HHsearch alignment for GI: 254780289 and conserved domain: PRK11475
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional.
Probab=94.31 E-value=0.19 Score=30.32 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 299889999999818798674688999899667899999999999998329677787
Q gi|254780289|r 619 SLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKK 675 (682)
Q Consensus 619 ~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~~~~~~ 675 (682)
T Consensus 134 ~Lt~rE~eVl~l~-----a~G~s~~eIA~~L~~S~kTv~thr~~~m~KLgv~s~a~L 185 (205)
T PRK11475 134 MLSPTEREILRFM-----SRGYSMPQIAEQLERNIKTIRAHKFNVMSKLGVSSDAGL 185 (205)
T ss_pred CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 8985899999999-----769999999999788888999999999998299987999