HHsearch alignment for GI: 254780289 and conserved domain: smart00421

>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon

Probab=95.45  E-value=0.055  Score=34.66  Aligned_cols=56  Identities=34%  Similarity=0.520  Sum_probs=48.9

Q ss_pred             HHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             7329988999999981879867468899989966789999999999999832967778756
Q gi|254780289|r  617 LASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLR  677 (682)
Q Consensus       617 l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~~~~~~l~  677 (682)
T Consensus         1 l~~LT~rE~~il~~l-----~~G~s~~eIA~~L~is~~TV~~~~~~i~~Kl~v~~r~elv~   56 (58)
T smart00421        1 LASLTPREREVLRLL-----AEGLTNKEIAERLGISEKTVKTHLSNIMRKLGVRSRTQAVR   56 (58)
T ss_pred             CCCCCHHHHHHHHHH-----HHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             976189999999999-----81799999998989789899999999999848999999995