PSIBLAST alignment of GI: 254780288 and protein with PDB id: 2v0r
>gi|152149537|pdb|2V0R|A Chain A, Crystal Structure Of A Hairpin Exchange Variant (Ltx) Of The Targeting Line-1 Retrotransposon Endonuclease Length = 240
>gi|152149538|pdb|2V0R|B Chain B, Crystal Structure Of A Hairpin Exchange Variant (Ltx) Of The Targeting Line-1 Retrotransposon Endonuclease Length = 240
Score = 82.9 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 57/262 (21%), Positives = 96/262 (36%), Gaps = 30/262 (11%)
Query: 2 SVVTVATWNVNSIRARIHN--LAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIET 59
S +T+ T N+N + + I LA+WIK +P + C+QET ++ ++ +
Sbjct: 6 SHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQA 65
Query: 60 CGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPI 119
G++ GVAIL + T D + +I +I + L I N+Y P+
Sbjct: 66 NGKQKKAGVAILVSDKTDFKPT---KIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAP 122
Query: 120 TSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEV 179
K + + +L+ + GD+N D D
Sbjct: 123 RFIKQ-----------VLSDLQRDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDT------ 165
Query: 180 RQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239
++ L D R H Y++ S++K IDHI+ S S
Sbjct: 166 QELNSALHQADLIDIYRTLHPKSTEYTYVRVRDGHVSQSK---IDHIVGSKALLSKCKRT 222
Query: 240 RIDTKPRGWTKPSDHTPVIVSL 261
I T SDH+ + + L
Sbjct: 223 EIITNYL-----SDHSAIKLEL 239