BLAST/PSIBLAST alignment of GI: 254780289 and GI: 15889446 at iteration 1
>gi|15889446|ref|NP_355127.1| RNA polymerase sigma factor RpoD [Agrobacterium tumefaciens str. C58] Length = 684
>gi|20141718|sp|P33452|RPOD_AGRT5 RecName: Full=RNA polymerase sigma factor rpoD; Short=Sigma-A; AltName: Full=Major vegetative sigma factor Length = 684
>gi|15157308|gb|AAK87912.1| RNA polymerase sigma factor RpoD [Agrobacterium tumefaciens str. C58] Length = 684
Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/703 (62%), Positives = 530/703 (75%), Gaps = 42/703 (5%)
Query: 1 MTIGKKRNRDSDSEHEDSDDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSS 60
M K N ++++E + + D + D SDD+ KKMIK A++RGYVT++ELN+ LP +EV+S
Sbjct: 1 MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS 60
Query: 61 EQMEDTVAMLSNMGINVVD-------------GD-DLEDEEGSEDSLDLASSASNSSVFL 106
EQ+EDT+AMLS+MGINV++ GD D E+ EG E LA S +++
Sbjct: 61 EQIEDTMAMLSDMGINVIEDEDAEEAAPAEDDGDSDNEESEGGE----LAPSG-GTALAT 115
Query: 107 QKRKDSADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLTFQA 166
K+K+ DR TDDPVRMYLREMGS+ELLSREGEIAIAKRIEAGR M++ LCESPLTFQA
Sbjct: 116 AKKKEPTDR-TDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQA 174
Query: 167 LIIWRDELNDGTTLLREIIDLEACI-GPESKGGF-FHGTEGHSYQKREDSSQEKERDDVQ 224
LIIWRDELN+GTTLLREIIDLE GPE+K F E ++ +EK R ++
Sbjct: 175 LIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRR-LR 233
Query: 225 ETEGDIESAAKVSKDDRSKVDSPPENAENDERNLDEDEDDSAHTLSAMEDQLRPKVMCAL 284
GD E V D PPE E D+ S +L+AME +LRP+VM L
Sbjct: 234 APTGD-EDVTDVGGDG-----LPPEEEEEDDDE-------SNLSLAAMEAELRPQVMETL 280
Query: 285 DEIAEVYRELRSLQDN------AVNGQKDEKSSVKCKVLKEKLVKLVGSLSLNQSRIDLL 338
D IA+ Y++LR LQD A G + K LK++L+ V SLSLNQ+RID L
Sbjct: 281 DTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSL 340
Query: 339 VEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPEGEWKNF 398
VEQLYDISKR+M NEG LLRLA+SYG+KRD FLE++ G ELDP+W+ + WK F
Sbjct: 341 VEQLYDISKRLMQNEGRLLRLAESYGVKRDSFLEQYHGAELDPNWMKSITNLAARGWKEF 400
Query: 399 VACEVDSILKIRNEIKSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVIS 458
E ++I +IR EI+++S ETGISI+EFR IVSMV+KGE EA IAKKEMVEANLRLVIS
Sbjct: 401 AREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVIS 460
Query: 459 VAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCT 518
+AKKYTNRGLQFLDLIQEGNIGLMKA +KF++ GYKFSTYA WW++QAITRSIADQ+ T
Sbjct: 461 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 520
Query: 519 IRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLET 578
IRIPVHM + I+K+VRT+R+M ++I REPTPEE+A+KLAMP+E VRKVLKI KEPISLET
Sbjct: 521 IRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLET 580
Query: 579 PIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNT 638
P+GDE+ SHLGDFIEDKNA+ P+D+AIQANLRETTTRVLASLTPREERVLRMRFGIGMNT
Sbjct: 581 PVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNT 640
Query: 639 DHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD 681
DHTLEEVG+QF VTRERIRQIEAKA+RKLKHPSRS+KLRSFLD
Sbjct: 641 DHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683