RPSBLAST alignment of GI: 254780288 and protein with PDBid: 2f1n

>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Length = 262
 Score =  109 bits (273), Expect = 5e-25
 Identities = 36/292 (12%), Positives = 65/292 (22%), Gaps = 74/292 (25%)

Query: 1   MSVVTVATWNVNSIRARIHN------LAAWIKENNPDIICLQETKTEDKNFPFE------ 48
           ++   VATWN+    A   +            EN  DI+ +QE  +              
Sbjct: 13  LTDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPS 72

Query: 49  -----------------TLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQ 91
                              Q   Y            +A++S  +  E+    P       
Sbjct: 73  PGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLSPVRQGGRP 132

Query: 92  ARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFA 151
              I                +        +    +++     F R +   +      +  
Sbjct: 133 LLGIR------IGNDAFFTAHAIAMRNNDAPALVEEVYN---FFRDSRDPVHQALNWMIL 183

Query: 152 GDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYY 211
           GD+N  P   +                                           +     
Sbjct: 184 GDFNREPADLEMN----------------------------------LTVPVRRASEIIS 209

Query: 212 ADSWSKNKGIRIDHIMLSPEATSLLH--SARIDTKPRGWTKPSDHTPVIVSL 261
             + ++     +D+ +             A I    R     SDH PV VS 
Sbjct: 210 PAAATQTSQRTLDYAVAGNSVAFRPSPLQAGIVYGARRTQISSDHFPVGVSR 261