HHsearch alignment for GI: 254780289 and conserved domain: PRK05949
>PRK05949 RNA polymerase sigma factor; Validated.
Probab=94.69 E-value=0.41 Score=27.78 Aligned_cols=39 Identities=36% Similarity=0.525 Sum_probs=35.0
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 345777728999999856976889788999999999889
Q gi|254780289|r 112 SADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGR 150 (682)
Q Consensus 112 ~e~~rtdDPVRMYLREMG~V~LLTREgEIeIAKRIE~G~ 150 (682)
T Consensus 11 ~~~~~~~D~~~~YL~ei~~~pLLt~eeE~~La~~iq~~~ 49 (327)
T PRK05949 11 TQPTFTADMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMM 49 (327)
T ss_pred CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999899881999999827866889999999999999999