HHsearch alignment for GI: 254780289 and conserved domain: PRK10100
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=90.10 E-value=1.5 Score=23.43 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 29988999999981879867468899989966789999999999999832967778756
Q gi|254780289|r 619 SLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLR 677 (682)
Q Consensus 619 ~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~~~~~~l~ 677 (682)
T Consensus 155 ~LT~RE~eIL~ll-----a~G~sNkEIA~~L~iSe~TVk~H~~~I~~KL~v~~R~qav~ 208 (216)
T PRK10100 155 LLTHREKEILNKL-----RIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVS 208 (216)
T ss_pred CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9998999999999-----87999999998949889899999999999809999999999