HHsearch alignment for GI: 254780289 and conserved domain: PRK10100

>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=90.10  E-value=1.5  Score=23.43  Aligned_cols=54  Identities=15%  Similarity=0.292  Sum_probs=46.9

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             29988999999981879867468899989966789999999999999832967778756
Q gi|254780289|r  619 SLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLR  677 (682)
Q Consensus       619 ~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~~~~~~l~  677 (682)
T Consensus       155 ~LT~RE~eIL~ll-----a~G~sNkEIA~~L~iSe~TVk~H~~~I~~KL~v~~R~qav~  208 (216)
T PRK10100        155 LLTHREKEILNKL-----RIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVS  208 (216)
T ss_pred             CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             9998999999999-----87999999998949889899999999999809999999999