RPSBLAST alignment of GI: 254780288 and protein with PDBid: 1ako
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Length = 268
Score = 166 bits (420), Expect = 5e-42
Identities = 77/264 (29%), Positives = 118/264 (44%), Gaps = 8/264 (3%)
Query: 6 VATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSY 65
++N+N +RAR H L A ++++ PD+I LQETK D FP E + L Y++ GQK +
Sbjct: 3 FVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGH 62
Query: 66 NGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYD 125
GVA+L+K PI + PGDD + Q R I A + + N Y P G
Sbjct: 63 YGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKF 122
Query: 126 DK-ISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYN------PIIWENDACFTLE 178
+ + + L+ + P++ GD NI P D + F E
Sbjct: 123 PAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPE 182
Query: 179 VRQSFQKLQNMGFTDAIRATHDTHHLYS-FWDYYADSWSKNKGIRIDHIMLSPEATSLLH 237
R+ +L + G D R + ++DY + + N+G+RID ++ S
Sbjct: 183 EREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCV 242
Query: 238 SARIDTKPRGWTKPSDHTPVIVSL 261
ID + R KPSDH PV +
Sbjct: 243 ETGIDYEIRSMEKPSDHAPVWATF 266