HHsearch alignment for GI: 254780289 and conserved domain: pfam07638

>pfam07638 Sigma70_ECF ECF sigma factor. These proteins are probably RNA polymerase sigma factors belonging to the extra-cytoplasmic function (ECF) subfamily and show sequence similarity to pfam04542 and pfam04545.
Probab=98.61  E-value=3.8e-06  Score=67.48  Aligned_cols=175  Identities=17%  Similarity=0.212  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHHCCCCCCCEEEHH
Q ss_conf             889999998765332112468999875557899988752235677788-----754436799998874385457312010
Q gi|254780289|r  425 SEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLD-----LIQEGNIGLMKAAEKFDWCLGYKFSTY  499 (682)
Q Consensus       425 ~ElK~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~-----~~~~~~~~l~~a~~~~~~~~g~~f~ty  499 (682)
T Consensus         2 ~~~teLi~~~k~GD~---~Af~~L~~~y~~~l~r~a~~~l~~~~~~ed~~~~~lvqe~Flrl~~~~~~~~~~~~~~f~~~   78 (185)
T pfam07638         2 QEVTQLLQQVKDGDA---AATEQLLPLVYDELRRLAGSKLQNERRGHTLQPTALVHEAFVRLVDTEDFPDWSGRGHFFAA   78 (185)
T ss_pred             CHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             479999999986779---99999999999999999999963532101677899999999999840202367756899999


Q ss_pred             HHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             28989999999997228704614205889899999999987760889997899987099989999999860898755363
Q gi|254780289|r  500 AMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETP  579 (682)
Q Consensus       500 a~~~i~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~  579 (682)
T Consensus        79 l~~i~~~~~id~~R~~~~~~~~----------------------~---~~~----------------------~~~~~--  109 (185)
T pfam07638        79 AAEAMRRILIDHARRRQRQKRG----------------------G---DVQ----------------------RRELD--  109 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC----------------------C---CCH----------------------HCCHH--
T ss_conf             9999999999999988866126----------------------6---410----------------------10101--


Q ss_pred             CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf             58899860475623898899899999999999999997329988999999981879867468899989966789999999
Q gi|254780289|r  580 IGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQI  659 (682)
Q Consensus       580 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi  659 (682)
T Consensus       110 --~~--------~~~~~~~~~~~~~~---l~~~~-~~l~~Lpp~~r~v~~L~~----~eglS~~EIAe~Lgis~~TVk~r  171 (185)
T pfam07638       110 --EV--------VDNGDSPNPDLLLD---LDEAL-EQLFSLSPRQARLVELRF----FAGLSNDEIAERLGVSERTVERN  171 (185)
T ss_pred             --HH--------CCCCCCCCHHHHHH---HHHHH-HHHHCCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             --10--------01456898788999---99999-998648998888988899----75999999999979699899999


Q ss_pred             HHHHHHHHCC
Q ss_conf             9999998329
Q gi|254780289|r  660 EAKAIRKLKH  669 (682)
Q Consensus       660 ~~~a~~~l~~  669 (682)
T Consensus       172 l~~Ar~~Lr~  181 (185)
T pfam07638       172 WALARAWLHR  181 (185)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999998