HHsearch alignment for GI: 254780289 and conserved domain: PRK07037
>PRK07037 extracytoplasmic-function sigma-70 factor; Validated.
Probab=98.44 E-value=2.6e-05 Score=60.92 Aligned_cols=159 Identities=18% Similarity=0.244 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 24689998755578999887522356777887544367999988743854573120102898999999999722870461
Q gi|254780289|r 442 SIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRI 521 (682)
Q Consensus 442 ~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i~~~~~~~~~~~r~ 521 (682)
T Consensus 11 e~al~elf~~~~~~L~~~a~r~~~~~~~AEDivQe~Flkl~~~~~~~~~~~~------~a-wL~~iarN~~id~------ 77 (183)
T PRK07037 11 DGALLDVFVDNRSMLVKIARGIVGCASRAEDVVQDAFVKLVEAPNQDAVKQP------VA-YLFQMVRNLAIDH------ 77 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCH------HH-HHHHHHHHHHHHH------
T ss_conf 8999999999999999999999799988999999999999974543441369------99-9999999999999------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCHH
Q ss_conf 42058898999999999877608899978999870999899999998608987553635889986047562389889989
Q gi|254780289|r 522 PVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPL 601 (682)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~d~~~~~~~ 601 (682)
T Consensus 78 ----------lRr~~~~--~~-------------------------------~~-----~~~~~~--~~-~~~-~~~~pe 105 (183)
T PRK07037 78 ----------CRRQSLE--NK-------------------------------YH-----GDEDDG--LD-VPS-PEASPE 105 (183)
T ss_pred ----------HHHHHHH--HH-------------------------------CC-----CCHHHH--CC-CCC-CCCCHH
T ss_conf ----------9977766--50-------------------------------13-----424442--12-678-899989
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999973299889999999818798674688999899667899999999999998329
Q gi|254780289|r 602 DSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH 669 (682)
Q Consensus 602 ~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~ 669 (682)
T Consensus 106 ~~~~~~e~~~~l~~ai~~LP~~~R~v~~L~~----~eg~s~~EIAe~LgiS~~tVk~~l~rAl~~LR~ 169 (183)
T PRK07037 106 AALINRDTLRHVADALDELPARTRAAFEMVR----LRGETLQDIARELNVSQTLVNFMIRDALRHCRK 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999819999999989898----739899999999892999999999999999999