HHsearch alignment for GI: 254780289 and conserved domain: pfam04967
>pfam04967 HTH_10 HTH DNA binding domain.
Probab=93.67 E-value=0.28 Score=29.05 Aligned_cols=48 Identities=25% Similarity=0.484 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHCCC---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9988999999981879---86746889998996678999999999999983
Q gi|254780289|r 620 LTPREERVLRMRFGIG---MNTDHTLEEVGKQFCVTRERIRQIEAKAIRKL 667 (682)
Q Consensus 620 l~~re~~v~~~r~g~~---~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l 667 (682)
T Consensus 1 LT~rQ~evl~~A~~~GYfd~PR~~~l~elA~~lgis~sT~~~hLr~ae~ki 51 (53)
T pfam04967 1 LTDRQREILRLAYKMGYFDYPRRVTLKDLAKELGISKSTLSEHLRRAESKL 51 (53)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 988999999999986897788768899999996989999999999999987