HHsearch alignment for GI: 254780289 and conserved domain: PRK09637
>PRK09637 RNA polymerase sigma factor SigZ; Provisional.
Probab=98.46 E-value=1.6e-05 Score=62.57 Aligned_cols=149 Identities=13% Similarity=0.128 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEECCCHH
Q ss_conf 99987555789998875223567778875443679999887438545731201028989999999997228704614205
Q gi|254780289|r 446 KEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHM 525 (682)
Q Consensus 446 ~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i~~~~~~~~~~~r~~~~~ 525 (682)
T Consensus 4 E~Ly~~y~~~l~~~~~~~~~d~~~AEDivQe~flk~~~~~~~~~~~~--~~~~---WL~~IarN~~i-d~~R-------- 69 (181)
T PRK09637 4 ESIWSEYKAQLKAFLHSRVSNEADVDDLLQEVLIKTHSNLHSLKDGS--SIKS---WLYQIANNTII-DFYR-------- 69 (181)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC--CHHH---HHHHHHHHHHH-HHHH--------
T ss_conf 99999999999999999959999999999999999998522058823--4999---99999999999-9998--------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHH
Q ss_conf 88989999999998776088999789998709998999999986089875536358899860475623898899899999
Q gi|254780289|r 526 RDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDSAI 605 (682)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 605 (682)
T Consensus 70 --------k~--------~r~~~~---------~-----------------~~~~~~~---------------~~~~~~~ 92 (181)
T PRK09637 70 --------KK--------NRSEEL---------P-----------------DDLLFED---------------EEREENA 92 (181)
T ss_pred --------HH--------CCCCCC---------C-----------------HHHCCCC---------------CCCCHHH
T ss_conf --------61--------555677---------4-----------------2221467---------------9832249
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999973299889999999818798674688999899667899999999999998329
Q gi|254780289|r 606 QANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH 669 (682)
Q Consensus 606 ~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~ 669 (682)
T Consensus 93 ~~e~~~~l~~~l~~Lp~~~R~v~~L~~----~eg~s~~EIA~~L~is~~tVksrl~RAr~~Lr~ 152 (181)
T PRK09637 93 KKELAPCLRPFIDALPEKYAEALRLTE----LEGLSQKEIAEKLGLSLSGAKSRVQRGRVKLKE 152 (181)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999769999989979998----859999999999894999999999999999999