HHsearch alignment for GI: 254780289 and conserved domain: PRK09645
>PRK09645 RNA polymerase sigma factor SigL; Provisional.
Probab=98.36 E-value=4.8e-05 Score=58.82 Aligned_cols=157 Identities=13% Similarity=0.148 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 24689998755578999887522356777887544367999988743854573120102898999999999722870461
Q gi|254780289|r 442 SIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRI 521 (682)
Q Consensus 442 ~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i~~~~~~~~~~~r~ 521 (682)
T Consensus 6 ~~af~~Ly~~~~~~l~~~~~~~~~d~~~AeDivQe~F~k~~~~~~~~~~-~~~~~~~----wL~~Ia~n~~~d~------ 74 (171)
T PRK09645 6 AALMRALYDEHAAALWRYALRLTGDRARAEDVVQETLLRAWQHPEVLAD-PTRSARA----WLFTVARNLVIDE------ 74 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHH----HHHHHHHHHHHHH------
T ss_conf 9999999999999999999999099999999999999999985887066-4141999----9999999999999------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCHH
Q ss_conf 42058898999999999877608899978999870999899999998608987553635889986047562389889989
Q gi|254780289|r 522 PVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPL 601 (682)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~d~~~~~~~ 601 (682)
T Consensus 75 ----------~R~~~~~---------------------------------~~~~~~~~~----------~~~~~~~~~~~ 101 (171)
T PRK09645 75 ----------RRSARAR---------------------------------PVEGSPDVL----------GVPEQSTPDEV 101 (171)
T ss_pred ----------HHHHHCC---------------------------------CCCCCCCHH----------HHCCCCCCCHH
T ss_conf ----------9987547---------------------------------543444233----------20256883168
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999973299889999999818798674688999899667899999999999998329
Q gi|254780289|r 602 DSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH 669 (682)
Q Consensus 602 ~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~ 669 (682)
T Consensus 102 ~---~~~~~~~l~~ai~~L~~~~r~v~~l~~----~~g~s~~EIA~~l~is~~tVk~~l~ra~~~Lr~ 162 (171)
T PRK09645 102 D---AALDRLLIADALAQLSPEHRAVLVRSY----YRGWSTAQIAADLGIPEGTVKSRLHYAVRALRL 162 (171)
T ss_pred H---HHHHHHHHHHHHHCCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 8---999999999999759999887989999----869999999999892999999999999999999