HHsearch alignment for GI: 254780289 and conserved domain: TIGR03541
>TIGR03541 reg_near_HchA LuxR family transcriptional regulatory, chaperone HchA-associated. Members of this protein family belong to the LuxR transcriptional regulator family, and contain both autoinducer binding (pfam03472) and transcriptional regulator (pfam00196) domains. Members, however, occur only in a few members of the Gammaproteobacteria that have the chaperone/aminopeptidase HchA, and are always encoded by the adjacent gene.
Probab=93.90 E-value=0.58 Score=26.59 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=46.7
Q ss_pred HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 3299889999999818798674688999899667899999999999998329677787
Q gi|254780289|r 618 ASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKK 675 (682)
Q Consensus 618 ~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~~~~~~ 675 (682)
T Consensus 170 ~~LT~RE~E~L~w~-----A~Gkt~~eIa~iL~iSe~TV~~hl~~a~~KLga~nr~qA 222 (232)
T TIGR03541 170 GVLSEREREVLAWT-----ALGRRQADIAAILGISERTVENHLRSARRKLGVATTAQA 222 (232)
T ss_pred CCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99898999999999-----879999999999698999999999999998489999999