HHsearch alignment for GI: 254780289 and conserved domain: PRK11475

>PRK11475 DNA-binding transcriptional activator BglJ; Provisional.
Probab=94.31  E-value=0.19  Score=30.32  Aligned_cols=52  Identities=21%  Similarity=0.309  Sum_probs=45.2

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             299889999999818798674688999899667899999999999998329677787
Q gi|254780289|r  619 SLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKK  675 (682)
Q Consensus       619 ~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~~~~~~  675 (682)
T Consensus       134 ~Lt~rE~eVl~l~-----a~G~s~~eIA~~L~~S~kTv~thr~~~m~KLgv~s~a~L  185 (205)
T PRK11475        134 MLSPTEREILRFM-----SRGYSMPQIAEQLERNIKTIRAHKFNVMSKLGVSSDAGL  185 (205)
T ss_pred             CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             8985899999999-----769999999999788888999999999998299987999