HHsearch alignment for GI: 254780289 and conserved domain: PRK09640
>PRK09640 RNA polymerase sigma factor SigX; Reviewed.
Probab=98.83 E-value=7.2e-07 Score=73.17 Aligned_cols=177 Identities=18% Similarity=0.287 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHH
Q ss_conf 99999876533211246899987555789998875223567778875443679999887438545731201028989999
Q gi|254780289|r 428 RHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQA 507 (682)
Q Consensus 428 K~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~ 507 (682)
T Consensus 11 ~eLv~~~~~g~~gD~~AF~~L~~~y~~~v~~~~~~~~~~~~dAEDl~Qe~flk~~~~l~~~~~~--~~f~---~WL~~Ia 85 (188)
T PRK09640 11 EELVARVHVELFHVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFEGK--SKFK---TWLYSIT 85 (188)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC--CCHH---HHHHHHH
T ss_conf 9999999827963899999999999999999999990999999999999999999988765898--8789---9999999
Q ss_pred HHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCE
Q ss_conf 99999722870461420588989999999998776088999789998709998999999986089875536358899860
Q gi|254780289|r 508 ITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSH 587 (682)
Q Consensus 508 i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~ 587 (682)
T Consensus 86 ~N~~~d-----------------~~Rk~~--------r~~~~---------------------~~~~~~~~-~~~----- 113 (188)
T PRK09640 86 YNECIT-----------------QYRKER--------RKRRL---------------------MDALSLDP-LEE----- 113 (188)
T ss_pred HHHHHH-----------------HHHHHC--------CCCCC---------------------CCCCCCCC-CCC-----
T ss_conf 999999-----------------999861--------54555---------------------43000244-456-----
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 47562389889989999999999999999732998899999998187986746889998996678999999999999983
Q gi|254780289|r 588 LGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKL 667 (682)
Q Consensus 588 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l 667 (682)
T Consensus 114 -----------~~~~~~~~~e~~~~l~~~l~~L~~~~R~vl~L~~----~~~ls~~EIA~~l~is~~tVksrl~RAr~~L 178 (188)
T PRK09640 114 -----------ASEEKAPKPEERGGLDRWLVHVNPIDREILVLRF----VAELEFQEIADIMHMGLSATKMRYKRALDKL 178 (188)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf -----------8631002489999999999848999999999999----9299999999998929999999999999999
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 29677787566517
Q gi|254780289|r 668 KHPSRSKKLRSFLD 681 (682)
Q Consensus 668 ~~~~~~~~l~~~~~ 681 (682)
T Consensus 179 r-----~~L~~~~e 187 (188)
T PRK09640 179 R-----EKFAGLAE 187 (188)
T ss_pred H-----HHHHCCCC
T ss_conf 9-----98645146