HHsearch alignment for GI: 254780289 and conserved domain: PRK06759
>PRK06759 RNA polymerase factor sigma-70; Validated.
Probab=99.70 E-value=1.8e-15 Score=141.11 Aligned_cols=149 Identities=22% Similarity=0.271 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 68999875557899988752235677788754436799998874385457312010289899999999972287046142
Q gi|254780289|r 444 AKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPV 523 (682)
Q Consensus 444 AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i~~~~~~~~~~~r~~~ 523 (682)
T Consensus 5 sFee~~~~Y~pmI~~~lkkl~i~-~d~dd~~Q~g~i~Lw~a~~~yd~~kg-~fstya~~~ir~~~ld~lrKe~~~----- 77 (154)
T PRK06759 5 TFTEAVVLYEGLIVNQIKKLGIY-QDYEEYYQCGLIGLWHAYERYDEKKG-SFPAYAVVTVRGYILERLKKEFAV----- 77 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHCCCC-----
T ss_conf 59999999878999999993673-33899999999999999997694347-669999999999999999863143-----
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH
Q ss_conf 05889899999999987760889997899987099989999999860898755363588998604756238988998999
Q gi|254780289|r 524 HMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDS 603 (682)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~d~~~~~~~~~ 603 (682)
T Consensus 78 --------------------------~e----------------------~~--~~~~~-----------------~ed~ 90 (154)
T PRK06759 78 --------------------------QE----------------------KC--VCVGE-----------------YEDH 90 (154)
T ss_pred --------------------------CC----------------------CC--CCCCC-----------------CHHH
T ss_conf --------------------------34----------------------33--35565-----------------2255
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCH
Q ss_conf 9999999999999732998899999998187986746889998996678999999999999983296
Q gi|254780289|r 604 AIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHP 670 (682)
Q Consensus 604 ~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~ 670 (682)
T Consensus 91 ~~~~d~~~~l~~~l~~L~~re~~ii~~~~----~~g~t~~EIA~~~gis~~~Vk~~~r~Al~KLR~~ 153 (154)
T PRK06759 91 FHFEDVEMKVKDFMSVLDEKEKYIIFERF----FVGKTMGEIALETEMTYYQVRWIYRQALEKMRNS 153 (154)
T ss_pred HHHCHHHHHHHHHHHHCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 51011889999999849999999999999----9699899999998989999999999999998733