HHsearch alignment for GI: 254780289 and conserved domain: PRK09640

>PRK09640 RNA polymerase sigma factor SigX; Reviewed.
Probab=98.83  E-value=7.2e-07  Score=73.17  Aligned_cols=177  Identities=18%  Similarity=0.287  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHH
Q ss_conf             99999876533211246899987555789998875223567778875443679999887438545731201028989999
Q gi|254780289|r  428 RHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQA  507 (682)
Q Consensus       428 K~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~  507 (682)
T Consensus        11 ~eLv~~~~~g~~gD~~AF~~L~~~y~~~v~~~~~~~~~~~~dAEDl~Qe~flk~~~~l~~~~~~--~~f~---~WL~~Ia   85 (188)
T PRK09640         11 EELVARVHVELFHVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFEGK--SKFK---TWLYSIT   85 (188)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC--CCHH---HHHHHHH
T ss_conf             9999999827963899999999999999999999990999999999999999999988765898--8789---9999999


Q ss_pred             HHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCE
Q ss_conf             99999722870461420588989999999998776088999789998709998999999986089875536358899860
Q gi|254780289|r  508 ITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSH  587 (682)
Q Consensus       508 i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~  587 (682)
T Consensus        86 ~N~~~d-----------------~~Rk~~--------r~~~~---------------------~~~~~~~~-~~~-----  113 (188)
T PRK09640         86 YNECIT-----------------QYRKER--------RKRRL---------------------MDALSLDP-LEE-----  113 (188)
T ss_pred             HHHHHH-----------------HHHHHC--------CCCCC---------------------CCCCCCCC-CCC-----
T ss_conf             999999-----------------999861--------54555---------------------43000244-456-----


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             47562389889989999999999999999732998899999998187986746889998996678999999999999983
Q gi|254780289|r  588 LGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKL  667 (682)
Q Consensus       588 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l  667 (682)
T Consensus       114 -----------~~~~~~~~~e~~~~l~~~l~~L~~~~R~vl~L~~----~~~ls~~EIA~~l~is~~tVksrl~RAr~~L  178 (188)
T PRK09640        114 -----------ASEEKAPKPEERGGLDRWLVHVNPIDREILVLRF----VAELEFQEIADIMHMGLSATKMRYKRALDKL  178 (188)
T ss_pred             -----------CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             -----------8631002489999999999848999999999999----9299999999998929999999999999999


Q ss_pred             CCHHHHHHHHHHHC
Q ss_conf             29677787566517
Q gi|254780289|r  668 KHPSRSKKLRSFLD  681 (682)
Q Consensus       668 ~~~~~~~~l~~~~~  681 (682)
T Consensus       179 r-----~~L~~~~e  187 (188)
T PRK09640        179 R-----EKFAGLAE  187 (188)
T ss_pred             H-----HHHHCCCC
T ss_conf             9-----98645146