HHsearch alignment for GI: 254780289 and conserved domain: PRK05602
>PRK05602 RNA polymerase sigma factor; Reviewed.
Probab=98.94 E-value=2.2e-07 Score=77.22 Aligned_cols=168 Identities=17% Similarity=0.265 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHH
Q ss_conf 99999987653321124689998755578999887522356777887544367999988743854573120102898999
Q gi|254780289|r 427 FRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQ 506 (682)
Q Consensus 427 lK~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~ 506 (682)
T Consensus 7 D~eLi~~~~~Gd~~---Af~~L~~~y~~~l~~~~~~~~~d~~~AeDivQe~fl~~~~~~~~~~~~~~-~~~~---wL~~i 79 (186)
T PRK05602 7 DAELMARVGAGDAS---AFRVLVARKLPRLLALATRMLGDPAEAEDVAQETFLRIWNQAPSWRPGEA-RFDT---WLHRV 79 (186)
T ss_pred HHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH-HHHH---HHHHH
T ss_conf 99999999928899---99999999999999999999299999999999999999987222588620-3999---99999
Q ss_pred HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999972287046142058898999999999877608899978999870999899999998608987553635889986
Q gi|254780289|r 507 AITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTS 586 (682)
Q Consensus 507 ~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~ 586 (682)
T Consensus 80 a~n~~~-----------------d~~Rk-~~-----------------------------------~~~~~~~------- 99 (186)
T PRK05602 80 VLNLCY-----------------DRLRR-RR-----------------------------------EVPVEDA------- 99 (186)
T ss_pred HHHHHH-----------------HHHHH-HH-----------------------------------CCCCCCC-------
T ss_conf 999999-----------------99987-14-----------------------------------1573222-------
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 04756238988998999999999999999973299889999999818798674688999899667899999999999998
Q gi|254780289|r 587 HLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRK 666 (682)
Q Consensus 587 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~ 666 (682)
T Consensus 100 --~~~-~~-~~~~~~~~~~~~e~~~~l~~al~~Lp~~~R~v~~L~~----~~g~s~~EIA~~l~is~~tVk~~l~RAr~~ 171 (186)
T PRK05602 100 --PEV-PD-PAPGPDERLEARQRARRVEQALAALPERQREAIVLQY----YQGLSNIEAARVMGLSVDALESLLARARRA 171 (186)
T ss_pred --CCC-CC-CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf --000-34-6898778999999999999999759987889999998----638999999999893999999999999999
Q ss_pred HCC
Q ss_conf 329
Q gi|254780289|r 667 LKH 669 (682)
Q Consensus 667 l~~ 669 (682)
T Consensus 172 Lr~ 174 (186)
T PRK05602 172 LRA 174 (186)
T ss_pred HHH
T ss_conf 999