BLAST/PSIBLAST alignment of GI: 254780289 and GI: 209550278 at iteration 1
>gi|209550278|ref|YP_002282195.1| RNA polymerase sigma factor RpoD [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 685
>gi|209536034|gb|ACI55969.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 685
 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/709 (61%), Positives = 526/709 (74%), Gaps = 53/709 (7%)

Query: 1   MTIGKKRNRDSDSEHEDSDDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSS 60
           M    K N D++ E + + D  + D SDD+ KKMIK A++RGYVT++ELNA LP +EV+S
Sbjct: 1   MATKVKENEDAEVERDGASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS 60

Query: 61  EQMEDTVAMLSNMGINVVD-----------------GDDLEDEEGSEDSLDLASSASNSS 103
           EQ+EDT++MLS+MGINV++                     E+ EG E    LA S S ++
Sbjct: 61  EQIEDTMSMLSDMGINVIEDEEAEEAGASGGGDDDDAGSDEESEGGE----LAPS-SGTA 115

Query: 104 VFLQKRKDSADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLT 163
           +   K+K+  DR TDDPVRMYLREMGS+ELLSREGEIAIAKRIEAGR  M+A LCESPLT
Sbjct: 116 LATAKKKEPTDR-TDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLT 174

Query: 164 FQALIIWRDELNDGTTLLREIIDLEACI-GPESKGGF-FHGTEGHSYQKREDSSQEKERD 221
           FQA+IIWRDELN+GTTLLREIIDLE    GPE+K    F   E     ++    +EK R 
Sbjct: 175 FQAIIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTR- 233

Query: 222 DVQETEGDIESAAKVSKDDRSKVDS---PPENAENDERNLDEDEDDSAHTLSAMEDQLRP 278
                       A+   DD + V     PPE  E DE         S  +L+AME +LRP
Sbjct: 234 -----------RARSGDDDITDVGGEGLPPEEEEEDEDE-------SNLSLAAMEAELRP 275

Query: 279 KVMCALDEIAEVYRELRSLQDNAV------NGQKDEKSSVKCKVLKEKLVKLVGSLSLNQ 332
           +VM  LD IAE Y++LR LQD  V      +G        + K LK++L+K V SLSLNQ
Sbjct: 276 QVMETLDTIAETYKKLRKLQDQQVEQRLSASGTLSSAQERRYKELKDELIKAVKSLSLNQ 335

Query: 333 SRIDLLVEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPE 392
           +RID LVEQLYDI+KR++ NEG LLRLA+SYG+KRD FLE++QG ELDP+W+    +   
Sbjct: 336 NRIDALVEQLYDINKRLVSNEGRLLRLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAA 395

Query: 393 GEWKNFVACEVDSILKIRNEIKSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEAN 452
             WK F   E  +I  IR EI++++ ETGISISEFR IV MV+KGE EA IAKKEMVEAN
Sbjct: 396 RGWKEFARGENTTIRDIRQEIQNLATETGISISEFRRIVHMVQKGEREARIAKKEMVEAN 455

Query: 453 LRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSI 512
           LRLVIS+AKKYTNRGLQFLDLIQEGNIGLMKA +KF++  GYKFSTYA WW++QAITRSI
Sbjct: 456 LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 515

Query: 513 ADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKE 572
           ADQ+ TIRIPVHM + I+K+VRT+R+M ++I REPTPEE+A+KLAMP+E VRKVLKI KE
Sbjct: 516 ADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKE 575

Query: 573 PISLETPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRF 632
           PISLETP+GDE+ SHLGDFIEDKNA+ P+D+AIQANLRETTTRVLASLTPREERVLRMRF
Sbjct: 576 PISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRF 635

Query: 633 GIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD 681
           GIGMNTDHTLEEVG+QF VTRERIRQIEAKA+RKLKHPSRS+KLRSFLD
Sbjct: 636 GIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 684