAVAEINSLYDVYLDV  154 (260)
T ss_dssp             EEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGG------GHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCEECCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCC------HHHHHHHHHHHHHHHH
T ss_conf             2541254420111200013555676543332310212110345624799986415543------0368888899999999


Q ss_pred             HHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf             23201476000011014686742000012104873446345565321033100000013378887200357876752557
Q gi|254780288|r  139 SQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKN  218 (281)
Q Consensus       139 ~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n  218 (281)
                      ... ..+.|+|+|||||..+....                    ++.+...++.+.+.........+||+..       +
T Consensus       155 ~~~-~~~~~~iv~GDfN~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  206 (260)
T d2a40b1         155 QQK-WHLNDVMLMGDFNADCSYVT--------------------SSQWSSIRLRTSSTFQWLIPDSADTTAT-------S  206 (260)
T ss_dssp             HHH-HCCCCEEEEEECCCSTTTSC--------------------GGGGGGCHHHHSTTEEESSCTTCCCBSS-------S
T ss_pred             HHH-CCCCCEEECCCCCCCCCCHH--------------------HHHHHHHCCCCCCCCCCCCCCCCCCCCC-------C
T ss_conf             863-45788797665567865234--------------------5555441432221111267888763347-------9


Q ss_pred             CCCEEEEEEECHHHHHHHHC---EEEECHHH-------CCCCCCCCCCEEEEEE
Q ss_conf             77135699947789833320---28712220-------6867676221999995
Q gi|254780288|r  219 KGIRIDHIMLSPEATSLLHS---ARIDTKPR-------GWTKPSDHTPVIVSLD  262 (281)
Q Consensus       219 ~G~RID~il~s~~l~~~v~~---~~I~~~~~-------~~~~~SDH~Pv~~~l~  262 (281)
                      .++||||||+|+.+......   ..+.....       ....+|||+||+++|.
T Consensus       207 ~~~~iD~i~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SDH~PV~v~ls  260 (260)
T d2a40b1         207 TNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT  260 (260)
T ss_dssp             CCCCCEEEEEESHHHHHHBCTTCCEECCHHHHTTCCHHHHHHHCSBCCEEEEBC
T ss_pred             CCCCEEEEEECCHHHCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             998556899684461542632501442023212556335798077426799959


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Deoxyribonuclease I
species: Cow (Bos taurus) [TaxId: 9913]