RPSBLAST alignment of GI: 254780288 and protein with PDBid: 3ngq
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Length = 398
Score = 86.6 bits (213), Expect = 6e-18
Identities = 42/360 (11%), Positives = 82/360 (22%), Gaps = 90/360 (25%)
Query: 4 VTVATWNV------------------NSIRARIHNLAAWIKENNPDIICLQE-TKTEDKN 44
TV +NV + R + I + DII LQE +
Sbjct: 32 FTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFT 91
Query: 45 FPFETLQSLNYH-----------IETCGQKSYNGVAILSKYQPIEIVTH----------- 82
L+ Y + +K +G AI K + +V
Sbjct: 92 LFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMA 151
Query: 83 LPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKI-----------SWI 131
+ R + L + G + +
Sbjct: 152 NSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYS 211
Query: 132 KRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGF 191
L + + ++ D + + +L + L N G
Sbjct: 212 DVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGV 271
Query: 192 TDAIR----------------------ATHDTHHLYSFWDYYAD------SWSKNKGIRI 223
D + + H + Y + +++ + I
Sbjct: 272 ADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYTNYTFDFKGVI 331
Query: 224 DHIMLSPEATSLLHSARIDTK----------PRGWTKPSDHTPVIVSLDIPEPRKKQQDS 273
D+I S ++ PSDH ++ L++ P +
Sbjct: 332 DYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELHPPLLPLVNG 391