HHsearch alignment for GI: 254780289 and conserved domain: PRK12525
>PRK12525 RNA polymerase sigma factor; Provisional.
Probab=97.95 E-value=0.00083 Score=49.04 Aligned_cols=152 Identities=14% Similarity=0.102 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEECCCHH
Q ss_conf 99987555789998875223567778875443679999887438545731201028989999999997228704614205
Q gi|254780289|r 446 KEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHM 525 (682)
Q Consensus 446 ~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i~~~~~~~~~~~r~~~~~ 525 (682)
T Consensus 12 ~~Lf~~~y~~L~~~~~r~lg~~~~AeDivQe~Flr~~~~~~~~~~------~~~~-a~L~~iArnl~~d~~R-------- 76 (168)
T PRK12525 12 GQMFQQDYDWLCKKLSRQLGCPHSAEDIASETFLQVLALPDPASI------REPR-ALLTTIARRLMYEGWR-------- 76 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCC------CCHH-HHHHHHHHHHHHHHHH--------
T ss_conf 999999999999999999498857999999999999867774554------5889-9999999999999999--------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHH
Q ss_conf 88989999999998776088999789998709998999999986089875536358899860475623898899899999
Q gi|254780289|r 526 RDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDSAI 605 (682)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 605 (682)
T Consensus 77 --------r~~~~~-------~~~~------------------------~~----~~---------~~~~~~~~pe~~~~ 104 (168)
T PRK12525 77 --------RQDLER-------AYLQ------------------------SL----AE---------APEAVQPSPEEQWM 104 (168)
T ss_pred --------HHHHHH-------HHHH------------------------HH----HC---------CCCCCCCCHHHHHH
T ss_conf --------999999-------8888------------------------88----51---------66656898678999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 999999999997329988999999981879867468899989966789999999999999832
Q gi|254780289|r 606 QANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLK 668 (682)
Q Consensus 606 ~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~ 668 (682)
T Consensus 105 ~~e~~~~l~~al~~LP~~~R~vflL~~----~eGlsy~EIAe~LgIS~~tV~~~l~rAl~~c~ 163 (168)
T PRK12525 105 VIETLLAIDRLLDGLSGKARAAFLMSQ----LEGLTYVEIGERLGVSLSRIHQYMVEAFKCCY 163 (168)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999998639999999999999----92999999999989799999999999999999