HHsearch alignment for GI: 254780289 and conserved domain: PRK09644
>PRK09644 RNA polymerase sigma factor SigM; Provisional.
Probab=98.66 E-value=2.7e-06 Score=68.70 Aligned_cols=152 Identities=20% Similarity=0.183 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEECCCHH
Q ss_conf 99987555789998875223567778875443679999887438545731201028989999999997228704614205
Q gi|254780289|r 446 KEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHM 525 (682)
Q Consensus 446 ~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i~~~~~~~~~~~r~~~~~ 525 (682)
T Consensus 4 E~ly~~y~~~l~~~~~~~~~d~~~AeDl~Qe~flk~~~~~~~~~~~---~~~~---WL~~Ia~n~~~------------- 64 (165)
T PRK09644 4 EEIYKMYINDVYRYLFSLTKSHHLAEDLLQETFYRAYIYLEDYDNQ---KVKP---WLFKVAYHTFI------------- 64 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC---CHHH---HHHHHHHHHHH-------------
T ss_conf 9999999999999999990999999999999999999988766813---1899---99999999999-------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHH
Q ss_conf 88989999999998776088999789998709998999999986089875536358899860475623898899899999
Q gi|254780289|r 526 RDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDSAI 605 (682)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 605 (682)
T Consensus 65 ----d~~Rk~--------~r~~~-------------------------~------~~~~-------~~~~~~~~~~~~~~ 94 (165)
T PRK09644 65 ----DFVRKE--------KKVVF-------------------------V------GTDE-------IETIQAESTEEYAV 94 (165)
T ss_pred ----HHHHHH--------CCCCC-------------------------C------CHHH-------HCCCCCCCHHHHHH
T ss_conf ----999974--------47577-------------------------6------5211-------00113588014999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCH
Q ss_conf 99999999999732998899999998187986746889998996678999999999999983296
Q gi|254780289|r 606 QANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHP 670 (682)
Q Consensus 606 ~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~ 670 (682)
T Consensus 95 ~~e~~~~l~~~l~~Lp~~~r~v~~L~~----~~~~s~~EIA~~l~is~~tVk~rl~RAr~~Lr~~ 155 (165)
T PRK09644 95 AKNSYEKLIQIIHTLPVIEAQAILLCD----VHELTYEEAASVLDLKENTYKSHLFRGRKRLKAL 155 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH----HHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 899999999998729999999999999----9888999999998939999999999999999999