HHsearch alignment for GI: 254780289 and conserved domain: PRK09643
>PRK09643 RNA polymerase sigma factor SigM; Reviewed.
Probab=98.80 E-value=9.1e-07 Score=72.38 Aligned_cols=170 Identities=14% Similarity=0.165 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHH
Q ss_conf 99999987653321124689998755578999887522356777887544367999988743854573120102898999
Q gi|254780289|r 427 FRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQ 506 (682)
Q Consensus 427 lK~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~ 506 (682)
T Consensus 14 D~eLi~~~~~GD~---~Af~~L~~ry~~~l~~~a~~~~~~~~~AeDvvQe~flk~~~~~~~~~~~~--~f~---~WL~~I 85 (197)
T PRK09643 14 DAELLAAHVAGDR---YAFGELFRRHHRQLWRLARRTSGTREDAADALQDAMLSAHRGAGSFRGDA--AVS---SWLHRI 85 (197)
T ss_pred HHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC--HHH---HHHHHH
T ss_conf 9999999992779---99999999999999999999919999999999999999999886338863--499---999999
Q ss_pred HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999972287046142058898999999999877608899978999870999899999998608987553635889986
Q gi|254780289|r 507 AITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTS 586 (682)
Q Consensus 507 ~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~ 586 (682)
T Consensus 86 a~N~~~-----------------d~~Rk~~--------~~~-------------------------~~~~~~----~~-- 109 (197)
T PRK09643 86 VVNACL-----------------DRLRRAK--------ARP-------------------------TVPLED----VY-- 109 (197)
T ss_pred HHHHHH-----------------HHHHHHC--------CCC-------------------------CCCCCC----CC--
T ss_conf 999999-----------------9999851--------467-------------------------788665----67--
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 04756238988998999999999999999973299889999999818798674688999899667899999999999998
Q gi|254780289|r 587 HLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRK 666 (682)
Q Consensus 587 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~ 666 (682)
T Consensus 110 -----------~~~~~~~~~~e~~~~l~~al~~Lp~~~R~vl~L~~----~eg~s~~EIA~~lgis~~tVKsrl~RAr~~ 174 (197)
T PRK09643 110 -----------PVADRETARVETAIAVQRALMRLPVEQRAALVAVD----MQGYSVADTARMLGVAEGTVKSRCARGRAR 174 (197)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf -----------78652031389999999999769998879999999----819999999999893999999999999999
Q ss_pred HCCHHHHHHHH
Q ss_conf 32967778756
Q gi|254780289|r 667 LKHPSRSKKLR 677 (682)
Q Consensus 667 l~~~~~~~~l~ 677 (682)
T Consensus 175 Lr~--~L~~l~ 183 (197)
T PRK09643 175 LAE--LLGYLR 183 (197)
T ss_pred HHH--HHHHHH
T ss_conf 999--999884