HHsearch alignment for GI: 254780289 and conserved domain: pfam04967

>pfam04967 HTH_10 HTH DNA binding domain.
Probab=93.67  E-value=0.28  Score=29.05  Aligned_cols=48  Identities=25%  Similarity=0.484  Sum_probs=37.0

Q ss_pred             CCHHHHHHHHHHHCCC---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             9988999999981879---86746889998996678999999999999983
Q gi|254780289|r  620 LTPREERVLRMRFGIG---MNTDHTLEEVGKQFCVTRERIRQIEAKAIRKL  667 (682)
Q Consensus       620 l~~re~~v~~~r~g~~---~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l  667 (682)
T Consensus         1 LT~rQ~evl~~A~~~GYfd~PR~~~l~elA~~lgis~sT~~~hLr~ae~ki   51 (53)
T pfam04967         1 LTDRQREILRLAYKMGYFDYPRRVTLKDLAKELGISKSTLSEHLRRAESKL   51 (53)
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             988999999999986897788768899999996989999999999999987