HHsearch alignment for GI: 254780289 and conserved domain: PRK12518

>PRK12518 RNA polymerase sigma factor; Provisional.
Probab=98.62  E-value=3.8e-06  Score=67.52  Aligned_cols=165  Identities=18%  Similarity=0.200  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHH
Q ss_conf             99876533211246899987555789998875223567778875443679999887438545731201028989999999
Q gi|254780289|r  431 VSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITR  510 (682)
Q Consensus       431 ~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i~~  510 (682)
T Consensus         2 i~~~~~Gd~---~Af~~ly~~y~~~l~~~~~~~~~~~-~AEDi~Qd~fik~~~~~~~~~~~--~~~~~----wl~~ia~N   71 (175)
T PRK12518          2 IQRCQRGDR---QAFRQLYRRYQQKVRSTLYQLCGRE-LLDDLVQEVFLRVWKGLPKLRNP--AYFST----WLYRITWN   71 (175)
T ss_pred             HHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHCCCCCCCC--CHHHH----HHHHHHHH
T ss_conf             898986589---9999999999999999999977998-89999999999998711127982--35999----99999999


Q ss_pred             HHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE
Q ss_conf             99722870461420588989999999998776088999789998709998999999986089875536358899860475
Q gi|254780289|r  511 SIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGD  590 (682)
Q Consensus       511 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~  590 (682)
T Consensus        72 ~~----------------~d~~Rk~~r----------------------------------~~~~~~~~~~~~~------   95 (175)
T PRK12518         72 VA----------------TDARRQFAK----------------------------------RPSRIQQDSSLDQ------   95 (175)
T ss_pred             HH----------------HHHHHHHHC----------------------------------CCCCCCCCCCCCC------
T ss_conf             99----------------999999870----------------------------------2432332100024------


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             6238988998999999999999999973299889999999818798674688999899667899999999999998329
Q gi|254780289|r  591 FIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH  669 (682)
Q Consensus       591 ~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~  669 (682)
T Consensus        96 --~~~~~~~~--~~~~~~~~~~l~~~l~~Lp~~~r~vi~l~~----~~~~s~~EIA~~l~is~~tVk~~l~Ra~k~Lr~  166 (175)
T PRK12518         96 --PSRPSDEP--DLMQLHYQDLVQQGLATLSLEHRAVLVLHD----LEDLPQKEIAEILNIPVGTVKSRLFYARRQLRK  166 (175)
T ss_pred             --CCCCCCCH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             --56788976--999999999999999769999999999999----929999999999895999999999999999999