RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus str. psy62] (281 letters) >gnl|CDD|31052 COG0708, XthA, Exonuclease III [DNA replication, recombination, and repair]. Length = 261 Score = 290 bits (745), Expect = 2e-79 Identities = 109/263 (41%), Positives = 159/263 (60%), Gaps = 9/263 (3%) Query: 6 VATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNY-HIETCGQKS 64 +A+WNVN +RAR+ L W++E PD++CLQETK +D+ FP E L++L Y H+ GQK Sbjct: 3 IASWNVNGLRARLKKLLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNHGQKG 62 Query: 65 YNGVAILSKYQPIEIVTHLPG-DDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTK 123 Y+GVAILSK P ++ PG ++ D + R IEA F R+ NLY P+G+ I K Sbjct: 63 YSGVAILSKKPPDDVRRGFPGEEEDDEEGRVIEAEF----DGFRVINLYFPNGSSIGLEK 118 Query: 124 YDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNP---IIWENDACFTLEVR 180 +D K+ ++ + + L+ +P++ GD+NI P+ D NP + E ++ F E R Sbjct: 119 FDYKLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEER 178 Query: 181 QSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSAR 240 F++L N GF D R H Y++WDY A++ +N+G RID+I++SP L A Sbjct: 179 AWFRRLLNAGFVDTFRLFHPEPEKYTWWDYRANAARRNRGWRIDYILVSPALADRLKDAG 238 Query: 241 IDTKPRGWTKPSDHTPVIVSLDI 263 ID + RGW KPSDH PV V LD+ Sbjct: 239 IDREVRGWEKPSDHAPVWVELDL 261 >gnl|CDD|146159 pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12 and Nocturnin. Length = 255 Score = 140 bits (354), Expect = 5e-34 Identities = 66/273 (24%), Positives = 105/273 (38%), Gaps = 33/273 (12%) Query: 4 VTVATWNVNSIRARIHN-----LAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIE 58 + + TWNVN + A + L +K +PD+ICLQETK ++ L L Y Sbjct: 1 LKILTWNVNGLSAALKLLWARLLLELLKLEDPDVICLQETKLSPESLILLLLLLLGYVSP 60 Query: 59 T---------CGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIG 109 G GVAILSK +E++ + ++ + FI N ++ + Sbjct: 61 LTSSVYTGFGGGGGGKGGVAILSKEPLVEVILGIFSEN---EKDFIRRRILANGKSFVVV 117 Query: 110 NLYLPHGNPITSTKYDDKISWIKRFLRF-ASQRLELEEPLIFAGDYNIIPQPHDCYNPII 168 N +LP G D++++ + L F + R+ +P+I GD+N P D Sbjct: 118 NTHLPAG----GENLDERLAQLAELLDFLSDLRIPKSDPVILCGDFNARPDSWDSALLKS 173 Query: 169 WENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIML 228 F L R ++W Y S KN G R+D I++ Sbjct: 174 IGKSTLFLLLERD---------LVFDGFDELPIGFPPTWWSYRNSSEKKNTGSRLDRILV 224 Query: 229 SPEATSLLHSARIDTKPRGWTKPSDHTPVIVSL 261 S + + SDH PV+ +L Sbjct: 225 SGSLLRRVVILSLLLLVIF--TGSDHRPVLATL 255 >gnl|CDD|36508 KOG1294, KOG1294, KOG1294, Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]. Length = 335 Score = 65.0 bits (158), Expect = 2e-11 Identities = 60/278 (21%), Positives = 106/278 (38%), Gaps = 22/278 (7%) Query: 3 VVTVATWNVNSIRARIHNLAA-WIKENNPDIICLQETKTEDKNFPFE--TLQSLNYHIET 59 V+ + W++ + A I D+ CL ETK + P T + + + + Sbjct: 63 VLNICPWDIAGLEACEKFSGDPEISSELRDLQCLLETKCTIDSGPCSHPTEKGYTHSLLS 122 Query: 60 CGQKSYN--GVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPH-G 116 C K G SK++P++ H + R + + + N Y+P+ G Sbjct: 123 CASKKDGYSGEIDYSKFKPLK--VHYGFGAMGSDHRPVGRVIIAEFEIFILINTYVPNIG 180 Query: 117 NPITSTKYDDKISWIKRFLRFASQRLE---LEEPLIFAGDYNIIPQPHDCYNPII-WEND 172 + + Y W K ++ L+ P++ GD N+ + D P++ + Sbjct: 181 GGLVNLVYRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHEEIDPSKPLVSPAGN 240 Query: 173 AC----FTLEVRQSFQK--LQNMGFTDAIRATH-DTHHLYSFWDYYADSWSKNKGIRIDH 225 FT E R SF L+ D R H D Y+FW Y + + G R D+ Sbjct: 241 TLSNAGFTPEERDSFFAELLEKGPLIDTYRELHKDQKKAYTFWKYMPNGRQRGHGERCDY 300 Query: 226 IMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDI 263 I++S + I ++P SDH P+ + + Sbjct: 301 ILVSKPGPNNGRRFYICSRPIH---GSDHCPITLEFFL 335 >gnl|CDD|33370 COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]. Length = 259 Score = 52.7 bits (126), Expect = 1e-07 Identities = 50/292 (17%), Positives = 87/292 (29%), Gaps = 76/292 (26%) Query: 6 VATWNVNS------IRARIHNLAAWIKENNPDIICLQE-----------------TKTED 42 V T+N++ R + +A I+E DI+ LQE Sbjct: 12 VLTYNIHKGFGAFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRL 71 Query: 43 KNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTH-LPGDDLDVQARFIEATFTI 101 P+ + + GQ +G AILS+ ++ LP + A + Sbjct: 72 GLAPYWWSGAAFGAVYGEGQ---HGNAILSRLPIRDVENLALPDPTGLEPRGALLAEIEL 128 Query: 102 NT-QTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLE------LEEPLIFAGDY 154 + LR+ N +L + + L P + GD+ Sbjct: 129 PGGKPLRVINAHL---------------GLSEESRLRQAAALLALAGLPALNPTVLMGDF 173 Query: 155 NIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADS 214 N P + + A L + T A + Sbjct: 174 NNEPGSAE------YRLAARSPLNAQ--------AALTGAFAPAV---------GRTIRT 210 Query: 215 WSKNKG-IRIDHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIPE 265 + N +R+D I +S E + S + T SDH P++ L + + Sbjct: 211 FPSNTPLLRLDRIFVSKEL--AIRSVHVLTDR-LARVASDHLPLLAELRLKD 259 >gnl|CDD|37967 KOG2756, KOG2756, KOG2756, Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]. Length = 349 Score = 41.2 bits (96), Expect = 4e-04 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Query: 2 SVVTVATWNV-----NSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYH 56 S+ ++ TWN+ N++ R+ + ++ +PD+I LQE + + S NY Sbjct: 98 SMFSLITWNIDGLDLNNLSERMRAVCHYLALYSPDVIFLQEVIPPYYS-YLKKRSS-NYE 155 Query: 57 IETCGQKSYNGVAILSK 73 I T ++ Y +L K Sbjct: 156 IITGHEEGYFTAIMLKK 172 >gnl|CDD|32837 COG3021, COG3021, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 309 Score = 41.1 bits (96), Expect = 4e-04 Identities = 40/258 (15%), Positives = 73/258 (28%), Gaps = 41/258 (15%) Query: 2 SVVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCG 61 ++ NV A + L + I++ + D + E I Sbjct: 87 RLLWNLQKNVRFDNASVAKLLSLIQQLDADAVTTPEGVQLWTAKVGALAAQYPAFILCQH 146 Query: 62 QKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITS 121 +AILS+ + P L ++ A + L + L+ P+ + Sbjct: 147 PTGVFTLAILSRRPCCPLTEAEPWLRLP-KSALATAYPLPDGTELTVVALH-AVNFPVGT 204 Query: 122 TKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQ 181 ++ + + P+I AGD+N P W A ++ Sbjct: 205 DPQRAQLLELGDQIA------GHSGPVILAGDFNAPP----------WSRTA------KR 242 Query: 182 SFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARI 241 A F D + G+ IDH+ + Sbjct: 243 MAALGGLRAAPRAGLW------EVRFTP---DERRRAFGLPIDHVFYR--------GLTV 285 Query: 242 DTKPRGWTKPSDHTPVIV 259 R + SDH P++V Sbjct: 286 MKARRLPDRGSDHRPLLV 303 >gnl|CDD|37549 KOG2338, KOG2338, KOG2338, Transcriptional effector CCR4-related protein [Transcription]. Length = 495 Score = 29.6 bits (66), Expect = 0.95 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Query: 16 ARIHNLAAWIKENNPDIICLQET-KTEDKNFPFETLQSLNY---HIETCGQKSYNGVAIL 71 R NL +K +PD++CLQE + F L L Y G K+ +GVAIL Sbjct: 149 RRSQNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFFKRRTGTKT-HGVAIL 207 Query: 72 SKYQPIEIVTHLP 84 ++V H Sbjct: 208 WHSAKFKLVNHSE 220 >gnl|CDD|35839 KOG0620, KOG0620, KOG0620, Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]. Length = 361 Score = 28.8 bits (64), Expect = 1.8 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 13 SIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNY 55 S R L I N DI+CLQE +F L++ Y Sbjct: 47 SWEYRRQLLLEEILNYNADILCLQEVDRYH-DFFSPELEASGY 88 >gnl|CDD|39037 KOG3833, KOG3833, KOG3833, Uncharacterized conserved protein, contains RtcB domain [Function unknown]. Length = 505 Score = 28.0 bits (62), Expect = 2.7 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%) Query: 169 WENDACFTLEVRQSFQKLQNMGFTDA-IRATHDTHH 203 W N + T RQ+F K+ N D + +D H Sbjct: 318 WVNRSSMTFLTRQAFAKVFNTSPDDLDLHVIYDVSH 353 >gnl|CDD|32521 COG2374, COG2374, Predicted extracellular nuclease [General function prediction only]. Length = 798 Score = 28.1 bits (62), Expect = 3.0 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 18/97 (18%) Query: 184 QKLQNMGFTD--AIRATHDTHHLYSFWDYY---------ADSWSKNKGIRIDHIMLSPEA 232 Q L+ G+ + A + Y F A ++ G HI + E Sbjct: 693 QALEGAGYMNLAARFHDAGDRYSYVFNGQSGTLDHALASASLAAQVSGATEWHIN-ADEP 751 Query: 233 TSLLHSARI------DTKPRGWTKPSDHTPVIVSLDI 263 +L ++ K + SDH PV+V L++ Sbjct: 752 DALDYNLEFKGQNVSLYKTTNPFRASDHDPVVVGLNL 788 >gnl|CDD|38922 KOG3718, KOG3718, KOG3718, Carnitine O-acyltransferase CROT [Lipid transport and metabolism]. Length = 609 Score = 26.5 bits (58), Expect = 8.9 Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 16/55 (29%) Query: 169 WENDACFTLEVRQSFQKLQNMGFTDAI--------------RATHDTHHLYSFWD 209 W + A L +R MG + A HH S+WD Sbjct: 85 WYDYA--YLLIRMPLLPYVLMGAPSQLFMVGVPETDGYQLESAARHIHHSLSYWD 137 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.134 0.419 Gapped Lambda K H 0.267 0.0594 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,583,030 Number of extensions: 185233 Number of successful extensions: 476 Number of sequences better than 10.0: 1 Number of HSP's gapped: 461 Number of HSP's successfully gapped: 21 Length of query: 281 Length of database: 6,263,737 Length adjustment: 93 Effective length of query: 188 Effective length of database: 4,254,100 Effective search space: 799770800 Effective search space used: 799770800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.0 bits)