RPSBLAST alignment of GI: 254780288 and protein with PDBid: 1ako

>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Length = 268
 Score =  166 bits (420), Expect = 5e-42
 Identities = 77/264 (29%), Positives = 118/264 (44%), Gaps = 8/264 (3%)

Query: 6   VATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSY 65
             ++N+N +RAR H L A ++++ PD+I LQETK  D  FP E +  L Y++   GQK +
Sbjct: 3   FVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGH 62

Query: 66  NGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYD 125
            GVA+L+K  PI +    PGDD + Q R I A        + + N Y P G         
Sbjct: 63  YGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKF 122

Query: 126 DK-ISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYN------PIIWENDACFTLE 178
                + +    +    L+ + P++  GD NI P   D           +      F  E
Sbjct: 123 PAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPE 182

Query: 179 VRQSFQKLQNMGFTDAIRATHDTHHLYS-FWDYYADSWSKNKGIRIDHIMLSPEATSLLH 237
            R+   +L + G  D  R  +        ++DY +  +  N+G+RID ++ S        
Sbjct: 183 EREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCV 242

Query: 238 SARIDTKPRGWTKPSDHTPVIVSL 261
              ID + R   KPSDH PV  + 
Sbjct: 243 ETGIDYEIRSMEKPSDHAPVWATF 266