HHsearch alignment for GI: 254780289 and conserved domain: PRK09641

>PRK09641 RNA polymerase sigma factor SigW; Provisional.
Probab=99.18  E-value=7.5e-09  Score=88.84  Aligned_cols=180  Identities=16%  Similarity=0.246  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHH
Q ss_conf             88999999876533211246899987555789998875223567778875443679999887438545731201028989
Q gi|254780289|r  425 SEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWV  504 (682)
Q Consensus       425 ~ElK~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i  504 (682)
T Consensus         3 ~~i~~Li~~~~~GD~---~Af~~L~~~y~~~l~~~~~~~~~~~~~AeD~vQe~flk~~~~~~~~~~~~~--~~~---WL~   74 (187)
T PRK09641          3 TLIKKRIKQVKKGDQ---NAFADIVDLYKDKIYQLCYRMLGNRHEAEDIAQEAFIRAYVNIDSFDINRK--FST---WLY   74 (187)
T ss_pred             HHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC--HHH---HHH
T ss_conf             899999999993889---999999999999999999999099999999999999999984612574134--999---999


Q ss_pred             HHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             99999999722870461420588989999999998776088999789998709998999999986089875536358899
Q gi|254780289|r  505 KQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDED  584 (682)
Q Consensus       505 ~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~  584 (682)
T Consensus        75 ~Ia~N~~~-d~----------------~Rk~~-----------------------------------~~~~~~~~~~~~~  102 (187)
T PRK09641         75 RIATNLTI-DR----------------LRKKK-----------------------------------PDYYLDAEVAGTE  102 (187)
T ss_pred             HHHHHHHH-HH----------------HHHHC-----------------------------------CCCCHHHHHCCCC
T ss_conf             99999999-99----------------99726-----------------------------------5343126540310


Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             86047562389889989999999999999999732998899999998187986746889998996678999999999999
Q gi|254780289|r  585 TSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAI  664 (682)
Q Consensus       585 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~  664 (682)
T Consensus       103 ~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~al~~Lp~~~r~v~~L~~----~~~~s~~EIA~~l~is~~tVk~~l~RAr  177 (187)
T PRK09641        103 GLTMYSQLAA-DEALPEDQVESLELQETIQEEILQLPDKYRTVIVLKY----IEELSLKEISEILDLPVGTVKTRIHRGR  177 (187)
T ss_pred             CCHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             0004430356-6798478999999999999999828988889999999----8299899999998939999999999999


Q ss_pred             HHHCC
Q ss_conf             98329
Q gi|254780289|r  665 RKLKH  669 (682)
Q Consensus       665 ~~l~~  669 (682)
T Consensus       178 ~~Lr~  182 (187)
T PRK09641        178 EALRK  182 (187)
T ss_pred             HHHHH
T ss_conf             99999