HHsearch alignment for GI: 254780289 and conserved domain: PRK07500
>PRK07500 rpoH2 RNA polymerase factor sigma-32; Reviewed.
Probab=100.00 E-value=0 Score=478.08 Aligned_cols=236 Identities=32% Similarity=0.483 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 24689998755578999887522356777887544367999988743854573120102898999999999722870461
Q gi|254780289|r 442 SIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRI 521 (682)
Q Consensus 442 ~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i~~~~~~~~~~~r~ 521 (682)
T Consensus 39 ~~Ar~~LI~~NLRLV~~iA~ry~~~g~~l~DLIQeG~iGLi~AvekFDp~rG~rFSTYA~wWIr~aI~r~i~~~~~~iR~ 118 (289)
T PRK07500 39 EDALHRIISAHMRLVISMAGKFRRFGLPMNDLIQEGYVGLLEAAARFDPDRDVRFSTYATWWIRASIQDYILRNWSIVRG 118 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999985899999998745899897899998699999999736988899721101999999998877736651000
Q ss_pred CCHHHHHH--HHHHHHHHHH---HHHCCCCCCHHHHHHHCCCCHHHHHHHH-HHHCCCCCCCCCCCCCCCCE--EEEEEC
Q ss_conf 42058898--9999999998---7760889997899987099989999999-86089875536358899860--475623
Q gi|254780289|r 522 PVHMRDKI--HKVVRTARRM---SNKIKREPTPEEIAKKLAMPVEGVRKVL-KITKEPISLETPIGDEDTSH--LGDFIE 593 (682)
Q Consensus 522 ~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~sl~~~~~~~~~~~--~~~~~~ 593 (682)
T Consensus 119 p~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~eiA~~l~~~~~~v~~~~~~~~~~~~SL~~~~~~d~~~~~~~~d~l~ 198 (289)
T PRK07500 119 GTSSAQKALFFNLRRLRARLAQSDEQLTKHEIHREIATALGVSLSDVEMMDARLSGPDSSLNAPQSEEDEGRSERMDFLV 198 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHC
T ss_conf 03887899999999999999986154565543999998809999999999999737986666806787777401555404
Q ss_pred CCCCCCHHHHHH----HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 898899899999----9999999999973299889999999818798674688999899667899999999999998329
Q gi|254780289|r 594 DKNAVSPLDSAI----QANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH 669 (682)
Q Consensus 594 d~~~~~~~~~~~----~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~ 669 (682)
T Consensus 199 d~~-~~p~~~~e~~~~~~~~~~~L~~~l~~L~eREr~Ii~~r~~~--~e~~TL~EIg~~lgvSreRVRQIe~kAL~KLR~ 275 (289)
T PRK07500 199 DDS-PLPDEIVESSIDGERRRQWLTQALQTLNERELFIIRERRLR--EDGATLEALGEELGISKERVRQIEARALEKLRR 275 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 688-98389999999999999999999854999999999997668--998589999999797999999999999999999
Q ss_pred H--HHHHHHHHHH
Q ss_conf 6--7778756651
Q gi|254780289|r 670 P--SRSKKLRSFL 680 (682)
Q Consensus 670 ~--~~~~~l~~~~ 680 (682)
T Consensus 276 ~L~~~~~e~~~~~ 288 (289)
T PRK07500 276 ALLSQSPEAAYFL 288 (289)
T ss_pred HHHHHCHHHHHHH
T ss_conf 9998477988863