HHsearch alignment for GI: 254780289 and conserved domain: PRK07122
>PRK07122 RNA polymerase sigma factor SigF; Reviewed.
Probab=100.00 E-value=0 Score=478.33 Aligned_cols=236 Identities=24% Similarity=0.382 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHH
Q ss_conf 88999999876533211246899987555789998875223567778875443679999887438545731201028989
Q gi|254780289|r 425 SEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWV 504 (682)
Q Consensus 425 ~ElK~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i 504 (682)
T Consensus 21 ~~~~~~~~~~~~~~~~~~~aR~~lI~~nLrLV~~iA~ry~~rGl~~~DLiQeG~iGLi~A~ekFDp~rG~rFsTYA~~wI 100 (263)
T PRK07122 21 PEMFRELAGLPAGSPEFQRQRDRIVTRCLPLADHIARRFDGRGEPRDDLVQVARVGLVNAVNRFDVEAGSDFVSFAVPTI 100 (263)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99999998568999899999999999909999999987216898888999999999999999719877998599999999
Q ss_pred HHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHH--HCCCCCCCCCCCC
Q ss_conf 99999999722870461420588989999999998776088999789998709998999999986--0898755363588
Q gi|254780289|r 505 KQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKI--TKEPISLETPIGD 582 (682)
Q Consensus 505 ~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~sl~~~~~~ 582 (682)
T Consensus 101 rgaI~r~lr~~~~~IRlP~~~~~~~~ki~~~~~~l~~~~gr~Pt~~EiA~~lg~~~~~v~~~l~~~~~~~~~SlD~~~~~ 180 (263)
T PRK07122 101 MGEVRRHFRDNSWSVKVPRRLKELHLRLGRATAELSQRLGRAPTASELAAELGMDREEVVEGLVAGSSYNTLSIDSGGGS 180 (263)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99999999982875465799999989999999999998688999999998969399999999987335898778788888
Q ss_pred CCCC--EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9986--04756238988998999999999999999973299889999999818798674688999899667899999999
Q gi|254780289|r 583 EDTS--HLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIE 660 (682)
Q Consensus 583 ~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~ 660 (682)
T Consensus 181 ~~~~~~~l~d~~~d~~-----~~~e~~~~~~~L~~~l~~L~eREr~Vi~lry~----e~~Tl~EIa~~lGiSreRVrQIe 251 (263)
T PRK07122 181 GDDDARAIADTLGDVD-----AGLDHIENREALRPLLAALPERERTVLVLRFF----ESMTQTQIAERVGISQMHVSRLL 251 (263)
T ss_pred CCCCCCHHHHHCCCCC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC----CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 8865203546416976-----42899999999999997599999999999956----99989999999897999999999
Q ss_pred HHHHHHHCC
Q ss_conf 999998329
Q gi|254780289|r 661 AKAIRKLKH 669 (682)
Q Consensus 661 ~~a~~~l~~ 669 (682)
T Consensus 252 ~~AL~KLR~ 260 (263)
T PRK07122 252 AKSLARLRD 260 (263)
T ss_pred HHHHHHHHH
T ss_conf 999999999