Query         gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 281
No_of_seqs    149 out of 3224
Neff          7.9 
Searched_HMMs 13730
Date          Wed Jun  1 03:50:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780288.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1hd7a_ d.151.1.1 (A:) DNA rep 100.0       0       0  292.5  15.8  252    2-263    17-275 (275)
  2 d1akoa_ d.151.1.1 (A:) DNA-rep 100.0       0       0  276.5  19.1  259    4-262     1-267 (268)
  3 d1vyba_ d.151.1.1 (A:) Endonuc 100.0 1.4E-45       0  273.1  14.4  231    2-262     4-236 (236)
  4 d2imqx1 d.151.1.2 (X:3-282) Sa 100.0 1.2E-39 8.5E-44  239.6  10.0  251    2-264     5-279 (280)
  5 d1wdua_ d.151.1.1 (A:) Endonuc 100.0 1.6E-34 1.1E-38  210.8  14.1  223    3-264     2-227 (228)
  6 d1zwxa1 d.151.1.3 (A:41-333) S 100.0 7.4E-33 5.4E-37  201.4  12.6  242    1-262     2-293 (293)
  7 d2ddra1 d.151.1.3 (A:7-305) Sp 100.0 1.9E-33 1.4E-37  204.8   8.4  244    2-263     2-299 (299)
  8 d2f1na1 d.151.1.1 (A:1-250) Cy 100.0 3.8E-33 2.7E-37  203.1   7.8  217    1-260     2-249 (250)
  9 d1sr4b_ d.151.1.1 (B:) Cytolet 100.0 5.7E-30 4.1E-34  185.2  11.2  223    1-262     2-260 (261)
 10 d2a40b1 d.151.1.1 (B:1-260) De 100.0 1.4E-28   1E-32  177.4  14.4  225    4-262     1-260 (260)
 11 d1i9za_ d.151.1.2 (A:) Synapto 100.0 2.4E-29 1.8E-33  181.7   8.4  252    4-267    27-319 (345)
 12 d1x1na1 c.1.8.1 (A:2-524) Amyl  42.5    0.43 3.1E-05   22.9  -3.9   21   17-37     48-68  (523)
 13 d1xm7a_ d.159.1.8 (A:) Hypothe  37.8     3.6 0.00026   17.7   0.3   24  132-155    31-54  (188)
 14 d1f89a_ d.160.1.1 (A:) hypothe  26.4      16  0.0012   14.0   3.2   36    3-38      9-53  (281)
 15 d1ccwa_ c.23.6.1 (A:) Glutamat  25.5      15  0.0011   14.2   1.8   25  131-155    71-95  (137)

No 1  
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=0  Score=292.50  Aligned_cols=252  Identities=29%  Similarity=0.480  Sum_probs=176.4

Q ss_pred             CCCEEEEEEECCHHHHHH-HHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEE----EECCCCCCEEEEEEECC
Q ss_conf             700799871031888899-8999998728988999856579445897787328978999----30477651489874031
Q gi|254780288|r    2 SVVTVATWNVNSIRARIH-NLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIET----CGQKSYNGVAILSKYQP   76 (281)
Q Consensus         2 ~~lrI~TwNinglr~r~~-~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~----~~~k~~~GvaIlsk~~~   76 (281)
                      ++|||+||||||+|++.+ .+.+||++++||||||||||+.++++..+.....+|.+..    .+.++..|++++++..+
T Consensus        17 ~~mki~S~NvnGlr~~~~~~~~~~i~~~~pDIi~LQE~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (275)
T d1hd7a_          17 ATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCP   96 (275)
T ss_dssp             CCEEEEEEECSSHHHHHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC-----CCCEEEEESSCC
T ss_pred             CCEEEEEEEECCHHHHHHCCHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCCC
T ss_conf             76799999825687613435899997589989998822058233888787165764356643202333344201215686


Q ss_pred             EEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf             37863255564432330101100023207999631046678544310123677776553322232014760000110146
Q gi|254780288|r   77 IEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNI  156 (281)
Q Consensus        77 ~~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~  156 (281)
                      ..+.........+.++.+.....  ....+....++.+.  . ...++.+.. ....+..........+.+++++||||+
T Consensus        97 ~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gd~n~  170 (275)
T d1hd7a_          97 LKVSYGIGDEEHDQEGRVIVAEF--DSFVLVTAYVPNAG--R-GLVRLEYRQ-RWDEAFRKFLKGLASRKPLVLCGDLNV  170 (275)
T ss_dssp             SEEEESCSCGGGSSSSCEEEEEC--SSCEEEEEECCCCC--G-GGTTHHHHH-HHHHHHHHHHHHHHHHSCEEEEEECSC
T ss_pred             EEEEECCCCCCCHHHHHEEEEEE--CCEEEEEEEEEECC--C-CCCCHHHHH-HHCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf             03664233453022321124553--13043102454046--6-541013333-310020000100124775376112245


Q ss_pred             CCCCCCCHHHHHCCCCCCCCHHHHHHHHHC-CCCCHHHHCCCCCC-CCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHH
Q ss_conf             867420000121048734463455653210-33100000013378-8872003578767525577713569994778983
Q gi|254780288|r  157 IPQPHDCYNPIIWENDACFTLEVRQSFQKL-QNMGFTDAIRATHD-THHLYSFWDYYADSWSKNKGIRIDHIMLSPEATS  234 (281)
Q Consensus       157 a~~~~D~~~~~~~~~~~~~~~~er~~~~~l-~~~gl~D~~r~~~~-~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~  234 (281)
                      ++.+.+..+........+....|...|..+ .+.||.|+||..+| .+..||||+++.+++.+|.|+||||||||+++.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~D~~r~~~p~~~~~~t~~~~~~~~~~~~~g~RIDyi~vs~~l~~  250 (275)
T d1hd7a_         171 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP  250 (275)
T ss_dssp             CCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGG
T ss_pred             CCCHHHHCCCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEEEECHHHHH
T ss_conf             72334404510121022222211045665540367653202403776873023233478641899767579996718861


Q ss_pred             HHHCEEEECHHHCCCCCCCCCCEEEEEEC
Q ss_conf             33202871222068676762219999955
Q gi|254780288|r  235 LLHSARIDTKPRGWTKPSDHTPVIVSLDI  263 (281)
Q Consensus       235 ~v~~~~I~~~~~~~~~~SDH~Pv~~~l~l  263 (281)
                      ++.++.|+..    ..+|||+||+++|+|
T Consensus       251 ~v~~~~i~~~----~~~SDH~PV~v~l~l  275 (275)
T d1hd7a_         251 ALCDSKIRSK----ALGSDHCPITLYLAL  275 (275)
T ss_dssp             GEEEEEECTT----CCSSSBCCEEEEECC
T ss_pred             HEEEEEECCC----CCCCCCCCEEEEEEC
T ss_conf             2558998789----999980057999979


No 2  
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=276.47  Aligned_cols=259  Identities=31%  Similarity=0.517  Sum_probs=184.6

Q ss_pred             CEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEEECC
Q ss_conf             07998710318888998999998728988999856579445897787328978999304776514898740313786325
Q gi|254780288|r    4 VTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHL   83 (281)
Q Consensus         4 lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v~~~~   83 (281)
                      |||+||||||+|+|.+++.++|++++||||||||||+.++++..+.+..++|.+.........+........+.......
T Consensus         1 Mki~S~NvnG~r~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (268)
T d1akoa_           1 MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGF   80 (268)
T ss_dssp             CEEEEEECSCGGGCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEETTEEEEEEEESSCCSEEEESS
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHCCCCC
T ss_conf             98999980799984998999998779988999856568111998888656962553144344334321123540001474


Q ss_pred             CCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC
Q ss_conf             556443233010110002320799963104667854-4310123677776553322232014760000110146867420
Q gi|254780288|r   84 PGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPI-TSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHD  162 (281)
Q Consensus        84 ~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~-~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D  162 (281)
                      ......................+.++..+...+... ...+......+.......+........+.++++++|.++.+.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  160 (268)
T d1akoa_          81 PGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD  160 (268)
T ss_dssp             TTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGG
T ss_pred             CCCCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf             00112354321000000136874799831015786310023167788999999999987623886788740113763544


Q ss_pred             CHHHHH------CCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCC-EECCCCCCCCCCCCCCCEEEEEEECHHHHHH
Q ss_conf             000121------048734463455653210331000000133788872-0035787675255777135699947789833
Q gi|254780288|r  163 CYNPII------WENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHL-YSFWDYYADSWSKNKGIRIDHIMLSPEATSL  235 (281)
Q Consensus       163 ~~~~~~------~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~-yT~~~~~~~~~~~n~G~RID~il~s~~l~~~  235 (281)
                      +++...      .....++..++|+++.++.+.|+.|+|+..++.... ++|++++.+++.+|.|+||||||+|+++.++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyI~~s~~l~~~  240 (268)
T d1akoa_         161 IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAEC  240 (268)
T ss_dssp             BCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHTT
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHH
T ss_conf             43223124100024666789899999999970887330101178766654135776665317996177899967289543


Q ss_pred             HHCEEEECHHHCCCCCCCCCCEEEEEE
Q ss_conf             320287122206867676221999995
Q gi|254780288|r  236 LHSARIDTKPRGWTKPSDHTPVIVSLD  262 (281)
Q Consensus       236 v~~~~I~~~~~~~~~~SDH~Pv~~~l~  262 (281)
                      +.++.|+++.++...+|||+||+++|.
T Consensus       241 ~~~~~i~~~~~~~~~~SDH~PV~a~~~  267 (268)
T d1akoa_         241 CVETGIDYEIRSMEKPSDHAPVWATFR  267 (268)
T ss_dssp             EEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred             HEEEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf             149999421028999997225799997


No 3  
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.4e-45  Score=273.06  Aligned_cols=231  Identities=25%  Similarity=0.349  Sum_probs=167.9

Q ss_pred             CCCEEEEEEECCHHH--HHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEE
Q ss_conf             700799871031888--899899999872898899985657944589778732897899930477651489874031378
Q gi|254780288|r    2 SVVTVATWNVNSIRA--RIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEI   79 (281)
Q Consensus         2 ~~lrI~TwNinglr~--r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v   79 (281)
                      ++|||+||||||++.  +...+.++|++++|||||||||+.....+........+|.+.....++++|+||++|+++...
T Consensus         4 ~~~kv~s~Nv~g~~~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~k~~~~~~   83 (236)
T d1vyba_           4 SHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGKQKKAGVAILVSDKTDFK   83 (236)
T ss_dssp             CCEEEEEEECSCCCSHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEECCSSSSCCEEEEECTTCCCE
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCC
T ss_conf             98699999928961245588999999877985999983547623263454225404897510112221146760365212


Q ss_pred             EECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
Q ss_conf             63255564432330101100023207999631046678544310123677776553322232014760000110146867
Q gi|254780288|r   80 VTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQ  159 (281)
Q Consensus        80 ~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~  159 (281)
                      .....   .+.++++..+.+...+..++++|+|+|++..   .      ++..++...+..  ..++|+|+|||||+++.
T Consensus        84 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~---~------~~~~~~~~~~~~--~~~~~~Il~GDfN~~~~  149 (236)
T d1vyba_          84 PTKIK---RDKEGHYIMVKGSIQQEELTILNIYAPNTGA---P------RFIKQVLSDLQR--DLDSHTLIMGDFNTPLS  149 (236)
T ss_dssp             EEEEE---ECTTSSEEEEEEEETTEEEEEEEEECCSSSH---H------HHHHHHHHHTTT--TCCTTEEEEEECSSCSS
T ss_pred             CCCCC---CCCCCCCEEEEEEECCCCCEEEEECCCCCCC---H------HHHHHHHHHHCC--CCCCEEEEEECCCCCCC
T ss_conf             35642---1113431001343136762467741321220---7------888766554113--44320699630255543


Q ss_pred             CCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE
Q ss_conf             42000012104873446345565321033100000013378887200357876752557771356999477898333202
Q gi|254780288|r  160 PHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA  239 (281)
Q Consensus       160 ~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~  239 (281)
                      +.|..+.      .....+++.....+.+.|+.|+||..++.+..||||+...+     .++||||||+|+.+..++..+
T Consensus       150 ~~d~~~~------~~~~~~~~~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~-----~~~RiD~il~s~~~~~~~~~~  218 (236)
T d1vyba_         150 TLDRSTR------QKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHH-----TYSKIDHIVGSKALLSKCKRT  218 (236)
T ss_dssp             GGGBTTC------CCCCHHHHHHHHHHHHTTEEEHHHHHCTTCCCCSEEETTTT-----EEECCEEEEEEGGGGGGEEEE
T ss_pred             HHHHCCC------CCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCC-----CCCEEEEEEECHHHHHHCEEE
T ss_conf             3441354------21103578899999864123321100147864333278899-----776367999871897224089


Q ss_pred             EEECHHHCCCCCCCCCCEEEEEE
Q ss_conf             87122206867676221999995
Q gi|254780288|r  240 RIDTKPRGWTKPSDHTPVIVSLD  262 (281)
Q Consensus       240 ~I~~~~~~~~~~SDH~Pv~~~l~  262 (281)
                      +|+..     .+|||+||+++|.
T Consensus       219 ~i~~~-----~~SDH~pv~~~lk  236 (236)
T d1vyba_         219 EIITN-----YLSDHSAIKLELR  236 (236)
T ss_dssp             EEECC-----SSSSSCEEEEEEC
T ss_pred             EECCC-----CCCCCCCEEEEEC
T ss_conf             98999-----7998101899959


No 4  
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]}
Probab=100.00  E-value=1.2e-39  Score=239.64  Aligned_cols=251  Identities=12%  Similarity=0.144  Sum_probs=167.2

Q ss_pred             CCCEEEEEEECCHHHH--HHHHHHHHHHHCCCE--EEEEEEECCHHHCCH---------HHHHHCCCEEEEEECCCCCCE
Q ss_conf             7007998710318888--998999998728988--999856579445897---------787328978999304776514
Q gi|254780288|r    2 SVVTVATWNVNSIRAR--IHNLAAWIKENNPDI--ICLQETKTEDKNFPF---------ETLQSLNYHIETCGQKSYNGV   68 (281)
Q Consensus         2 ~~lrI~TwNinglr~r--~~~l~~~l~~~~pDI--i~LQEvk~~~~~~~~---------~~~~~~gy~~~~~~~k~~~Gv   68 (281)
                      .+|+|+||||||+|++  ++.+.+++++++|||  |||||++..+..+..         +.+...+|.......++..|+
T Consensus         5 ~~v~I~TwNv~~~~~~~~~~~~l~~i~~~~pDI~vI~lQE~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~   84 (280)
T d2imqx1           5 LSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNTITETMGL   84 (280)
T ss_dssp             EEEEEEEEEEETCCCCSCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTEEEEEEEECSSEEE
T ss_pred             EEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECEEE
T ss_conf             59999988889973872889885624468989899970736856113623489999999872448715898610203179


Q ss_pred             EEEEEECCEE-------EEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             8987403137-------863255564432330101100023207999631046678544310123677776553322232
Q gi|254780288|r   69 AILSKYQPIE-------IVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQR  141 (281)
Q Consensus        69 aIlsk~~~~~-------v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~  141 (281)
                      ++++|.+...       ....+.....  ....+.+++.+.+..+.++|+|+|++......+     .+...+.......
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~i~~~~~~~in~hl~~~~~~~~~~-----~~~~~~~~~~~~~  157 (280)
T d2imqx1          85 TVYCLEKHLDQNTLKNETIIVTVDDQK--KSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNT-----KYAYDTRLDYSKK  157 (280)
T ss_dssp             EEEEEGGGCCTTTCCCEEEEEECSTTS--CSEEEEEEEEETTEEEEEEEEECCTTCCCTTSS-----SSSCCGGGCTTSS
T ss_pred             EEEECCCCCCCCEECCEEEECCCCCCC--CCCEEEEEEEECCEEEEEECCCCCCCCHHHHHH-----HHHHHHHHHHHHH
T ss_conf             999726544554002216750477556--775899999999999996345678660367889-----8877776655541


Q ss_pred             HCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf             01476000011014686742000012104873446345565321033100000013378887200357876752557771
Q gi|254780288|r  142 LELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGI  221 (281)
Q Consensus       142 ~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~  221 (281)
                      .....++|+|||||+.+...|.+......   .....++..++.+...+..++|+.+++.+..||||++..+.+..+.|+
T Consensus       158 ~~~~~~vi~~GD~N~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~~~~~~~~~  234 (280)
T d2imqx1         158 DDPSDFLFWIGDLNVRVETNATHAKSLVD---QNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLS  234 (280)
T ss_dssp             SSCCSEEEEEEECSCCBCSCHHHHHHHHH---TTCHHHHHTTBTHHHHHHTTSSTTCBCCCCCSCCCBCBCTTSSCBCTT
T ss_pred             CCCCCEEEEECCCCCCCCCCCHHHHHHHH---CCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             26777268722454444556277776642---133021689999987532125215536999989743356765567886


Q ss_pred             EE----EEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEECC
Q ss_conf             35----69994778983332028712220686767622199999558
Q gi|254780288|r  222 RI----DHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIP  264 (281)
Q Consensus       222 RI----D~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~lp  264 (281)
                      ||    ||||+++.+...++.+.+..  .....+|||+||+|+|+|.
T Consensus       235 Rip~~iD~Il~~~~~~~~v~~~~y~~--~~~~~~SDH~PV~a~F~l~  279 (280)
T d2imqx1         235 ATPSWTDRALYKSGTGKTIQPLSYNS--LTNYKQTEHRPVLAKFRVT  279 (280)
T ss_dssp             SCCBCCEEEEEECSSSCCEEEEEEEE--CTTCCSSSSCCEEEEEEEE
T ss_pred             CCCCCCCEEEEECCCCCCEEEEEEEE--CCCCCCCCCHHEEEEEEEE
T ss_conf             36765777997886689518989788--8998878883069999997


No 5  
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Probab=100.00  E-value=1.6e-34  Score=210.85  Aligned_cols=223  Identities=14%  Similarity=0.154  Sum_probs=141.1

Q ss_pred             CCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEE--CCCCCCEEEEEEECCEEEE
Q ss_conf             00799871031888899899999872898899985657944589778732897899930--4776514898740313786
Q gi|254780288|r    3 VVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCG--QKSYNGVAILSKYQPIEIV   80 (281)
Q Consensus         3 ~lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~--~k~~~GvaIlsk~~~~~v~   80 (281)
                      -|||+||||++.+++...+..++.+.+||||||||++......   .....++.++...  .++..|++++++.+.....
T Consensus         2 p~rV~~~Nv~~~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (228)
T d1wdua_           2 PYRVLQANLQRKKLATAELAIEAATRKAAIALIQEPYVGGAKS---MKGFRGVRVFQSTAQGDGTVKAAIAVFDHDLDVI   78 (228)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHTCSEEEEESCCC---------CCCSSCEEEECCCCTTCCCCEEEEECCSSCEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CCCCCCEEEEECCCCCCCCCCEEEEEECCCCCEE
T ss_conf             8789942039976789999999973699789998787489885---3113623788345778987625999981464045


Q ss_pred             ECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
Q ss_conf             32555644323301011000232079996310466785443101236777765533222320147600001101468674
Q gi|254780288|r   81 THLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQP  160 (281)
Q Consensus        81 ~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~  160 (281)
                      . .+...   ..+.+.+.+...+..++++|+|+|++.+..        .+++.+...+..  ....++|+|||||+.+..
T Consensus        79 ~-~~~~~---~~~~~~~~i~~~~~~i~v~~~y~~~~~~~~--------~~~~~l~~~~~~--~~~~~vIi~GDfN~~~~~  144 (228)
T d1wdua_          79 Q-YPQLT---TNNIVVVGIRTRAWEITLVSYYFEPDKPIE--------SYLEQIKRVERK--MGPKRLIFGGDANAKSTW  144 (228)
T ss_dssp             E-CTTTC---CSSEEEEEEECSSCEEEEEEEECCTTSCSH--------HHHHHHHHHHHT--TCSSSEEEEEECCCCCGG
T ss_pred             C-CCCCC---CCCEEEEEEECCCCCEEEEEEEECCCCCCH--------HHHHHHHHHHHH--CCCCEEEEECCCCCCCHH
T ss_conf             0-46778---899799999828802899999818743106--------899999999874--589539992253557566


Q ss_pred             CCCHHHHHCCCCCCCCHHHHHHHHH-CCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE
Q ss_conf             2000012104873446345565321-033100000013378887200357876752557771356999477898333202
Q gi|254780288|r  161 HDCYNPIIWENDACFTLEVRQSFQK-LQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA  239 (281)
Q Consensus       161 ~D~~~~~~~~~~~~~~~~er~~~~~-l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~  239 (281)
                      .+   ..      . .......+.. +...++.+.     .....+|||..+.+.+..   .||||+|+|+.+..++.++
T Consensus       145 ~~---~~------~-~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~rID~~~~s~~l~~~v~~~  206 (228)
T d1wdua_         145 WG---SK------E-DDARGDQLMGTLGELGLHIL-----NEGDVPTFDTIRGGKRYQ---SRVDVTFCTEDMLDLIDGW  206 (228)
T ss_dssp             GT---CS------S-CCHHHHHHHHHHHHHTCEEC-----CCSCCCSEEC-----CCE---ECCEEEEECGGGBTTEEEE
T ss_pred             HH---CC------C-CHHHHHHHHHHHHHHCCCCC-----CCCCCCCCCCCCCCCCCC---CCEEEEEECCHHHHHCEEE
T ss_conf             73---24------3-20578999999986075311-----257732200356787888---5448999780586213599


Q ss_pred             EEECHHHCCCCCCCCCCEEEEEECC
Q ss_conf             8712220686767622199999558
Q gi|254780288|r  240 RIDTKPRGWTKPSDHTPVIVSLDIP  264 (281)
Q Consensus       240 ~I~~~~~~~~~~SDH~Pv~~~l~lp  264 (281)
                      .|.....    .|||.||+++|++.
T Consensus       207 ~v~~~~~----~SDH~~v~~~l~~~  227 (228)
T d1wdua_         207 RVDEDLV----SSDHNGMVFNIRLQ  227 (228)
T ss_dssp             EECTTSS----SSSBCCEEEEECCC
T ss_pred             EECCCCC----CCCCHHEEEEEEEE
T ss_conf             9989999----99935769999971


No 6  
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]}
Probab=100.00  E-value=7.4e-33  Score=201.42  Aligned_cols=242  Identities=15%  Similarity=0.157  Sum_probs=130.5

Q ss_pred             CCCCEEEEEEEC----------CHHHHHHHHHHHHHHHCCCEEEEEEEECCHHH-CCHHHHHHCCCEEEEE---------
Q ss_conf             970079987103----------18888998999998728988999856579445-8977873289789993---------
Q gi|254780288|r    1 MSVVTVATWNVN----------SIRARIHNLAAWIKENNPDIICLQETKTEDKN-FPFETLQSLNYHIETC---------   60 (281)
Q Consensus         1 m~~lrI~TwNin----------glr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~-~~~~~~~~~gy~~~~~---------   60 (281)
                      +.-|||+||||.          |.+.|.+.+.+.|...+|||||||||...... .....+.. .|.....         
T Consensus         2 ~~~lki~s~Nv~~~~~~~~~~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~   80 (293)
T d1zwxa1           2 PGNFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLRE-MYPHQTPVIGRSKHGW   80 (293)
T ss_dssp             CCSCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTT-TCCEECCCTTSCSTTC
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH-HCCCEEHHCCCCCCCC
T ss_conf             997789988468576555898278999999999997569988999846774258999987765-4140000011345432


Q ss_pred             -----E----CCCCCCEEEEEEECCEEEEECCCCCC--CC--CCCCEECCCCCCCCCEEEEEEEECCCCCCCCCC--CHH
Q ss_conf             -----0----47765148987403137863255564--43--233010110002320799963104667854431--012
Q gi|254780288|r   61 -----G----QKSYNGVAILSKYQPIEIVTHLPGDD--LD--VQARFIEATFTINTQTLRIGNLYLPHGNPITST--KYD  125 (281)
Q Consensus        61 -----~----~k~~~GvaIlsk~~~~~v~~~~~~~~--~d--~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~--~~~  125 (281)
                           .    ....+|++|+||+|+...........  .+  ....++.+.+...+..+.|+|+|++++.+....  ...
T Consensus        81 ~~~~~~~~~~~~~~~g~~ilsr~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~  160 (293)
T d1zwxa1          81 DKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRA  160 (293)
T ss_dssp             SEEEC-----CCBCCCCEEEESSCEEEEEEEECSCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCCHHHHHH
T ss_conf             21114544320126626999646754421565202454200134148999996399347999844103677530357799


Q ss_pred             HHHHHHHHHHHHHHHH-HCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCC-CC
Q ss_conf             3677776553322232-014760000110146867420000121048734463455653210331000000133788-87
Q gi|254780288|r  126 DKISWIKRFLRFASQR-LELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDT-HH  203 (281)
Q Consensus       126 ~k~~~~~~l~~~l~~~-~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~-~~  203 (281)
                      .|..+++++..++.+. ...+.|+|||||||+.+.+....                ..++   ..++.++....... ..
T Consensus       161 ~r~~~~~~~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~----------------~~~~---~~~~~~~~~~~~~~~~~  221 (293)
T d1zwxa1         161 IRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYH----------------DMLK---LLNVSSPANFNGQMATW  221 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHHHH----------------HHHH---HHTBCCCTTCCTTSCSB
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHH----------------HHHH---HCCCCCHHHCCCCCCCC
T ss_conf             9999898865455540368898489980669898855788----------------8875---33655532304677644


Q ss_pred             CEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE-EE----------ECHHH--CCCCCCCCCCEEEEEE
Q ss_conf             200357876752557771356999477898333202-87----------12220--6867676221999995
Q gi|254780288|r  204 LYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA-RI----------DTKPR--GWTKPSDHTPVIVSLD  262 (281)
Q Consensus       204 ~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~-~I----------~~~~~--~~~~~SDH~Pv~~~l~  262 (281)
                      ..++..+....+..+.+.||||||+|+......... .+          .....  ....+|||+||+|+++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~A~~~  293 (293)
T d1zwxa1         222 DPTTNSMLKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVGFTD  293 (293)
T ss_dssp             CTTTCHHHHHHCTTSCCBCCEEEEEBTTSCCCSCEEEEECCCCCCCEEEEETTEEEEECCSSSSCCEEEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             553244445455789886078999846303643222047752166301134335688899488178499959


No 7  
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]}
Probab=99.98  E-value=1.9e-33  Score=204.78  Aligned_cols=244  Identities=17%  Similarity=0.176  Sum_probs=130.1

Q ss_pred             CCCEEEEEEECC----------HHHHHHHHHHHHHHHCCCEEEEEEEECCHH--HCCHHHHHHCCCEEEEEE--------
Q ss_conf             700799871031----------888899899999872898899985657944--589778732897899930--------
Q gi|254780288|r    2 SVVTVATWNVNS----------IRARIHNLAAWIKENNPDIICLQETKTEDK--NFPFETLQSLNYHIETCG--------   61 (281)
Q Consensus         2 ~~lrI~TwNing----------lr~r~~~l~~~l~~~~pDIi~LQEvk~~~~--~~~~~~~~~~gy~~~~~~--------   61 (281)
                      .++||+||||.+          .+.|.+.+.+.|..++|||||||||.....  .+.......++|.....+        
T Consensus         2 ~tl~v~s~Nv~~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   81 (299)
T d2ddra1           2 DTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEWD   81 (299)
T ss_dssp             CEEEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTSCCSTTSS
T ss_pred             CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf             96699987788465466887278899999999987569988999926776527888888887567403321345555554


Q ss_pred             ---------CCCCCCEEEEEEECCEEEEECCCCCC--CCC--CCCEECCCCCCCCCEEEEEEEECCCCCCCCCCC--HHH
Q ss_conf             ---------47765148987403137863255564--432--330101100023207999631046678544310--123
Q gi|254780288|r   62 ---------QKSYNGVAILSKYQPIEIVTHLPGDD--LDV--QARFIEATFTINTQTLRIGNLYLPHGNPITSTK--YDD  126 (281)
Q Consensus        62 ---------~k~~~GvaIlsk~~~~~v~~~~~~~~--~d~--~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~--~~~  126 (281)
                               ....+|++++||+|+...........  .+.  ...++...+...+..|.|+|+|++++.+.....  ...
T Consensus        82 ~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~~  161 (299)
T d2ddra1          82 KTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASV  161 (299)
T ss_dssp             EEEESCCTTCSSCCCCEEEESSCEEEEEEEECSCCC----CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHH
T ss_pred             EEEECCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf             02301234310264169999861113134553113575543420699999806980899997246678775310246889


Q ss_pred             HHHHHHHHHHHHHH-HHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCC-----CCHHHHCCCCCC
Q ss_conf             67777655332223-201476000011014686742000012104873446345565321033-----100000013378
Q gi|254780288|r  127 KISWIKRFLRFASQ-RLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQN-----MGFTDAIRATHD  200 (281)
Q Consensus       127 k~~~~~~l~~~l~~-~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~-----~gl~D~~r~~~~  200 (281)
                      |..++..+...+.. ....+.|+|+|||||+.+.+.+......          -+..++.+..     .+...+++   +
T Consensus       162 r~~q~~~~~~~~~~~~~~~~~~vi~~GDfN~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~t~~---~  228 (299)
T d2ddra1         162 RTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSE----------YASMFKTLNASVPSYTGHTATWD---A  228 (299)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCTTSH----------HHHHHHHHTBCCCEEEECSCSBC---T
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCHHH----------HHHHHHHHCCCCCCCCCCCCCCC---C
T ss_conf             9999998765655420256651799723788865144401045----------66666432001222257765434---3


Q ss_pred             CCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHC-----------EEEECH--HHCCCCCCCCCCEEEEEEC
Q ss_conf             88720035787675255777135699947789833320-----------287122--2068676762219999955
Q gi|254780288|r  201 THHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHS-----------ARIDTK--PRGWTKPSDHTPVIVSLDI  263 (281)
Q Consensus       201 ~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~-----------~~I~~~--~~~~~~~SDH~Pv~~~l~l  263 (281)
                      ....++.     ..+..+.+.||||||+|+.+......           +.....  ......+|||+||+++|+|
T Consensus       229 ~~~~~~~-----~~~~~~~~~riDyI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~a~l~L  299 (299)
T d2ddra1         229 TTNSIAK-----YNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATISM  299 (299)
T ss_dssp             TTCHHHH-----HHCTTSCCBCCEEEEEBTTSCCCSEEEEEECCCCCCCEEEEETTEEEEECCSCSSCCEEEEEEC
T ss_pred             CCCCCCC-----CCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf             3344445-----4568899842568995551048632424785024332200122257788995862228999989


No 8  
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]}
Probab=99.98  E-value=3.8e-33  Score=203.07  Aligned_cols=217  Identities=16%  Similarity=0.094  Sum_probs=123.4

Q ss_pred             CCCCEEEEEEECCHHHHHH-----HHH-HHHHHHCCCEEEEEEEECCHHH--CCHHHHHHCCCEE---------------
Q ss_conf             9700799871031888899-----899-9998728988999856579445--8977873289789---------------
Q gi|254780288|r    1 MSVVTVATWNVNSIRARIH-----NLA-AWIKENNPDIICLQETKTEDKN--FPFETLQSLNYHI---------------   57 (281)
Q Consensus         1 m~~lrI~TwNinglr~r~~-----~l~-~~l~~~~pDIi~LQEvk~~~~~--~~~~~~~~~gy~~---------------   57 (281)
                      ++.+||+||||+|.+...+     .+. .++...+|||||||||+.....  +....+...++.+               
T Consensus         2 ~~~~rv~TwNi~~~~~~~~~~~~~~~~~~~~~~~~~DVl~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (250)
T d2f1na1           2 LTDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQQ   81 (250)
T ss_dssp             GGGCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSSSCE
T ss_pred             CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCE
T ss_conf             87889999947977576556555999999986689899999826863343366765443027642002321344567632


Q ss_pred             --EEE----ECCCCCCEEEEEEECCEEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf             --993----04776514898740313786325556443233010110002320799963104667854431012367777
Q gi|254780288|r   58 --ETC----GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWI  131 (281)
Q Consensus        58 --~~~----~~k~~~GvaIlsk~~~~~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~  131 (281)
                        .+.    ...+..|++++||+++..+....+...  ...+++.++    .+.++|+|+|+|++...+..+   +.++.
T Consensus        82 ~~~~~~~~~~~~~~~g~~i~s~~~~~~~~~~~~~~~--~~r~~~~~~----~~~~~v~n~Hl~~~~~~~~~~---~~~~~  152 (250)
T d2f1na1          82 VYIYFSAVDALGGRVNLALVSNRRADEVFVLSPVRQ--GGRPLLGIR----IGNDAFFTAHAIAMRNNDAPA---LVEEV  152 (250)
T ss_dssp             EEEEEECSCSSSCSSCEEEEESSCCSEEEEECCSST--TCCCEEEEE----ETTEEEEEEECCSSSSCSHHH---HHHHH
T ss_pred             EEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCCC--CCCCEEEEE----ECEEEEEEEECCCCCCHHHHH---HHHHH
T ss_conf             678751145446571459998875305675178754--221103676----320899999818999565999---99999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCC
Q ss_conf             65533222320147600001101468674200001210487344634556532103310000001337888720035787
Q gi|254780288|r  132 KRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYY  211 (281)
Q Consensus       132 ~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~  211 (281)
                      +.+.+.+.....+..|+|+|||||+.|.+..                      .....++.|.++..++..  +||.   
T Consensus       153 ~~~~~~~~~~~~~~~~~iv~GDfN~~p~~~~----------------------~~~~~~~~~~~~~~~~~~--~t~~---  205 (250)
T d2f1na1         153 YNFFRDSRDPVHQALNWMILGDFNREPADLE----------------------MNLTVPVRRASEIISPAA--ATQT---  205 (250)
T ss_dssp             HHHHHTCSSHHHHTCEEEEEEECSSCHHHHH----------------------TTSCHHHHHTEEEECCSS--CSBT---
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCCCCHHH----------------------HHHHCCCCCEEEECCCCC--CCCC---
T ss_conf             9999998764146886687345576871255----------------------554201122123218798--8657---


Q ss_pred             CCCCCCCCCCEEEEEEECHHHHHHHHCEE--EECHHHCCCCCCCCCCEEEE
Q ss_conf             67525577713569994778983332028--71222068676762219999
Q gi|254780288|r  212 ADSWSKNKGIRIDHIMLSPEATSLLHSAR--IDTKPRGWTKPSDHTPVIVS  260 (281)
Q Consensus       212 ~~~~~~n~G~RID~il~s~~l~~~v~~~~--I~~~~~~~~~~SDH~Pv~~~  260 (281)
                             .|+||||||+|+++..+.....  +.........+|||+||.+.
T Consensus       206 -------~~~riD~i~~s~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~  249 (250)
T d2f1na1         206 -------SQRTLDYAVAGNSVAFRPSPLQAGIVYGARRTQISSDHFPVGVS  249 (250)
T ss_dssp             -------TSCCCEEEEEEESSCCCCCCCEEEETTTTSCCCCSCSBCCEEEE
T ss_pred             -------CCCCEEEEEEECHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf             -------99957999982668626413678875143589971884255876


No 9  
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]}
Probab=99.96  E-value=5.7e-30  Score=185.20  Aligned_cols=223  Identities=18%  Similarity=0.096  Sum_probs=124.0

Q ss_pred             CCCCEEEEEEECCHHH------HHHHHHHHHHHHCCCEEEEEEEECCHHHC--CHHHHHHCCC--EEEE-----------
Q ss_conf             9700799871031888------89989999987289889998565794458--9778732897--8999-----------
Q gi|254780288|r    1 MSVVTVATWNVNSIRA------RIHNLAAWIKENNPDIICLQETKTEDKNF--PFETLQSLNY--HIET-----------   59 (281)
Q Consensus         1 m~~lrI~TwNinglr~------r~~~l~~~l~~~~pDIi~LQEvk~~~~~~--~~~~~~~~gy--~~~~-----------   59 (281)
                      |+.+||+||||+|++.      +......+++..+|||||||||.......  ........++  ..+.           
T Consensus         2 ~~~~rv~TwNi~~~~~~~~~~~~~~~~~~~~~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (261)
T d1sr4b_           2 LSDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNM   81 (261)
T ss_dssp             GGGSCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSSCCE
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCE
T ss_conf             87888999967968787555544899999985579998999856754563267998876507651144311466667753


Q ss_pred             ----E----ECCCCCCEEEEEEECCEEEEECCCCCCCCCCCCE-ECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf             ----3----0477651489874031378632555644323301-011000232079996310466785443101236777
Q gi|254780288|r   60 ----C----GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARF-IEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISW  130 (281)
Q Consensus        60 ----~----~~k~~~GvaIlsk~~~~~v~~~~~~~~~d~~~R~-i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~  130 (281)
                          .    ..+.++|+||+||.|+..+....+... ....|. +.+.+    ....++++|+.+........  .....
T Consensus        82 ~~~~~~~~~~~~~~~g~~~ls~~~~~~~~~~~~~~~-~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~  154 (261)
T d1sr4b_          82 VYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSS-VLQSRPAVGIRI----GTDVFFTVHALATGGSDAVS--LIRNI  154 (261)
T ss_dssp             EEEEEECCCTTTSCSCEEEEESSCCSEEEEECCCCC-SSCCCCEEEEEE----TTEEEEEEECCTTTTTTHHH--HHHHH
T ss_pred             EEEEEECCCCCCCEEEEEEEECCCCCCCEECCCCCC-CCCCCEEEEEEE----ECCCCEEEEEEECCCCCCHH--HHHHH
T ss_conf             689950443345301259996887501045368876-666522799998----41551479996147751279--99999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCC
Q ss_conf             76553322232014760000110146867420000121048734463455653210331000000133788872003578
Q gi|254780288|r  131 IKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDY  210 (281)
Q Consensus       131 ~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~  210 (281)
                      ...+..........+.|+|+|||||..+.+                    ..+..+.+.++.|+++..++..  +||++ 
T Consensus       155 ~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~--~t~~~-  211 (261)
T d1sr4b_         155 FTTFNSSSSPPERRVYSWMVVGDFNRAPAN--------------------LEVALRQEPAVSENTIIIAPTE--PTHRS-  211 (261)
T ss_dssp             HHHHHC---CGGGGGCEEEEEEECSSCHHH--------------------HHHHHTTSHHHHHTCEEECCSS--CSBTT-
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCC--------------------HHHHHHHHHCCCCCEECCCCCC--CCCCC-
T ss_conf             999999999863569977996332767640--------------------8888766410222100158998--96898-


Q ss_pred             CCCCCCCCCCCEEEEEEECHHHHHHHH------CEEEECHHHCCCCCCCCCCEEEEEE
Q ss_conf             767525577713569994778983332------0287122206867676221999995
Q gi|254780288|r  211 YADSWSKNKGIRIDHIMLSPEATSLLH------SARIDTKPRGWTKPSDHTPVIVSLD  262 (281)
Q Consensus       211 ~~~~~~~n~G~RID~il~s~~l~~~v~------~~~I~~~~~~~~~~SDH~Pv~~~l~  262 (281)
                               |.||||||+++.....+.      .+.+.........+|||+||...++
T Consensus       212 ---------~~~iD~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~f~~~  260 (261)
T d1sr4b_         212 ---------GNILDYAILHDAHLPRREQARERIGASLMLNQLRSQITSDHFPVSFVRD  260 (261)
T ss_dssp             ---------SCCCEEEEEECTTSCTTCGGGCCEEEEECGGGCSSCCSSSBCCEEEEEC
T ss_pred             ---------CCEECEEEECCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEC
T ss_conf             ---------9803669966800032540441102355202357996177841089868


No 10 
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.96  E-value=1.4e-28  Score=177.42  Aligned_cols=225  Identities=15%  Similarity=0.066  Sum_probs=115.4

Q ss_pred             CEEEEEEECCH--H-HHHHHHHHHHHH--HCCCEEEEEEEECCHHHCCHHHHHH----C--CCEEEEEECC----CCCCE
Q ss_conf             07998710318--8-889989999987--2898899985657944589778732----8--9789993047----76514
Q gi|254780288|r    4 VTVATWNVNSI--R-ARIHNLAAWIKE--NNPDIICLQETKTEDKNFPFETLQS----L--NYHIETCGQK----SYNGV   68 (281)
Q Consensus         4 lrI~TwNingl--r-~r~~~l~~~l~~--~~pDIi~LQEvk~~~~~~~~~~~~~----~--gy~~~~~~~k----~~~Gv   68 (281)
                      |||+||||+++  . .+.+...++|.+  ++|||||||||+..........+..    .  .+.+......    ...+.
T Consensus         1 lrI~s~Ni~~~~~~~~~~~~~~~~l~~~i~~~DIi~LQEv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (260)
T d2a40b1           1 LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERY   80 (260)
T ss_dssp             CEEEEEEEEEESHHHHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCBCSSSCCBEE
T ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCE
T ss_conf             98999968834778666599999999874799989999623477416999998643114675036741567777543100


Q ss_pred             EEEEEECCEEEEECCCCCCCC--C----CCC---E-ECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             898740313786325556443--2----330---1-01100023207999631046678544310123677776553322
Q gi|254780288|r   69 AILSKYQPIEIVTHLPGDDLD--V----QAR---F-IEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFA  138 (281)
Q Consensus        69 aIlsk~~~~~v~~~~~~~~~d--~----~~R---~-i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l  138 (281)
                      +++.+.....+..........  .    ..+   . ....+......+.+++.|....      ....+..+...+.+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  154 (260)
T d2a40b1          81 LFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPS------DAVAEINSLYDVYLDV  154 (260)
T ss_dssp             EEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGG------GHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCEECCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCC------HHHHHHHHHHHHHHHH
T ss_conf             2541254420111200013555676543332310212110345624799986415543------0368888899999999


Q ss_pred             HHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf             23201476000011014686742000012104873446345565321033100000013378887200357876752557
Q gi|254780288|r  139 SQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKN  218 (281)
Q Consensus       139 ~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n  218 (281)
                      ... ..+.|+|+|||||..+....                    ++.+...++.+.+.........+||+..       +
T Consensus       155 ~~~-~~~~~~iv~GDfN~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  206 (260)
T d2a40b1         155 QQK-WHLNDVMLMGDFNADCSYVT--------------------SSQWSSIRLRTSSTFQWLIPDSADTTAT-------S  206 (260)
T ss_dssp             HHH-HCCCCEEEEEECCCSTTTSC--------------------GGGGGGCHHHHSTTEEESSCTTCCCBSS-------S
T ss_pred             HHH-CCCCCEEECCCCCCCCCCHH--------------------HHHHHHHCCCCCCCCCCCCCCCCCCCCC-------C
T ss_conf             863-45788797665567865234--------------------5555441432221111267888763347-------9


Q ss_pred             CCCEEEEEEECHHHHHHHHC---EEEECHHH-------CCCCCCCCCCEEEEEE
Q ss_conf             77135699947789833320---28712220-------6867676221999995
Q gi|254780288|r  219 KGIRIDHIMLSPEATSLLHS---ARIDTKPR-------GWTKPSDHTPVIVSLD  262 (281)
Q Consensus       219 ~G~RID~il~s~~l~~~v~~---~~I~~~~~-------~~~~~SDH~Pv~~~l~  262 (281)
                      .++||||||+|+.+......   ..+.....       ....+|||+||+++|.
T Consensus       207 ~~~~iD~i~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SDH~PV~v~ls  260 (260)
T d2a40b1         207 TNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT  260 (260)
T ss_dssp             CCCCCEEEEEESHHHHHHBCTTCCEECCHHHHTTCCHHHHHHHCSBCCEEEEBC
T ss_pred             CCCCEEEEEECCHHHCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             998556899684461542632501442023212556335798077426799959


No 11 
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.96  E-value=2.4e-29  Score=181.67  Aligned_cols=252  Identities=17%  Similarity=0.118  Sum_probs=144.1

Q ss_pred             CEEEEEEECCHHHHHHHHHHHHH---HHCCCE--EEEEEEE-CCHHHC--------------CHHHH-----HHCCCEEE
Q ss_conf             07998710318888998999998---728988--9998565-794458--------------97787-----32897899
Q gi|254780288|r    4 VTVATWNVNSIRARIHNLAAWIK---ENNPDI--ICLQETK-TEDKNF--------------PFETL-----QSLNYHIE   58 (281)
Q Consensus         4 lrI~TwNinglr~r~~~l~~~l~---~~~pDI--i~LQEvk-~~~~~~--------------~~~~~-----~~~gy~~~   58 (281)
                      +.|+||||||.+.+ +.+.+||.   ...|||  |||||+. .....+              ....+     ...+|...
T Consensus        27 I~v~TWNv~~~~~~-~~l~~~l~~~~~~~~DI~viglQEi~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~Y~~v  105 (345)
T d1i9za_          27 IFVASYNLNGCSAT-TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQL  105 (345)
T ss_dssp             EEEEEEECTTCCCC-SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHTCCSSCCEEEE
T ss_pred             EEEEEECCCCCCCC-CCHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             99999867996388-05687646678899999999762477363223103674246789999987535011679984899


Q ss_pred             EEECCCCCCEEEEEEECCEE----E-----EECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf             93047765148987403137----8-----63255564432330101100023207999631046678544310123677
Q gi|254780288|r   59 TCGQKSYNGVAILSKYQPIE----I-----VTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKIS  129 (281)
Q Consensus        59 ~~~~k~~~GvaIlsk~~~~~----v-----~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~  129 (281)
                      ...+.+..+++|++|.++..    +     .+++.+ ..+.. ..+.+.+.+.+..+.|+|+|+|+|......|......
T Consensus       106 ~~~~~~g~~l~vf~r~~~~~~i~~v~~~~~~~g~~g-~~gnK-GaV~vr~~i~~t~l~fvn~HL~ag~~~~~~R~~~~~~  183 (345)
T d1i9za_         106 RSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGG-VSGNK-GAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRT  183 (345)
T ss_dssp             EEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC-----CC-EEEEEEEEETTEEEEEEEEECCCCSSCHHHHHHHHHH
T ss_pred             EEECCCCCEEEEEECCHHCCCCCCCEEEEEECCCCC-CCCCC-CEEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             973106708999982511155653126789657688-53688-6499999998999999970466766306778878999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCE---E
Q ss_conf             7765533222320147600001101468674200001210487344634556532103310000001337888720---0
Q gi|254780288|r  130 WIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLY---S  206 (281)
Q Consensus       130 ~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~y---T  206 (281)
                      +++.+.............+++|||||......|....+...... + ....+..+-..+....++|+.+...+-.|   .
T Consensus       184 i~~~l~~~~~~~~~~~d~v~~~GDlN~R~~~~~~~~~~~i~~~~-~-~~l~~~dql~~~~~~~~~~~~~~E~~I~F~PTy  261 (345)
T d1i9za_         184 IASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGK-L-SYLFEYDQLNKQMLTGKVFPFFSELPITFPPTY  261 (345)
T ss_dssp             HHHHCCCGGGCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTC-H-HHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCB
T ss_pred             HHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCC-H-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             99861135565545675269962323134675166676542242-6-678899998765543471447403887899998


Q ss_pred             CCCCCCCCCCCCCCCEE----EEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEECCCCC
Q ss_conf             35787675255777135----69994778983332028712220686767622199999558877
Q gi|254780288|r  207 FWDYYADSWSKNKGIRI----DHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIPEPR  267 (281)
Q Consensus       207 ~~~~~~~~~~~n~G~RI----D~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~lp~~~  267 (281)
                      +|++....++.+.|+||    |+||.+..+.  +..  +..   .....|||.||.+.|++.-+.
T Consensus       262 k~~~~~~~yd~~~k~RiPsWcDRIL~~~~~~--~~~--Y~s---~~~~~SDH~PV~a~f~v~v~~  319 (345)
T d1i9za_         262 KFDIGTDIYDTSDKHRVPAWTDRILYRGELV--PHS--YQS---VPLYYSDHRPIYATYEANIVK  319 (345)
T ss_dssp             CBCTTSSCBCCSTTCCCCBCCEEEEEESSCE--EEE--EEE---CCCCSSSBCCEEEEEEEEEEE
T ss_pred             EEECCCCCCCCCCCEECCCCCCEEEEECCEE--EEE--EEC---CCCCCCCCCCEEEEEEEEEEE
T ss_conf             0778987667778814724336598637625--646--603---687788844689999999888


No 12 
>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=42.47  E-value=0.43  Score=22.92  Aligned_cols=21  Identities=5%  Similarity=0.200  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHCCCEEEEEE
Q ss_conf             899899999872898899985
Q gi|254780288|r   17 RIHNLAAWIKENNPDIICLQE   37 (281)
Q Consensus        17 r~~~l~~~l~~~~pDIi~LQE   37 (281)
                      -.+++++|+++...+++-+-=
T Consensus        48 ~a~~fvd~l~~~G~~~wQiLP   68 (523)
T d1x1na1          48 QAFKFLDWLHLAGCSLWQVLP   68 (523)
T ss_dssp             HHHHHHHHHHHHTCCEEECCC
T ss_pred             HHHHHHHHHHHCCCCEEEEEC
T ss_conf             999999999986999899818


No 13 
>d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]}
Probab=37.84  E-value=3.6  Score=17.71  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHCC
Q ss_conf             655332223201476000011014
Q gi|254780288|r  132 KRFLRFASQRLELEEPLIFAGDYN  155 (281)
Q Consensus       132 ~~l~~~l~~~~~~~~~vIi~GDFN  155 (281)
                      +.+.+.+.+....+..++++|||=
T Consensus        31 ~~ii~~wn~~V~~~D~v~~LGD~~   54 (188)
T d1xm7a_          31 IVILTNLLKVLKPEDTLYHLGDFT   54 (188)
T ss_dssp             HHHHHHHHTTCCTTCEEEECSCCB
T ss_pred             HHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             999999996268898899948841


No 14 
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.42  E-value=16  Score=14.05  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=22.1

Q ss_pred             CCEEEEEEEC----CHHHHHHHHHHHHHH---H--CCCEEEEEEE
Q ss_conf             0079987103----188889989999987---2--8988999856
Q gi|254780288|r    3 VVTVATWNVN----SIRARIHNLAAWIKE---N--NPDIICLQET   38 (281)
Q Consensus         3 ~lrI~TwNin----glr~r~~~l~~~l~~---~--~pDIi~LQEv   38 (281)
                      .|||+.-.++    -+.+.++++.+++++   +  ++|+|++.|.
T Consensus         9 ~~kia~~Q~~~~~~D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE~   53 (281)
T d1f89a_           9 KIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPEC   53 (281)
T ss_dssp             CEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTT
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             733999957788889999999999999999834899979986886


No 15 
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=25.55  E-value=15  Score=14.18  Aligned_cols=25  Identities=12%  Similarity=-0.061  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHCC
Q ss_conf             7655332223201476000011014
Q gi|254780288|r  131 IKRFLRFASQRLELEEPLIFAGDYN  155 (281)
Q Consensus       131 ~~~l~~~l~~~~~~~~~vIi~GDFN  155 (281)
                      +.++.+.+.+....+.+++++|-.=
T Consensus        71 ~~~~~~~l~~~~~~~i~iivGG~~~   95 (137)
T d1ccwa_          71 CKGLRQKCDEAGLEGILLYVGGNIV   95 (137)
T ss_dssp             HTTHHHHHHHTTCTTCEEEEEESCS
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             9999999987314898799947867


Done!