Query gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 281 No_of_seqs 149 out of 3224 Neff 7.9 Searched_HMMs 13730 Date Wed Jun 1 03:50:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780288.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1hd7a_ d.151.1.1 (A:) DNA rep 100.0 0 0 292.5 15.8 252 2-263 17-275 (275) 2 d1akoa_ d.151.1.1 (A:) DNA-rep 100.0 0 0 276.5 19.1 259 4-262 1-267 (268) 3 d1vyba_ d.151.1.1 (A:) Endonuc 100.0 1.4E-45 0 273.1 14.4 231 2-262 4-236 (236) 4 d2imqx1 d.151.1.2 (X:3-282) Sa 100.0 1.2E-39 8.5E-44 239.6 10.0 251 2-264 5-279 (280) 5 d1wdua_ d.151.1.1 (A:) Endonuc 100.0 1.6E-34 1.1E-38 210.8 14.1 223 3-264 2-227 (228) 6 d1zwxa1 d.151.1.3 (A:41-333) S 100.0 7.4E-33 5.4E-37 201.4 12.6 242 1-262 2-293 (293) 7 d2ddra1 d.151.1.3 (A:7-305) Sp 100.0 1.9E-33 1.4E-37 204.8 8.4 244 2-263 2-299 (299) 8 d2f1na1 d.151.1.1 (A:1-250) Cy 100.0 3.8E-33 2.7E-37 203.1 7.8 217 1-260 2-249 (250) 9 d1sr4b_ d.151.1.1 (B:) Cytolet 100.0 5.7E-30 4.1E-34 185.2 11.2 223 1-262 2-260 (261) 10 d2a40b1 d.151.1.1 (B:1-260) De 100.0 1.4E-28 1E-32 177.4 14.4 225 4-262 1-260 (260) 11 d1i9za_ d.151.1.2 (A:) Synapto 100.0 2.4E-29 1.8E-33 181.7 8.4 252 4-267 27-319 (345) 12 d1x1na1 c.1.8.1 (A:2-524) Amyl 42.5 0.43 3.1E-05 22.9 -3.9 21 17-37 48-68 (523) 13 d1xm7a_ d.159.1.8 (A:) Hypothe 37.8 3.6 0.00026 17.7 0.3 24 132-155 31-54 (188) 14 d1f89a_ d.160.1.1 (A:) hypothe 26.4 16 0.0012 14.0 3.2 36 3-38 9-53 (281) 15 d1ccwa_ c.23.6.1 (A:) Glutamat 25.5 15 0.0011 14.2 1.8 25 131-155 71-95 (137) No 1 >d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Probab=100.00 E-value=0 Score=292.50 Aligned_cols=252 Identities=29% Similarity=0.480 Sum_probs=176.4 Q ss_pred CCCEEEEEEECCHHHHHH-HHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEE----EECCCCCCEEEEEEECC Q ss_conf 700799871031888899-8999998728988999856579445897787328978999----30477651489874031 Q gi|254780288|r 2 SVVTVATWNVNSIRARIH-NLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIET----CGQKSYNGVAILSKYQP 76 (281) Q Consensus 2 ~~lrI~TwNinglr~r~~-~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~----~~~k~~~GvaIlsk~~~ 76 (281) ++|||+||||||+|++.+ .+.+||++++||||||||||+.++++..+.....+|.+.. .+.++..|++++++..+ T Consensus 17 ~~mki~S~NvnGlr~~~~~~~~~~i~~~~pDIi~LQE~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (275) T d1hd7a_ 17 ATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCP 96 (275) T ss_dssp CCEEEEEEECSSHHHHHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC-----CCCEEEEESSCC T ss_pred CCEEEEEEEECCHHHHHHCCHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCCC T ss_conf 76799999825687613435899997589989998822058233888787165764356643202333344201215686 Q ss_pred EEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC Q ss_conf 37863255564432330101100023207999631046678544310123677776553322232014760000110146 Q gi|254780288|r 77 IEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNI 156 (281) Q Consensus 77 ~~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~ 156 (281) ..+.........+.++.+..... ....+....++.+. . ...++.+.. ....+..........+.+++++||||+ T Consensus 97 ~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gd~n~ 170 (275) T d1hd7a_ 97 LKVSYGIGDEEHDQEGRVIVAEF--DSFVLVTAYVPNAG--R-GLVRLEYRQ-RWDEAFRKFLKGLASRKPLVLCGDLNV 170 (275) T ss_dssp SEEEESCSCGGGSSSSCEEEEEC--SSCEEEEEECCCCC--G-GGTTHHHHH-HHHHHHHHHHHHHHHHSCEEEEEECSC T ss_pred EEEEECCCCCCCHHHHHEEEEEE--CCEEEEEEEEEECC--C-CCCCHHHHH-HHCCCCCCCCCCCCCCCCEEEECCCCC T ss_conf 03664233453022321124553--13043102454046--6-541013333-310020000100124775376112245 Q ss_pred CCCCCCCHHHHHCCCCCCCCHHHHHHHHHC-CCCCHHHHCCCCCC-CCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHH Q ss_conf 867420000121048734463455653210-33100000013378-8872003578767525577713569994778983 Q gi|254780288|r 157 IPQPHDCYNPIIWENDACFTLEVRQSFQKL-QNMGFTDAIRATHD-THHLYSFWDYYADSWSKNKGIRIDHIMLSPEATS 234 (281) Q Consensus 157 a~~~~D~~~~~~~~~~~~~~~~er~~~~~l-~~~gl~D~~r~~~~-~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~ 234 (281) ++.+.+..+........+....|...|..+ .+.||.|+||..+| .+..||||+++.+++.+|.|+||||||||+++.+ T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~D~~r~~~p~~~~~~t~~~~~~~~~~~~~g~RIDyi~vs~~l~~ 250 (275) T d1hd7a_ 171 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP 250 (275) T ss_dssp CCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGG T ss_pred CCCHHHHCCCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEEEECHHHHH T ss_conf 72334404510121022222211045665540367653202403776873023233478641899767579996718861 Q ss_pred HHHCEEEECHHHCCCCCCCCCCEEEEEEC Q ss_conf 33202871222068676762219999955 Q gi|254780288|r 235 LLHSARIDTKPRGWTKPSDHTPVIVSLDI 263 (281) Q Consensus 235 ~v~~~~I~~~~~~~~~~SDH~Pv~~~l~l 263 (281) ++.++.|+.. ..+|||+||+++|+| T Consensus 251 ~v~~~~i~~~----~~~SDH~PV~v~l~l 275 (275) T d1hd7a_ 251 ALCDSKIRSK----ALGSDHCPITLYLAL 275 (275) T ss_dssp GEEEEEECTT----CCSSSBCCEEEEECC T ss_pred HEEEEEECCC----CCCCCCCCEEEEEEC T ss_conf 2558998789----999980057999979 No 2 >d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=276.47 Aligned_cols=259 Identities=31% Similarity=0.517 Sum_probs=184.6 Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEEECC Q ss_conf 07998710318888998999998728988999856579445897787328978999304776514898740313786325 Q gi|254780288|r 4 VTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHL 83 (281) Q Consensus 4 lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v~~~~ 83 (281) |||+||||||+|+|.+++.++|++++||||||||||+.++++..+.+..++|.+.........+........+....... T Consensus 1 Mki~S~NvnG~r~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268) T d1akoa_ 1 MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGF 80 (268) T ss_dssp CEEEEEECSCGGGCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEETTEEEEEEEESSCCSEEEESS T ss_pred CEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHCCCCC T ss_conf 98999980799984998999998779988999856568111998888656962553144344334321123540001474 Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC Q ss_conf 556443233010110002320799963104667854-4310123677776553322232014760000110146867420 Q gi|254780288|r 84 PGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPI-TSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHD 162 (281) Q Consensus 84 ~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~-~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D 162 (281) ......................+.++..+...+... ...+......+.......+........+.++++++|.++.+.| T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 160 (268) T d1akoa_ 81 PGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD 160 (268) T ss_dssp TTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGG T ss_pred CCCCCCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH T ss_conf 00112354321000000136874799831015786310023167788999999999987623886788740113763544 Q ss_pred CHHHHH------CCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCC-EECCCCCCCCCCCCCCCEEEEEEECHHHHHH Q ss_conf 000121------048734463455653210331000000133788872-0035787675255777135699947789833 Q gi|254780288|r 163 CYNPII------WENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHL-YSFWDYYADSWSKNKGIRIDHIMLSPEATSL 235 (281) Q Consensus 163 ~~~~~~------~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~-yT~~~~~~~~~~~n~G~RID~il~s~~l~~~ 235 (281) +++... .....++..++|+++.++.+.|+.|+|+..++.... ++|++++.+++.+|.|+||||||+|+++.++ T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyI~~s~~l~~~ 240 (268) T d1akoa_ 161 IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAEC 240 (268) T ss_dssp BCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHTT T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHH T ss_conf 43223124100024666789899999999970887330101178766654135776665317996177899967289543 Q ss_pred HHCEEEECHHHCCCCCCCCCCEEEEEE Q ss_conf 320287122206867676221999995 Q gi|254780288|r 236 LHSARIDTKPRGWTKPSDHTPVIVSLD 262 (281) Q Consensus 236 v~~~~I~~~~~~~~~~SDH~Pv~~~l~ 262 (281) +.++.|+++.++...+|||+||+++|. T Consensus 241 ~~~~~i~~~~~~~~~~SDH~PV~a~~~ 267 (268) T d1akoa_ 241 CVETGIDYEIRSMEKPSDHAPVWATFR 267 (268) T ss_dssp EEEEEECHHHHTSSSCCSBCCEEEEEC T ss_pred HEEEEEECCCCCCCCCCCCCCEEEEEE T ss_conf 149999421028999997225799997 No 3 >d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Probab=100.00 E-value=1.4e-45 Score=273.06 Aligned_cols=231 Identities=25% Similarity=0.349 Sum_probs=167.9 Q ss_pred CCCEEEEEEECCHHH--HHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEE Q ss_conf 700799871031888--899899999872898899985657944589778732897899930477651489874031378 Q gi|254780288|r 2 SVVTVATWNVNSIRA--RIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEI 79 (281) Q Consensus 2 ~~lrI~TwNinglr~--r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v 79 (281) ++|||+||||||++. +...+.++|++++|||||||||+.....+........+|.+.....++++|+||++|+++... T Consensus 4 ~~~kv~s~Nv~g~~~~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~k~~~~~~ 83 (236) T d1vyba_ 4 SHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGKQKKAGVAILVSDKTDFK 83 (236) T ss_dssp CCEEEEEEECSCCCSHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEECCSSSSCCEEEEECTTCCCE T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCCEEEEEECCCCCC T ss_conf 98699999928961245588999999877985999983547623263454225404897510112221146760365212 Q ss_pred EECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC Q ss_conf 63255564432330101100023207999631046678544310123677776553322232014760000110146867 Q gi|254780288|r 80 VTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQ 159 (281) Q Consensus 80 ~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~ 159 (281) ..... .+.++++..+.+...+..++++|+|+|++.. . ++..++...+.. ..++|+|+|||||+++. T Consensus 84 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~---~------~~~~~~~~~~~~--~~~~~~Il~GDfN~~~~ 149 (236) T d1vyba_ 84 PTKIK---RDKEGHYIMVKGSIQQEELTILNIYAPNTGA---P------RFIKQVLSDLQR--DLDSHTLIMGDFNTPLS 149 (236) T ss_dssp EEEEE---ECTTSSEEEEEEEETTEEEEEEEEECCSSSH---H------HHHHHHHHHTTT--TCCTTEEEEEECSSCSS T ss_pred CCCCC---CCCCCCCEEEEEEECCCCCEEEEECCCCCCC---H------HHHHHHHHHHCC--CCCCEEEEEECCCCCCC T ss_conf 35642---1113431001343136762467741321220---7------888766554113--44320699630255543 Q ss_pred CCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE Q ss_conf 42000012104873446345565321033100000013378887200357876752557771356999477898333202 Q gi|254780288|r 160 PHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239 (281) Q Consensus 160 ~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~ 239 (281) +.|..+. .....+++.....+.+.|+.|+||..++.+..||||+...+ .++||||||+|+.+..++..+ T Consensus 150 ~~d~~~~------~~~~~~~~~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~-----~~~RiD~il~s~~~~~~~~~~ 218 (236) T d1vyba_ 150 TLDRSTR------QKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHH-----TYSKIDHIVGSKALLSKCKRT 218 (236) T ss_dssp GGGBTTC------CCCCHHHHHHHHHHHHTTEEEHHHHHCTTCCCCSEEETTTT-----EEECCEEEEEEGGGGGGEEEE T ss_pred HHHHCCC------CCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCC-----CCCEEEEEEECHHHHHHCEEE T ss_conf 3441354------21103578899999864123321100147864333278899-----776367999871897224089 Q ss_pred EEECHHHCCCCCCCCCCEEEEEE Q ss_conf 87122206867676221999995 Q gi|254780288|r 240 RIDTKPRGWTKPSDHTPVIVSLD 262 (281) Q Consensus 240 ~I~~~~~~~~~~SDH~Pv~~~l~ 262 (281) +|+.. .+|||+||+++|. T Consensus 219 ~i~~~-----~~SDH~pv~~~lk 236 (236) T d1vyba_ 219 EIITN-----YLSDHSAIKLELR 236 (236) T ss_dssp EEECC-----SSSSSCEEEEEEC T ss_pred EECCC-----CCCCCCCEEEEEC T ss_conf 98999-----7998101899959 No 4 >d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Probab=100.00 E-value=1.2e-39 Score=239.64 Aligned_cols=251 Identities=12% Similarity=0.144 Sum_probs=167.2 Q ss_pred CCCEEEEEEECCHHHH--HHHHHHHHHHHCCCE--EEEEEEECCHHHCCH---------HHHHHCCCEEEEEECCCCCCE Q ss_conf 7007998710318888--998999998728988--999856579445897---------787328978999304776514 Q gi|254780288|r 2 SVVTVATWNVNSIRAR--IHNLAAWIKENNPDI--ICLQETKTEDKNFPF---------ETLQSLNYHIETCGQKSYNGV 68 (281) Q Consensus 2 ~~lrI~TwNinglr~r--~~~l~~~l~~~~pDI--i~LQEvk~~~~~~~~---------~~~~~~gy~~~~~~~k~~~Gv 68 (281) .+|+|+||||||+|++ ++.+.+++++++||| |||||++..+..+.. +.+...+|.......++..|+ T Consensus 5 ~~v~I~TwNv~~~~~~~~~~~~l~~i~~~~pDI~vI~lQE~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 84 (280) T d2imqx1 5 LSVHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNTITETMGL 84 (280) T ss_dssp EEEEEEEEEEETCCCCSCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTEEEEEEEECSSEEE T ss_pred EEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECEEE T ss_conf 59999988889973872889885624468989899970736856113623489999999872448715898610203179 Q ss_pred EEEEEECCEE-------EEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 8987403137-------863255564432330101100023207999631046678544310123677776553322232 Q gi|254780288|r 69 AILSKYQPIE-------IVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQR 141 (281) Q Consensus 69 aIlsk~~~~~-------v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~ 141 (281) ++++|.+... ....+..... ....+.+++.+.+..+.++|+|+|++......+ .+...+....... T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~i~~~~~~~in~hl~~~~~~~~~~-----~~~~~~~~~~~~~ 157 (280) T d2imqx1 85 TVYCLEKHLDQNTLKNETIIVTVDDQK--KSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNT-----KYAYDTRLDYSKK 157 (280) T ss_dssp EEEEEGGGCCTTTCCCEEEEEECSTTS--CSEEEEEEEEETTEEEEEEEEECCTTCCCTTSS-----SSSCCGGGCTTSS T ss_pred EEEECCCCCCCCEECCEEEECCCCCCC--CCCEEEEEEEECCEEEEEECCCCCCCCHHHHHH-----HHHHHHHHHHHHH T ss_conf 999726544554002216750477556--775899999999999996345678660367889-----8877776655541 Q ss_pred HCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCC Q ss_conf 01476000011014686742000012104873446345565321033100000013378887200357876752557771 Q gi|254780288|r 142 LELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGI 221 (281) Q Consensus 142 ~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~ 221 (281) .....++|+|||||+.+...|.+...... .....++..++.+...+..++|+.+++.+..||||++..+.+..+.|+ T Consensus 158 ~~~~~~vi~~GD~N~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~~~~~~~~~ 234 (280) T d2imqx1 158 DDPSDFLFWIGDLNVRVETNATHAKSLVD---QNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLS 234 (280) T ss_dssp SSCCSEEEEEEECSCCBCSCHHHHHHHHH---TTCHHHHHTTBTHHHHHHTTSSTTCBCCCCCSCCCBCBCTTSSCBCTT T ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHH---CCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 26777268722454444556277776642---133021689999987532125215536999989743356765567886 Q ss_pred EE----EEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEECC Q ss_conf 35----69994778983332028712220686767622199999558 Q gi|254780288|r 222 RI----DHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIP 264 (281) Q Consensus 222 RI----D~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~lp 264 (281) || ||||+++.+...++.+.+.. .....+|||+||+|+|+|. T Consensus 235 Rip~~iD~Il~~~~~~~~v~~~~y~~--~~~~~~SDH~PV~a~F~l~ 279 (280) T d2imqx1 235 ATPSWTDRALYKSGTGKTIQPLSYNS--LTNYKQTEHRPVLAKFRVT 279 (280) T ss_dssp SCCBCCEEEEEECSSSCCEEEEEEEE--CTTCCSSSSCCEEEEEEEE T ss_pred CCCCCCCEEEEECCCCCCEEEEEEEE--CCCCCCCCCHHEEEEEEEE T ss_conf 36765777997886689518989788--8998878883069999997 No 5 >d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Probab=100.00 E-value=1.6e-34 Score=210.85 Aligned_cols=223 Identities=14% Similarity=0.154 Sum_probs=141.1 Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEE--CCCCCCEEEEEEECCEEEE Q ss_conf 00799871031888899899999872898899985657944589778732897899930--4776514898740313786 Q gi|254780288|r 3 VVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCG--QKSYNGVAILSKYQPIEIV 80 (281) Q Consensus 3 ~lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~--~k~~~GvaIlsk~~~~~v~ 80 (281) -|||+||||++.+++...+..++.+.+||||||||++...... .....++.++... .++..|++++++.+..... T Consensus 2 p~rV~~~Nv~~~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (228) T d1wdua_ 2 PYRVLQANLQRKKLATAELAIEAATRKAAIALIQEPYVGGAKS---MKGFRGVRVFQSTAQGDGTVKAAIAVFDHDLDVI 78 (228) T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHTCSEEEEESCCC---------CCCSSCEEEECCCCTTCCCCEEEEECCSSCEEE T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CCCCCCEEEEECCCCCCCCCCEEEEEECCCCCEE T ss_conf 8789942039976789999999973699789998787489885---3113623788345778987625999981464045 Q ss_pred ECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC Q ss_conf 32555644323301011000232079996310466785443101236777765533222320147600001101468674 Q gi|254780288|r 81 THLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQP 160 (281) Q Consensus 81 ~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~ 160 (281) . .+... ..+.+.+.+...+..++++|+|+|++.+.. .+++.+...+.. ....++|+|||||+.+.. T Consensus 79 ~-~~~~~---~~~~~~~~i~~~~~~i~v~~~y~~~~~~~~--------~~~~~l~~~~~~--~~~~~vIi~GDfN~~~~~ 144 (228) T d1wdua_ 79 Q-YPQLT---TNNIVVVGIRTRAWEITLVSYYFEPDKPIE--------SYLEQIKRVERK--MGPKRLIFGGDANAKSTW 144 (228) T ss_dssp E-CTTTC---CSSEEEEEEECSSCEEEEEEEECCTTSCSH--------HHHHHHHHHHHT--TCSSSEEEEEECCCCCGG T ss_pred C-CCCCC---CCCEEEEEEECCCCCEEEEEEEECCCCCCH--------HHHHHHHHHHHH--CCCCEEEEECCCCCCCHH T ss_conf 0-46778---899799999828802899999818743106--------899999999874--589539992253557566 Q ss_pred CCCHHHHHCCCCCCCCHHHHHHHHH-CCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE Q ss_conf 2000012104873446345565321-033100000013378887200357876752557771356999477898333202 Q gi|254780288|r 161 HDCYNPIIWENDACFTLEVRQSFQK-LQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239 (281) Q Consensus 161 ~D~~~~~~~~~~~~~~~~er~~~~~-l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~ 239 (281) .+ .. . .......+.. +...++.+. .....+|||..+.+.+.. .||||+|+|+.+..++.++ T Consensus 145 ~~---~~------~-~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~rID~~~~s~~l~~~v~~~ 206 (228) T d1wdua_ 145 WG---SK------E-DDARGDQLMGTLGELGLHIL-----NEGDVPTFDTIRGGKRYQ---SRVDVTFCTEDMLDLIDGW 206 (228) T ss_dssp GT---CS------S-CCHHHHHHHHHHHHHTCEEC-----CCSCCCSEEC-----CCE---ECCEEEEECGGGBTTEEEE T ss_pred HH---CC------C-CHHHHHHHHHHHHHHCCCCC-----CCCCCCCCCCCCCCCCCC---CCEEEEEECCHHHHHCEEE T ss_conf 73---24------3-20578999999986075311-----257732200356787888---5448999780586213599 Q ss_pred EEECHHHCCCCCCCCCCEEEEEECC Q ss_conf 8712220686767622199999558 Q gi|254780288|r 240 RIDTKPRGWTKPSDHTPVIVSLDIP 264 (281) Q Consensus 240 ~I~~~~~~~~~~SDH~Pv~~~l~lp 264 (281) .|..... .|||.||+++|++. T Consensus 207 ~v~~~~~----~SDH~~v~~~l~~~ 227 (228) T d1wdua_ 207 RVDEDLV----SSDHNGMVFNIRLQ 227 (228) T ss_dssp EECTTSS----SSSBCCEEEEECCC T ss_pred EECCCCC----CCCCHHEEEEEEEE T ss_conf 9989999----99935769999971 No 6 >d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Probab=100.00 E-value=7.4e-33 Score=201.42 Aligned_cols=242 Identities=15% Similarity=0.157 Sum_probs=130.5 Q ss_pred CCCCEEEEEEEC----------CHHHHHHHHHHHHHHHCCCEEEEEEEECCHHH-CCHHHHHHCCCEEEEE--------- Q ss_conf 970079987103----------18888998999998728988999856579445-8977873289789993--------- Q gi|254780288|r 1 MSVVTVATWNVN----------SIRARIHNLAAWIKENNPDIICLQETKTEDKN-FPFETLQSLNYHIETC--------- 60 (281) Q Consensus 1 m~~lrI~TwNin----------glr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~-~~~~~~~~~gy~~~~~--------- 60 (281) +.-|||+||||. |.+.|.+.+.+.|...+|||||||||...... .....+.. .|..... T Consensus 2 ~~~lki~s~Nv~~~~~~~~~~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 80 (293) T d1zwxa1 2 PGNFKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLRE-MYPHQTPVIGRSKHGW 80 (293) T ss_dssp CCSCEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTT-TCCEECCCTTSCSTTC T ss_pred CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH-HCCCEEHHCCCCCCCC T ss_conf 997789988468576555898278999999999997569988999846774258999987765-4140000011345432 Q ss_pred -----E----CCCCCCEEEEEEECCEEEEECCCCCC--CC--CCCCEECCCCCCCCCEEEEEEEECCCCCCCCCC--CHH Q ss_conf -----0----47765148987403137863255564--43--233010110002320799963104667854431--012 Q gi|254780288|r 61 -----G----QKSYNGVAILSKYQPIEIVTHLPGDD--LD--VQARFIEATFTINTQTLRIGNLYLPHGNPITST--KYD 125 (281) Q Consensus 61 -----~----~k~~~GvaIlsk~~~~~v~~~~~~~~--~d--~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~--~~~ 125 (281) . ....+|++|+||+|+........... .+ ....++.+.+...+..+.|+|+|++++.+.... ... T Consensus 81 ~~~~~~~~~~~~~~~g~~ilsr~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~ 160 (293) T d1zwxa1 81 DKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRA 160 (293) T ss_dssp SEEEC-----CCBCCCCEEEESSCEEEEEEEECSCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHH T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCCHHHHHH T ss_conf 21114544320126626999646754421565202454200134148999996399347999844103677530357799 Q ss_pred HHHHHHHHHHHHHHHH-HCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCC-CC Q ss_conf 3677776553322232-014760000110146867420000121048734463455653210331000000133788-87 Q gi|254780288|r 126 DKISWIKRFLRFASQR-LELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDT-HH 203 (281) Q Consensus 126 ~k~~~~~~l~~~l~~~-~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~-~~ 203 (281) .|..+++++..++.+. ...+.|+|||||||+.+.+.... ..++ ..++.++....... .. T Consensus 161 ~r~~~~~~~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~----------------~~~~---~~~~~~~~~~~~~~~~~ 221 (293) T d1zwxa1 161 IRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYH----------------DMLK---LLNVSSPANFNGQMATW 221 (293) T ss_dssp HHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHHHH----------------HHHH---HHTBCCCTTCCTTSCSB T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHH----------------HHHH---HCCCCCHHHCCCCCCCC T ss_conf 9999898865455540368898489980669898855788----------------8875---33655532304677644 Q ss_pred CEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE-EE----------ECHHH--CCCCCCCCCCEEEEEE Q ss_conf 200357876752557771356999477898333202-87----------12220--6867676221999995 Q gi|254780288|r 204 LYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA-RI----------DTKPR--GWTKPSDHTPVIVSLD 262 (281) Q Consensus 204 ~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~-~I----------~~~~~--~~~~~SDH~Pv~~~l~ 262 (281) ..++..+....+..+.+.||||||+|+......... .+ ..... ....+|||+||+|+++ T Consensus 222 ~~~~~~~~~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~A~~~ 293 (293) T d1zwxa1 222 DPTTNSMLKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVGFTD 293 (293) T ss_dssp CTTTCHHHHHHCTTSCCBCCEEEEEBTTSCCCSCEEEEECCCCCCCEEEEETTEEEEECCSSSSCCEEEEEC T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEC T ss_conf 553244445455789886078999846303643222047752166301134335688899488178499959 No 7 >d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Probab=99.98 E-value=1.9e-33 Score=204.78 Aligned_cols=244 Identities=17% Similarity=0.176 Sum_probs=130.1 Q ss_pred CCCEEEEEEECC----------HHHHHHHHHHHHHHHCCCEEEEEEEECCHH--HCCHHHHHHCCCEEEEEE-------- Q ss_conf 700799871031----------888899899999872898899985657944--589778732897899930-------- Q gi|254780288|r 2 SVVTVATWNVNS----------IRARIHNLAAWIKENNPDIICLQETKTEDK--NFPFETLQSLNYHIETCG-------- 61 (281) Q Consensus 2 ~~lrI~TwNing----------lr~r~~~l~~~l~~~~pDIi~LQEvk~~~~--~~~~~~~~~~gy~~~~~~-------- 61 (281) .++||+||||.+ .+.|.+.+.+.|..++|||||||||..... .+.......++|.....+ T Consensus 2 ~tl~v~s~Nv~~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 81 (299) T d2ddra1 2 DTLKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQTAVLGRSSGSEWD 81 (299) T ss_dssp CEEEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEECCCTTSCCSTTSS T ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCC T ss_conf 96699987788465466887278899999999987569988999926776527888888887567403321345555554 Q ss_pred ---------CCCCCCEEEEEEECCEEEEECCCCCC--CCC--CCCEECCCCCCCCCEEEEEEEECCCCCCCCCCC--HHH Q ss_conf ---------47765148987403137863255564--432--330101100023207999631046678544310--123 Q gi|254780288|r 62 ---------QKSYNGVAILSKYQPIEIVTHLPGDD--LDV--QARFIEATFTINTQTLRIGNLYLPHGNPITSTK--YDD 126 (281) Q Consensus 62 ---------~k~~~GvaIlsk~~~~~v~~~~~~~~--~d~--~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~--~~~ 126 (281) ....+|++++||+|+........... .+. ...++...+...+..|.|+|+|++++.+..... ... T Consensus 82 ~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~~ 161 (299) T d2ddra1 82 KTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASV 161 (299) T ss_dssp EEEESCCTTCSSCCCCEEEESSCEEEEEEEECSCCC----CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHH T ss_pred EEEECCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHH T ss_conf 02301234310264169999861113134553113575543420699999806980899997246678775310246889 Q ss_pred HHHHHHHHHHHHHH-HHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCC-----CCHHHHCCCCCC Q ss_conf 67777655332223-201476000011014686742000012104873446345565321033-----100000013378 Q gi|254780288|r 127 KISWIKRFLRFASQ-RLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQN-----MGFTDAIRATHD 200 (281) Q Consensus 127 k~~~~~~l~~~l~~-~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~-----~gl~D~~r~~~~ 200 (281) |..++..+...+.. ....+.|+|+|||||+.+.+.+...... -+..++.+.. .+...+++ + T Consensus 162 r~~q~~~~~~~~~~~~~~~~~~vi~~GDfN~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~t~~---~ 228 (299) T d2ddra1 162 RTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSE----------YASMFKTLNASVPSYTGHTATWD---A 228 (299) T ss_dssp HHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCTTSH----------HHHHHHHHTBCCCEEEECSCSBC---T T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCHHH----------HHHHHHHHCCCCCCCCCCCCCCC---C T ss_conf 9999998765655420256651799723788865144401045----------66666432001222257765434---3 Q ss_pred CCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHC-----------EEEECH--HHCCCCCCCCCCEEEEEEC Q ss_conf 88720035787675255777135699947789833320-----------287122--2068676762219999955 Q gi|254780288|r 201 THHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHS-----------ARIDTK--PRGWTKPSDHTPVIVSLDI 263 (281) Q Consensus 201 ~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~-----------~~I~~~--~~~~~~~SDH~Pv~~~l~l 263 (281) ....++. ..+..+.+.||||||+|+.+...... +..... ......+|||+||+++|+| T Consensus 229 ~~~~~~~-----~~~~~~~~~riDyI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~a~l~L 299 (299) T d2ddra1 229 TTNSIAK-----YNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATISM 299 (299) T ss_dssp TTCHHHH-----HHCTTSCCBCCEEEEEBTTSCCCSEEEEEECCCCCCCEEEEETTEEEEECCSCSSCCEEEEEEC T ss_pred CCCCCCC-----CCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC T ss_conf 3344445-----4568899842568995551048632424785024332200122257788995862228999989 No 8 >d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Probab=99.98 E-value=3.8e-33 Score=203.07 Aligned_cols=217 Identities=16% Similarity=0.094 Sum_probs=123.4 Q ss_pred CCCCEEEEEEECCHHHHHH-----HHH-HHHHHHCCCEEEEEEEECCHHH--CCHHHHHHCCCEE--------------- Q ss_conf 9700799871031888899-----899-9998728988999856579445--8977873289789--------------- Q gi|254780288|r 1 MSVVTVATWNVNSIRARIH-----NLA-AWIKENNPDIICLQETKTEDKN--FPFETLQSLNYHI--------------- 57 (281) Q Consensus 1 m~~lrI~TwNinglr~r~~-----~l~-~~l~~~~pDIi~LQEvk~~~~~--~~~~~~~~~gy~~--------------- 57 (281) ++.+||+||||+|.+...+ .+. .++...+|||||||||+..... +....+...++.+ T Consensus 2 ~~~~rv~TwNi~~~~~~~~~~~~~~~~~~~~~~~~~DVl~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (250) T d2f1na1 2 LTDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQQ 81 (250) T ss_dssp GGGCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSSSCE T ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCE T ss_conf 87889999947977576556555999999986689899999826863343366765443027642002321344567632 Q ss_pred --EEE----ECCCCCCEEEEEEECCEEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHH Q ss_conf --993----04776514898740313786325556443233010110002320799963104667854431012367777 Q gi|254780288|r 58 --ETC----GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWI 131 (281) Q Consensus 58 --~~~----~~k~~~GvaIlsk~~~~~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~ 131 (281) .+. ...+..|++++||+++..+....+... ...+++.++ .+.++|+|+|+|++...+..+ +.++. T Consensus 82 ~~~~~~~~~~~~~~~g~~i~s~~~~~~~~~~~~~~~--~~r~~~~~~----~~~~~v~n~Hl~~~~~~~~~~---~~~~~ 152 (250) T d2f1na1 82 VYIYFSAVDALGGRVNLALVSNRRADEVFVLSPVRQ--GGRPLLGIR----IGNDAFFTAHAIAMRNNDAPA---LVEEV 152 (250) T ss_dssp EEEEEECSCSSSCSSCEEEEESSCCSEEEEECCSST--TCCCEEEEE----ETTEEEEEEECCSSSSCSHHH---HHHHH T ss_pred EEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCCC--CCCCEEEEE----ECEEEEEEEECCCCCCHHHHH---HHHHH T ss_conf 678751145446571459998875305675178754--221103676----320899999818999565999---99999 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCC Q ss_conf 65533222320147600001101468674200001210487344634556532103310000001337888720035787 Q gi|254780288|r 132 KRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYY 211 (281) Q Consensus 132 ~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~ 211 (281) +.+.+.+.....+..|+|+|||||+.|.+.. .....++.|.++..++.. +||. T Consensus 153 ~~~~~~~~~~~~~~~~~iv~GDfN~~p~~~~----------------------~~~~~~~~~~~~~~~~~~--~t~~--- 205 (250) T d2f1na1 153 YNFFRDSRDPVHQALNWMILGDFNREPADLE----------------------MNLTVPVRRASEIISPAA--ATQT--- 205 (250) T ss_dssp HHHHHTCSSHHHHTCEEEEEEECSSCHHHHH----------------------TTSCHHHHHTEEEECCSS--CSBT--- T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHH----------------------HHHHCCCCCEEEECCCCC--CCCC--- T ss_conf 9999998764146886687345576871255----------------------554201122123218798--8657--- Q ss_pred CCCCCCCCCCEEEEEEECHHHHHHHHCEE--EECHHHCCCCCCCCCCEEEE Q ss_conf 67525577713569994778983332028--71222068676762219999 Q gi|254780288|r 212 ADSWSKNKGIRIDHIMLSPEATSLLHSAR--IDTKPRGWTKPSDHTPVIVS 260 (281) Q Consensus 212 ~~~~~~n~G~RID~il~s~~l~~~v~~~~--I~~~~~~~~~~SDH~Pv~~~ 260 (281) .|+||||||+|+++..+..... +.........+|||+||.+. T Consensus 206 -------~~~riD~i~~s~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~ 249 (250) T d2f1na1 206 -------SQRTLDYAVAGNSVAFRPSPLQAGIVYGARRTQISSDHFPVGVS 249 (250) T ss_dssp -------TSCCCEEEEEEESSCCCCCCCEEEETTTTSCCCCSCSBCCEEEE T ss_pred -------CCCCEEEEEEECHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEE T ss_conf -------99957999982668626413678875143589971884255876 No 9 >d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Probab=99.96 E-value=5.7e-30 Score=185.20 Aligned_cols=223 Identities=18% Similarity=0.096 Sum_probs=124.0 Q ss_pred CCCCEEEEEEECCHHH------HHHHHHHHHHHHCCCEEEEEEEECCHHHC--CHHHHHHCCC--EEEE----------- Q ss_conf 9700799871031888------89989999987289889998565794458--9778732897--8999----------- Q gi|254780288|r 1 MSVVTVATWNVNSIRA------RIHNLAAWIKENNPDIICLQETKTEDKNF--PFETLQSLNY--HIET----------- 59 (281) Q Consensus 1 m~~lrI~TwNinglr~------r~~~l~~~l~~~~pDIi~LQEvk~~~~~~--~~~~~~~~gy--~~~~----------- 59 (281) |+.+||+||||+|++. +......+++..+|||||||||....... ........++ ..+. T Consensus 2 ~~~~rv~TwNi~~~~~~~~~~~~~~~~~~~~~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (261) T d1sr4b_ 2 LSDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNM 81 (261) T ss_dssp GGGSCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSSCCE T ss_pred CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCE T ss_conf 87888999967968787555544899999985579998999856754563267998876507651144311466667753 Q ss_pred ----E----ECCCCCCEEEEEEECCEEEEECCCCCCCCCCCCE-ECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHH Q ss_conf ----3----0477651489874031378632555644323301-011000232079996310466785443101236777 Q gi|254780288|r 60 ----C----GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARF-IEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISW 130 (281) Q Consensus 60 ----~----~~k~~~GvaIlsk~~~~~v~~~~~~~~~d~~~R~-i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~ 130 (281) . ..+.++|+||+||.|+..+....+... ....|. +.+.+ ....++++|+.+........ ..... T Consensus 82 ~~~~~~~~~~~~~~~g~~~ls~~~~~~~~~~~~~~~-~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (261) T d1sr4b_ 82 VYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSS-VLQSRPAVGIRI----GTDVFFTVHALATGGSDAVS--LIRNI 154 (261) T ss_dssp EEEEEECCCTTTSCSCEEEEESSCCSEEEEECCCCC-SSCCCCEEEEEE----TTEEEEEEECCTTTTTTHHH--HHHHH T ss_pred EEEEEECCCCCCCEEEEEEEECCCCCCCEECCCCCC-CCCCCEEEEEEE----ECCCCEEEEEEECCCCCCHH--HHHHH T ss_conf 689950443345301259996887501045368876-666522799998----41551479996147751279--99999 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCC Q ss_conf 76553322232014760000110146867420000121048734463455653210331000000133788872003578 Q gi|254780288|r 131 IKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDY 210 (281) Q Consensus 131 ~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~ 210 (281) ...+..........+.|+|+|||||..+.+ ..+..+.+.++.|+++..++.. +||++ T Consensus 155 ~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~--~t~~~- 211 (261) T d1sr4b_ 155 FTTFNSSSSPPERRVYSWMVVGDFNRAPAN--------------------LEVALRQEPAVSENTIIIAPTE--PTHRS- 211 (261) T ss_dssp HHHHHC---CGGGGGCEEEEEEECSSCHHH--------------------HHHHHTTSHHHHHTCEEECCSS--CSBTT- T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCC--------------------HHHHHHHHHCCCCCEECCCCCC--CCCCC- T ss_conf 999999999863569977996332767640--------------------8888766410222100158998--96898- Q ss_pred CCCCCCCCCCCEEEEEEECHHHHHHHH------CEEEECHHHCCCCCCCCCCEEEEEE Q ss_conf 767525577713569994778983332------0287122206867676221999995 Q gi|254780288|r 211 YADSWSKNKGIRIDHIMLSPEATSLLH------SARIDTKPRGWTKPSDHTPVIVSLD 262 (281) Q Consensus 211 ~~~~~~~n~G~RID~il~s~~l~~~v~------~~~I~~~~~~~~~~SDH~Pv~~~l~ 262 (281) |.||||||+++.....+. .+.+.........+|||+||...++ T Consensus 212 ---------~~~iD~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~f~~~ 260 (261) T d1sr4b_ 212 ---------GNILDYAILHDAHLPRREQARERIGASLMLNQLRSQITSDHFPVSFVRD 260 (261) T ss_dssp ---------SCCCEEEEEECTTSCTTCGGGCCEEEEECGGGCSSCCSSSBCCEEEEEC T ss_pred ---------CCEECEEEECCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEC T ss_conf ---------9803669966800032540441102355202357996177841089868 No 10 >d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Probab=99.96 E-value=1.4e-28 Score=177.42 Aligned_cols=225 Identities=15% Similarity=0.066 Sum_probs=115.4 Q ss_pred CEEEEEEECCH--H-HHHHHHHHHHHH--HCCCEEEEEEEECCHHHCCHHHHHH----C--CCEEEEEECC----CCCCE Q ss_conf 07998710318--8-889989999987--2898899985657944589778732----8--9789993047----76514 Q gi|254780288|r 4 VTVATWNVNSI--R-ARIHNLAAWIKE--NNPDIICLQETKTEDKNFPFETLQS----L--NYHIETCGQK----SYNGV 68 (281) Q Consensus 4 lrI~TwNingl--r-~r~~~l~~~l~~--~~pDIi~LQEvk~~~~~~~~~~~~~----~--gy~~~~~~~k----~~~Gv 68 (281) |||+||||+++ . .+.+...++|.+ ++|||||||||+..........+.. . .+.+...... ...+. T Consensus 1 lrI~s~Ni~~~~~~~~~~~~~~~~l~~~i~~~DIi~LQEv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (260) T d2a40b1 1 LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERY 80 (260) T ss_dssp CEEEEEEEEEESHHHHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCCBCSSSCCBEE T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCE T ss_conf 98999968834778666599999999874799989999623477416999998643114675036741567777543100 Q ss_pred EEEEEECCEEEEECCCCCCCC--C----CCC---E-ECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 898740313786325556443--2----330---1-01100023207999631046678544310123677776553322 Q gi|254780288|r 69 AILSKYQPIEIVTHLPGDDLD--V----QAR---F-IEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFA 138 (281) Q Consensus 69 aIlsk~~~~~v~~~~~~~~~d--~----~~R---~-i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l 138 (281) +++.+.....+.......... . ..+ . ....+......+.+++.|.... ....+..+...+.+.+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 154 (260) T d2a40b1 81 LFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPS------DAVAEINSLYDVYLDV 154 (260) T ss_dssp EEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGG------GHHHHHHHHHHHHHHH T ss_pred EEEECCCCCCEECCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCC------HHHHHHHHHHHHHHHH T ss_conf 2541254420111200013555676543332310212110345624799986415543------0368888899999999 Q ss_pred HHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCC Q ss_conf 23201476000011014686742000012104873446345565321033100000013378887200357876752557 Q gi|254780288|r 139 SQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKN 218 (281) Q Consensus 139 ~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n 218 (281) ... ..+.|+|+|||||..+.... ++.+...++.+.+.........+||+.. + T Consensus 155 ~~~-~~~~~~iv~GDfN~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 206 (260) T d2a40b1 155 QQK-WHLNDVMLMGDFNADCSYVT--------------------SSQWSSIRLRTSSTFQWLIPDSADTTAT-------S 206 (260) T ss_dssp HHH-HCCCCEEEEEECCCSTTTSC--------------------GGGGGGCHHHHSTTEEESSCTTCCCBSS-------S T ss_pred HHH-CCCCCEEECCCCCCCCCCHH--------------------HHHHHHHCCCCCCCCCCCCCCCCCCCCC-------C T ss_conf 863-45788797665567865234--------------------5555441432221111267888763347-------9 Q ss_pred CCCEEEEEEECHHHHHHHHC---EEEECHHH-------CCCCCCCCCCEEEEEE Q ss_conf 77135699947789833320---28712220-------6867676221999995 Q gi|254780288|r 219 KGIRIDHIMLSPEATSLLHS---ARIDTKPR-------GWTKPSDHTPVIVSLD 262 (281) Q Consensus 219 ~G~RID~il~s~~l~~~v~~---~~I~~~~~-------~~~~~SDH~Pv~~~l~ 262 (281) .++||||||+|+.+...... ..+..... ....+|||+||+++|. T Consensus 207 ~~~~iD~i~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SDH~PV~v~ls 260 (260) T d2a40b1 207 TNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT 260 (260) T ss_dssp CCCCCEEEEEESHHHHHHBCTTCCEECCHHHHTTCCHHHHHHHCSBCCEEEEBC T ss_pred CCCCEEEEEECCHHHCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC T ss_conf 998556899684461542632501442023212556335798077426799959 No 11 >d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Probab=99.96 E-value=2.4e-29 Score=181.67 Aligned_cols=252 Identities=17% Similarity=0.118 Sum_probs=144.1 Q ss_pred CEEEEEEECCHHHHHHHHHHHHH---HHCCCE--EEEEEEE-CCHHHC--------------CHHHH-----HHCCCEEE Q ss_conf 07998710318888998999998---728988--9998565-794458--------------97787-----32897899 Q gi|254780288|r 4 VTVATWNVNSIRARIHNLAAWIK---ENNPDI--ICLQETK-TEDKNF--------------PFETL-----QSLNYHIE 58 (281) Q Consensus 4 lrI~TwNinglr~r~~~l~~~l~---~~~pDI--i~LQEvk-~~~~~~--------------~~~~~-----~~~gy~~~ 58 (281) +.|+||||||.+.+ +.+.+||. ...||| |||||+. .....+ ....+ ...+|... T Consensus 27 I~v~TWNv~~~~~~-~~l~~~l~~~~~~~~DI~viglQEi~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~Y~~v 105 (345) T d1i9za_ 27 IFVASYNLNGCSAT-TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQL 105 (345) T ss_dssp EEEEEEECTTCCCC-SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHTCCSSCCEEEE T ss_pred EEEEEECCCCCCCC-CCHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEE T ss_conf 99999867996388-05687646678899999999762477363223103674246789999987535011679984899 Q ss_pred EEECCCCCCEEEEEEECCEE----E-----EECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHH Q ss_conf 93047765148987403137----8-----63255564432330101100023207999631046678544310123677 Q gi|254780288|r 59 TCGQKSYNGVAILSKYQPIE----I-----VTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKIS 129 (281) Q Consensus 59 ~~~~k~~~GvaIlsk~~~~~----v-----~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~ 129 (281) ...+.+..+++|++|.++.. + .+++.+ ..+.. ..+.+.+.+.+..+.|+|+|+|+|......|...... T Consensus 106 ~~~~~~g~~l~vf~r~~~~~~i~~v~~~~~~~g~~g-~~gnK-GaV~vr~~i~~t~l~fvn~HL~ag~~~~~~R~~~~~~ 183 (345) T d1i9za_ 106 RSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGG-VSGNK-GAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRT 183 (345) T ss_dssp EEEEETTEEEEEEEEGGGGGGEEEEEEEEEECCCC-----CC-EEEEEEEEETTEEEEEEEEECCCCSSCHHHHHHHHHH T ss_pred EEECCCCCEEEEEECCHHCCCCCCCEEEEEECCCCC-CCCCC-CEEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHH T ss_conf 973106708999982511155653126789657688-53688-6499999998999999970466766306778878999 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCE---E Q ss_conf 7765533222320147600001101468674200001210487344634556532103310000001337888720---0 Q gi|254780288|r 130 WIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLY---S 206 (281) Q Consensus 130 ~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~y---T 206 (281) +++.+.............+++|||||......|....+...... + ....+..+-..+....++|+.+...+-.| . T Consensus 184 i~~~l~~~~~~~~~~~d~v~~~GDlN~R~~~~~~~~~~~i~~~~-~-~~l~~~dql~~~~~~~~~~~~~~E~~I~F~PTy 261 (345) T d1i9za_ 184 IASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGK-L-SYLFEYDQLNKQMLTGKVFPFFSELPITFPPTY 261 (345) T ss_dssp HHHHCCCGGGCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTC-H-HHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCB T ss_pred HHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCC-H-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 99861135565545675269962323134675166676542242-6-678899998765543471447403887899998 Q ss_pred CCCCCCCCCCCCCCCEE----EEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEECCCCC Q ss_conf 35787675255777135----69994778983332028712220686767622199999558877 Q gi|254780288|r 207 FWDYYADSWSKNKGIRI----DHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIPEPR 267 (281) Q Consensus 207 ~~~~~~~~~~~n~G~RI----D~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~lp~~~ 267 (281) +|++....++.+.|+|| |+||.+..+. +.. +.. .....|||.||.+.|++.-+. T Consensus 262 k~~~~~~~yd~~~k~RiPsWcDRIL~~~~~~--~~~--Y~s---~~~~~SDH~PV~a~f~v~v~~ 319 (345) T d1i9za_ 262 KFDIGTDIYDTSDKHRVPAWTDRILYRGELV--PHS--YQS---VPLYYSDHRPIYATYEANIVK 319 (345) T ss_dssp CBCTTSSCBCCSTTCCCCBCCEEEEEESSCE--EEE--EEE---CCCCSSSBCCEEEEEEEEEEE T ss_pred EEECCCCCCCCCCCEECCCCCCEEEEECCEE--EEE--EEC---CCCCCCCCCCEEEEEEEEEEE T ss_conf 0778987667778814724336598637625--646--603---687788844689999999888 No 12 >d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum tuberosum) [TaxId: 4113]} Probab=42.47 E-value=0.43 Score=22.92 Aligned_cols=21 Identities=5% Similarity=0.200 Sum_probs=16.3 Q ss_pred HHHHHHHHHHHHCCCEEEEEE Q ss_conf 899899999872898899985 Q gi|254780288|r 17 RIHNLAAWIKENNPDIICLQE 37 (281) Q Consensus 17 r~~~l~~~l~~~~pDIi~LQE 37 (281) -.+++++|+++...+++-+-= T Consensus 48 ~a~~fvd~l~~~G~~~wQiLP 68 (523) T d1x1na1 48 QAFKFLDWLHLAGCSLWQVLP 68 (523) T ss_dssp HHHHHHHHHHHHTCCEEECCC T ss_pred HHHHHHHHHHHCCCCEEEEEC T ss_conf 999999999986999899818 No 13 >d1xm7a_ d.159.1.8 (A:) Hypothetical protein aq_1666 {Aquifex aeolicus [TaxId: 63363]} Probab=37.84 E-value=3.6 Score=17.71 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=14.2 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCC Q ss_conf 655332223201476000011014 Q gi|254780288|r 132 KRFLRFASQRLELEEPLIFAGDYN 155 (281) Q Consensus 132 ~~l~~~l~~~~~~~~~vIi~GDFN 155 (281) +.+.+.+.+....+..++++|||= T Consensus 31 ~~ii~~wn~~V~~~D~v~~LGD~~ 54 (188) T d1xm7a_ 31 IVILTNLLKVLKPEDTLYHLGDFT 54 (188) T ss_dssp HHHHHHHHTTCCTTCEEEECSCCB T ss_pred HHHHHHHHHHCCCCCEEEEECCCC T ss_conf 999999996268898899948841 No 14 >d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=26.42 E-value=16 Score=14.05 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=22.1 Q ss_pred CCEEEEEEEC----CHHHHHHHHHHHHHH---H--CCCEEEEEEE Q ss_conf 0079987103----188889989999987---2--8988999856 Q gi|254780288|r 3 VVTVATWNVN----SIRARIHNLAAWIKE---N--NPDIICLQET 38 (281) Q Consensus 3 ~lrI~TwNin----glr~r~~~l~~~l~~---~--~pDIi~LQEv 38 (281) .|||+.-.++ -+.+.++++.+++++ + ++|+|++.|. T Consensus 9 ~~kia~~Q~~~~~~D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE~ 53 (281) T d1f89a_ 9 KIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPEC 53 (281) T ss_dssp CEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTT T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCC T ss_conf 733999957788889999999999999999834899979986886 No 15 >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} Probab=25.55 E-value=15 Score=14.18 Aligned_cols=25 Identities=12% Similarity=-0.061 Sum_probs=13.0 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCC Q ss_conf 7655332223201476000011014 Q gi|254780288|r 131 IKRFLRFASQRLELEEPLIFAGDYN 155 (281) Q Consensus 131 ~~~l~~~l~~~~~~~~~vIi~GDFN 155 (281) +.++.+.+.+....+.+++++|-.= T Consensus 71 ~~~~~~~l~~~~~~~i~iivGG~~~ 95 (137) T d1ccwa_ 71 CKGLRQKCDEAGLEGILLYVGGNIV 95 (137) T ss_dssp HTTHHHHHHHTTCTTCEEEEEESCS T ss_pred HHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 9999999987314898799947867 Done!