RPSBLAST alignment of GI: 254780288 and protein with PDBid: 1vyb

>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Length = 238

 Score =  105 bits (261), Expect = 1e-23
 Identities = 56/262 (21%), Positives = 92/262 (35%), Gaps = 32/262 (12%)

Query: 2   SVVTVATWNVNSIRARI--HNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIET 59
           S +T+ T N+N + + I  H LA+WIK  +P + C+QET    ++     ++      + 
Sbjct: 6   SHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQA 65

Query: 60  CGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPI 119
            G++   GVAIL   +     T       D +  +I    +I  + L I N+Y P+    
Sbjct: 66  NGKQKKAGVAILVSDKTDFKPT---KIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAP 122

Query: 120 TSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEV 179
              K                         +  GD+N      D         D       
Sbjct: 123 RFIKQVLSDLQRDLDSHT-----------LIMGDFNTPLSTLDRSTRQKVNKD------T 165

Query: 180 RQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239
           ++    L      D  R  H     Y+F+     ++S     +IDHI+ S    S     
Sbjct: 166 QELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYS-----KIDHIVGSKALLSKCKRT 220

Query: 240 RIDTKPRGWTKPSDHTPVIVSL 261
            I          SDH+ + + L
Sbjct: 221 EII-----TNYLSDHSAIKLEL 237