PSIBLAST alignment of GI: 254780288 and protein with PDB id: 1vyb

>gi|49259594|pdb|1VYB|A Chain A, Endonuclease Domain Of Human Line1 Orf2p Length = 238
>gi|49259595|pdb|1VYB|B Chain B, Endonuclease Domain Of Human Line1 Orf2p Length = 238
 Score = 86.0 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 97/262 (37%), Gaps = 32/262 (12%)

Query: 2   SVVTVATWNVNSIRARIHN--LAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIET 59
           S +T+ T N+N + + I    LA+WIK  +P + C+QET    ++     ++      + 
Sbjct: 6   SHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQA 65

Query: 60  CGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPI 119
            G++   GVAIL   +     T       D +  +I    +I  + L I N+Y P+    
Sbjct: 66  NGKQKKAGVAILVSDKTDFKPT---KIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAP 122

Query: 120 TSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEV 179
              K              +  + +L+   +  GD+N      D         D       
Sbjct: 123 RFIKQ-----------VLSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDT------ 165

Query: 180 RQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239
           ++    L      D  R  H     Y+F+     ++SK     IDHI+ S    S     
Sbjct: 166 QELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYSK-----IDHIVGSKALLSKCKRT 220

Query: 240 RIDTKPRGWTKPSDHTPVIVSL 261
            I T        SDH+ + + L
Sbjct: 221 EIITNYL-----SDHSAIKLEL 237