HHsearch alignment for GI: 254780289 and conserved domain: pfam07638
>pfam07638 Sigma70_ECF ECF sigma factor. These proteins are probably RNA polymerase sigma factors belonging to the extra-cytoplasmic function (ECF) subfamily and show sequence similarity to pfam04542 and pfam04545.
Probab=98.61 E-value=3.8e-06 Score=67.48 Aligned_cols=175 Identities=17% Similarity=0.212 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHHCCCCCCCEEEHH
Q ss_conf 889999998765332112468999875557899988752235677788-----754436799998874385457312010
Q gi|254780289|r 425 SEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLD-----LIQEGNIGLMKAAEKFDWCLGYKFSTY 499 (682)
Q Consensus 425 ~ElK~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~-----~~~~~~~~l~~a~~~~~~~~g~~f~ty 499 (682)
T Consensus 2 ~~~teLi~~~k~GD~---~Af~~L~~~y~~~l~r~a~~~l~~~~~~ed~~~~~lvqe~Flrl~~~~~~~~~~~~~~f~~~ 78 (185)
T pfam07638 2 QEVTQLLQQVKDGDA---AATEQLLPLVYDELRRLAGSKLQNERRGHTLQPTALVHEAFVRLVDTEDFPDWSGRGHFFAA 78 (185)
T ss_pred CHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 479999999986779---99999999999999999999963532101677899999999999840202367756899999
Q ss_pred HHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 28989999999997228704614205889899999999987760889997899987099989999999860898755363
Q gi|254780289|r 500 AMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETP 579 (682)
Q Consensus 500 a~~~i~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~ 579 (682)
T Consensus 79 l~~i~~~~~id~~R~~~~~~~~----------------------~---~~~----------------------~~~~~-- 109 (185)
T pfam07638 79 AAEAMRRILIDHARRRQRQKRG----------------------G---DVQ----------------------RRELD-- 109 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC----------------------C---CCH----------------------HCCHH--
T ss_conf 9999999999999988866126----------------------6---410----------------------10101--
Q ss_pred CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 58899860475623898899899999999999999997329988999999981879867468899989966789999999
Q gi|254780289|r 580 IGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQI 659 (682)
Q Consensus 580 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi 659 (682)
T Consensus 110 --~~--------~~~~~~~~~~~~~~---l~~~~-~~l~~Lpp~~r~v~~L~~----~eglS~~EIAe~Lgis~~TVk~r 171 (185)
T pfam07638 110 --EV--------VDNGDSPNPDLLLD---LDEAL-EQLFSLSPRQARLVELRF----FAGLSNDEIAERLGVSERTVERN 171 (185)
T ss_pred --HH--------CCCCCCCCHHHHHH---HHHHH-HHHHCCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHH
T ss_conf --10--------01456898788999---99999-998648998888988899----75999999999979699899999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999998329
Q gi|254780289|r 660 EAKAIRKLKH 669 (682)
Q Consensus 660 ~~~a~~~l~~ 669 (682)
T Consensus 172 l~~Ar~~Lr~ 181 (185)
T pfam07638 172 WALARAWLHR 181 (185)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998