HHsearch alignment for GI: 254780289 and conserved domain: PRK09647
>PRK09647 RNA polymerase sigma factor SigE; Reviewed.
Probab=98.82 E-value=6.4e-07 Score=73.61 Aligned_cols=171 Identities=18% Similarity=0.223 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHH
Q ss_conf 99998765332112468999875557899988752235677788754436799998874385457312010289899999
Q gi|254780289|r 429 HIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAI 508 (682)
Q Consensus 429 ~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i 508 (682)
T Consensus 33 ~~~~~~~~~~~~d~~AF~eLv~rh~~~vy~~a~r~~gn~~dAEDlvQEtFlka~r~l~~f~~--~-sf~t---WL~rIA~ 106 (222)
T PRK09647 33 GTAVFDATGDKATMPSWEELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLQNYQP--G-TFEG---WLHRITT 106 (222)
T ss_pred CHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC--C-CHHH---HHHHHHH
T ss_conf 44888741452458999999999999999999998599989999999999999986222477--3-0899---9999999
Q ss_pred HHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEE
Q ss_conf 99997228704614205889899999999987760889997899987099989999999860898755363588998604
Q gi|254780289|r 509 TRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHL 588 (682)
Q Consensus 509 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~ 588 (682)
T Consensus 107 N~~iD-~----------------~Rr~~--------r----------------------------~~~~-~~~e~~---- 128 (222)
T PRK09647 107 NLFLD-M----------------VRRRQ--------R----------------------------IRME-ALPEDY---- 128 (222)
T ss_pred HHHHH-H----------------HHHCC--------C----------------------------CCCC-CCCCHH----
T ss_conf 99999-9----------------98112--------4----------------------------6655-561134----
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 75623898899899999999999999997329988999999981879867468899989966789999999999999832
Q gi|254780289|r 589 GDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLK 668 (682)
Q Consensus 589 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~ 668 (682)
T Consensus 129 -e~~~~-~~~~pe~~~~~~~~~~~L~~al~~Lp~~qR~vl~Lr~----~eglS~~EIAe~Lgis~gTVKsrl~RAr~~LR 202 (222)
T PRK09647 129 -DRVPA-DEPNPEQIYHDARLDPDLQAALDSLPPEFRAAVVLCD----IEGLSYEEIAATLGVKLGTVRSRIHRGRQALR 202 (222)
T ss_pred -HHCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf -42566-7899789999999999999999829999988998799----63999999999989399999999999999999
Q ss_pred C
Q ss_conf 9
Q gi|254780289|r 669 H 669 (682)
Q Consensus 669 ~ 669 (682)
T Consensus 203 ~ 203 (222)
T PRK09647 203 A 203 (222)
T ss_pred H
T ss_conf 9