HHsearch alignment for GI: 254780289 and conserved domain: PRK09647

>PRK09647 RNA polymerase sigma factor SigE; Reviewed.
Probab=98.82  E-value=6.4e-07  Score=73.61  Aligned_cols=171  Identities=18%  Similarity=0.223  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHH
Q ss_conf             99998765332112468999875557899988752235677788754436799998874385457312010289899999
Q gi|254780289|r  429 HIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAI  508 (682)
Q Consensus       429 ~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i  508 (682)
T Consensus        33 ~~~~~~~~~~~~d~~AF~eLv~rh~~~vy~~a~r~~gn~~dAEDlvQEtFlka~r~l~~f~~--~-sf~t---WL~rIA~  106 (222)
T PRK09647         33 GTAVFDATGDKATMPSWEELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLQNYQP--G-TFEG---WLHRITT  106 (222)
T ss_pred             CHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC--C-CHHH---HHHHHHH
T ss_conf             44888741452458999999999999999999998599989999999999999986222477--3-0899---9999999


Q ss_pred             HHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEE
Q ss_conf             99997228704614205889899999999987760889997899987099989999999860898755363588998604
Q gi|254780289|r  509 TRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHL  588 (682)
Q Consensus       509 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~  588 (682)
T Consensus       107 N~~iD-~----------------~Rr~~--------r----------------------------~~~~-~~~e~~----  128 (222)
T PRK09647        107 NLFLD-M----------------VRRRQ--------R----------------------------IRME-ALPEDY----  128 (222)
T ss_pred             HHHHH-H----------------HHHCC--------C----------------------------CCCC-CCCCHH----
T ss_conf             99999-9----------------98112--------4----------------------------6655-561134----


Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf             75623898899899999999999999997329988999999981879867468899989966789999999999999832
Q gi|254780289|r  589 GDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLK  668 (682)
Q Consensus       589 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~  668 (682)
T Consensus       129 -e~~~~-~~~~pe~~~~~~~~~~~L~~al~~Lp~~qR~vl~Lr~----~eglS~~EIAe~Lgis~gTVKsrl~RAr~~LR  202 (222)
T PRK09647        129 -DRVPA-DEPNPEQIYHDARLDPDLQAALDSLPPEFRAAVVLCD----IEGLSYEEIAATLGVKLGTVRSRIHRGRQALR  202 (222)
T ss_pred             -HHCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             -42566-7899789999999999999999829999988998799----63999999999989399999999999999999


Q ss_pred             C
Q ss_conf             9
Q gi|254780289|r  669 H  669 (682)
Q Consensus       669 ~  669 (682)
T Consensus       203 ~  203 (222)
T PRK09647        203 A  203 (222)
T ss_pred             H
T ss_conf             9