PSIBLAST alignment of GI: 254780288 and protein with PDB id: 1vyb
>gi|49259594|pdb|1VYB|A Chain A, Endonuclease Domain Of Human Line1 Orf2p Length = 238
>gi|49259595|pdb|1VYB|B Chain B, Endonuclease Domain Of Human Line1 Orf2p Length = 238
Score = 86.0 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 58/262 (22%), Positives = 97/262 (37%), Gaps = 32/262 (12%)
Query: 2 SVVTVATWNVNSIRARIHN--LAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIET 59
S +T+ T N+N + + I LA+WIK +P + C+QET ++ ++ +
Sbjct: 6 SHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQA 65
Query: 60 CGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPI 119
G++ GVAIL + T D + +I +I + L I N+Y P+
Sbjct: 66 NGKQKKAGVAILVSDKTDFKPT---KIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAP 122
Query: 120 TSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEV 179
K + + +L+ + GD+N D D
Sbjct: 123 RFIKQ-----------VLSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDT------ 165
Query: 180 RQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239
++ L D R H Y+F+ ++SK IDHI+ S S
Sbjct: 166 QELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYSK-----IDHIVGSKALLSKCKRT 220
Query: 240 RIDTKPRGWTKPSDHTPVIVSL 261
I T SDH+ + + L
Sbjct: 221 EIITNYL-----SDHSAIKLEL 237