HHSEARCH alignment of GI: 254780288 and SCOP domain: d2ddra1

Alignment
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]}
Probab=99.98  E-value=1.9e-33  Score=204.78  Aligned_cols=244  Identities=17%  Similarity=0.176  Sum_probs=130.1

Q ss_pred             CCCEEEEEEECC----------HHHHHHHHHHHHHHHCCCEEEEEEEECCHH--HCCHHHHHHCCCEEEEEE--------
Q ss_conf             700799871031----------888899899999872898899985657944--589778732897899930--------
Q gi|254780288|r    2 SVVTVATWNVNS----------IRARIHNLAAWIKENNPDIICLQETKTEDK--NFPFETLQSLNYHIETCG--------   61 (281)
Q Consensus         2 ~~lrI~TwNing----------lr~r~~~l~~~l~~~~pDIi~LQEvk~~~~--~~~~~~~~~~gy~~~~~~--------   61 (281)
                      .++||+||||.+          .+.|.+.+.+.|..++|||||||||.....  .+.......++|.....+        
T Consensus         2 ~tl~v~s~Nv~~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   81 (299)
T d2ddra1           2 DTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEWD   81 (299)
T ss_dssp             CEEEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTSCCSTTSS
T ss_pred             CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf             96699987788465466887278899999999987569988999926776527888888887567403321345555554


Q ss_pred             ---------CCCCCCEEEEEEECCEEEEECCCCCC--CCC--CCCEECCCCCCCCCEEEEEEEECCCCCCCCCCC--HHH
Q ss_conf             ---------47765148987403137863255564--432--330101100023207999631046678544310--123
Q gi|254780288|r   62 ---------QKSYNGVAILSKYQPIEIVTHLPGDD--LDV--QARFIEATFTINTQTLRIGNLYLPHGNPITSTK--YDD  126 (281)
Q Consensus        62 ---------~k~~~GvaIlsk~~~~~v~~~~~~~~--~d~--~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~--~~~  126 (281)
                               ....+|++++||+|+...........  .+.  ...++...+...+..|.|+|+|++++.+.....  ...
T Consensus        82 ~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~~  161 (299)
T d2ddra1          82 KTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASV  161 (299)
T ss_dssp             EEEESCCTTCSSCCCCEEEESSCEEEEEEEECSCCC----CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHH
T ss_pred             EEEECCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf             02301234310264169999861113134553113575543420699999806980899997246678775310246889


Q ss_pred             HHHHHHHHHHHHHH-HHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCC-----CCHHHHCCCCCC
Q ss_conf             67777655332223-201476000011014686742000012104873446345565321033-----100000013378
Q gi|254780288|r  127 KISWIKRFLRFASQ-RLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQN-----MGFTDAIRATHD  200 (281)
Q Consensus       127 k~~~~~~l~~~l~~-~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~-----~gl~D~~r~~~~  200 (281)
                      |..++..+...+.. ....+.|+|+|||||+.+.+.+......          -+..++.+..     .+...+++   +
T Consensus       162 r~~q~~~~~~~~~~~~~~~~~~vi~~GDfN~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~t~~---~  228 (299)
T d2ddra1         162 RTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSE----------YASMFKTLNASVPSYTGHTATWD---A  228 (299)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCTTSH----------HHHHHHHHTBCCCEEEECSCSBC---T
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCHHH----------HHHHHHHHCCCCCCCCCCCCCCC---C
T ss_conf             9999998765655420256651799723788865144401045----------66666432001222257765434---3


Q ss_pred             CCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHC-----------EEEECH--HHCCCCCCCCCCEEEEEEC
Q ss_conf             88720035787675255777135699947789833320-----------287122--2068676762219999955
Q gi|254780288|r  201 THHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHS-----------ARIDTK--PRGWTKPSDHTPVIVSLDI  263 (281)
Q Consensus       201 ~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~-----------~~I~~~--~~~~~~~SDH~Pv~~~l~l  263 (281)
                      ....++.     ..+..+.+.||||||+|+.+......           +.....  ......+|||+||+++|+|
T Consensus       229 ~~~~~~~-----~~~~~~~~~riDyI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~a~l~L  299 (299)
T d2ddra1         229 TTNSIAK-----YNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATISM  299 (299)
T ss_dssp             TTCHHHH-----HHCTTSCCBCCEEEEEBTTSCCCSEEEEEECCCCCCCEEEEETTEEEEECCSCSSCCEEEEEEC
T ss_pred             CCCCCCC-----CCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf             3344445-----4568899842568995551048632424785024332200122257788995862228999989


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Bacillus cereus [TaxId: 1396]