BLAST/PSIBLAST alignment of GI: 254780289 and GI: 150397423 at iteration 1
>gi|150397423|ref|YP_001327890.1| RNA polymerase sigma factor RpoD [Sinorhizobium medicae WSM419] Length = 684
>gi|150028938|gb|ABR61055.1| RNA polymerase, sigma 70 subunit, RpoD [Sinorhizobium medicae WSM419] Length = 684
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/702 (61%), Positives = 530/702 (75%), Gaps = 40/702 (5%)
Query: 1 MTIGKKRNRDSDSEHEDSDDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSS 60
M K N ++D E E + D + D SDD+ KKMIK A++RGYVT++ELN+ LP +EV+S
Sbjct: 1 MATKVKENEEADVEREGAPDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS 60
Query: 61 EQMEDTVAMLSNMGINVVDGDDLE--------------DEEGSEDSLDLASSASNSSVFL 106
EQ+EDT++MLS+MGINV++ ++ E + EG E + AS +++
Sbjct: 61 EQIEDTMSMLSDMGINVIEDEEAEEAGGSDDDDSSDDAESEGGE-----LAPASGTALAT 115
Query: 107 QKRKDSADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLTFQA 166
K+K+ DR TDDPVRMYLREMGS+ELLSREGEIAIAKRIEAGR M+A LCESPLTFQA
Sbjct: 116 SKKKEPTDR-TDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQA 174
Query: 167 LIIWRDELNDGTTLLREIIDLEACI-GPESKGGFFHGTEGHSYQKREDSSQEKERDDVQE 225
LIIWRDELN+G TLLREIIDLE GPE+K +Q E E +R +E
Sbjct: 175 LIIWRDELNEGQTLLREIIDLETTYSGPEAKAA-------PQFQSPEKI--EADRKAAEE 225
Query: 226 TEGDIESAAKVSKDDRSKVDSPPENAENDERNLDEDEDDSAHTLSAMEDQLRPKVMCALD 285
E ++ A + DD + V + AE +E + +D+S +L+AME +LRP+VM LD
Sbjct: 226 KEKVRKTRAAANDDDITNVGGEGQPAEEEEDD----DDESNLSLAAMEAELRPQVMETLD 281
Query: 286 EIAEVYRELRSLQDN------AVNGQKDEKSSVKCKVLKEKLVKLVGSLSLNQSRIDLLV 339
IAE Y++LR LQD A G + K LK++L+K V SLSLNQ+RID LV
Sbjct: 282 VIAETYKKLRKLQDQQVEARLAATGTLSPAQERRYKELKDELIKAVKSLSLNQNRIDALV 341
Query: 340 EQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPEGEWKNFV 399
EQLYDISKR+ NEG LLRLA+SYG+KR+ FLE++ G ELDP+W+ + WK F
Sbjct: 342 EQLYDISKRLTQNEGRLLRLAESYGVKREAFLEQYSGAELDPNWMKSISNLAGKGWKEFA 401
Query: 400 ACEVDSILKIRNEIKSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISV 459
E +I IR EI++++ ETGISI+EFR IVSMV+KGE EA IAKKEMVEANLRLVIS+
Sbjct: 402 RAENQTIRDIRQEIQNLATETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISI 461
Query: 460 AKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTI 519
AKKYTNRGLQFLDLIQEGNIGLMKA +KF++ GYKFSTYA WW++QAITRSIADQ+ TI
Sbjct: 462 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI 521
Query: 520 RIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETP 579
RIPVHM + I+K+VRT+R+M ++I REPTPEE+A+KLAMP+E VRKVLKI KEPISLETP
Sbjct: 522 RIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETP 581
Query: 580 IGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTD 639
+GDE+ SHLGDFIEDKNA+ P+D+AIQANLRETTTRVLASLTPREERVLRMRFGIGMNTD
Sbjct: 582 VGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTD 641
Query: 640 HTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD 681
HTLEEVG+QF VTRERIRQIEAKA+RKLKHPSRS+KLRSFLD
Sbjct: 642 HTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683