BLAST/PSIBLAST alignment of GI: 254780289 and GI: 150397423 at iteration 1
>gi|150397423|ref|YP_001327890.1| RNA polymerase sigma factor RpoD [Sinorhizobium medicae WSM419] Length = 684
>gi|150028938|gb|ABR61055.1| RNA polymerase, sigma 70 subunit, RpoD [Sinorhizobium medicae WSM419] Length = 684
 Score =  823 bits (2125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/702 (61%), Positives = 530/702 (75%), Gaps = 40/702 (5%)

Query: 1   MTIGKKRNRDSDSEHEDSDDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSS 60
           M    K N ++D E E + D  + D SDD+ KKMIK A++RGYVT++ELN+ LP +EV+S
Sbjct: 1   MATKVKENEEADVEREGAPDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS 60

Query: 61  EQMEDTVAMLSNMGINVVDGDDLE--------------DEEGSEDSLDLASSASNSSVFL 106
           EQ+EDT++MLS+MGINV++ ++ E              + EG E      + AS +++  
Sbjct: 61  EQIEDTMSMLSDMGINVIEDEEAEEAGGSDDDDSSDDAESEGGE-----LAPASGTALAT 115

Query: 107 QKRKDSADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLTFQA 166
            K+K+  DR TDDPVRMYLREMGS+ELLSREGEIAIAKRIEAGR  M+A LCESPLTFQA
Sbjct: 116 SKKKEPTDR-TDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQA 174

Query: 167 LIIWRDELNDGTTLLREIIDLEACI-GPESKGGFFHGTEGHSYQKREDSSQEKERDDVQE 225
           LIIWRDELN+G TLLREIIDLE    GPE+K           +Q  E    E +R   +E
Sbjct: 175 LIIWRDELNEGQTLLREIIDLETTYSGPEAKAA-------PQFQSPEKI--EADRKAAEE 225

Query: 226 TEGDIESAAKVSKDDRSKVDSPPENAENDERNLDEDEDDSAHTLSAMEDQLRPKVMCALD 285
            E   ++ A  + DD + V    + AE +E +    +D+S  +L+AME +LRP+VM  LD
Sbjct: 226 KEKVRKTRAAANDDDITNVGGEGQPAEEEEDD----DDESNLSLAAMEAELRPQVMETLD 281

Query: 286 EIAEVYRELRSLQDN------AVNGQKDEKSSVKCKVLKEKLVKLVGSLSLNQSRIDLLV 339
            IAE Y++LR LQD       A  G        + K LK++L+K V SLSLNQ+RID LV
Sbjct: 282 VIAETYKKLRKLQDQQVEARLAATGTLSPAQERRYKELKDELIKAVKSLSLNQNRIDALV 341

Query: 340 EQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPEGEWKNFV 399
           EQLYDISKR+  NEG LLRLA+SYG+KR+ FLE++ G ELDP+W+    +     WK F 
Sbjct: 342 EQLYDISKRLTQNEGRLLRLAESYGVKREAFLEQYSGAELDPNWMKSISNLAGKGWKEFA 401

Query: 400 ACEVDSILKIRNEIKSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISV 459
             E  +I  IR EI++++ ETGISI+EFR IVSMV+KGE EA IAKKEMVEANLRLVIS+
Sbjct: 402 RAENQTIRDIRQEIQNLATETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISI 461

Query: 460 AKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTI 519
           AKKYTNRGLQFLDLIQEGNIGLMKA +KF++  GYKFSTYA WW++QAITRSIADQ+ TI
Sbjct: 462 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI 521

Query: 520 RIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETP 579
           RIPVHM + I+K+VRT+R+M ++I REPTPEE+A+KLAMP+E VRKVLKI KEPISLETP
Sbjct: 522 RIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETP 581

Query: 580 IGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTD 639
           +GDE+ SHLGDFIEDKNA+ P+D+AIQANLRETTTRVLASLTPREERVLRMRFGIGMNTD
Sbjct: 582 VGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTD 641

Query: 640 HTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD 681
           HTLEEVG+QF VTRERIRQIEAKA+RKLKHPSRS+KLRSFLD
Sbjct: 642 HTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683