BLAST/PSIBLAST alignment of GI: 254780289 and GI: 222149282 at iteration 1
>gi|222149282|ref|YP_002550239.1| RNA polymerase sigma factor RpoD [Agrobacterium vitis S4] Length = 681
>gi|221736266|gb|ACM37229.1| RNA polymerase sigma factor RpoD [Agrobacterium vitis S4] Length = 681
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/704 (62%), Positives = 531/704 (75%), Gaps = 47/704 (6%)
Query: 1 MTIGKKRNRDSDSEHEDSDDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSS 60
M K N ++++E + + D + D SDD+ KKMIK A++RGYVT++ELN+ LP +EV+S
Sbjct: 1 MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS 60
Query: 61 EQMEDTVAMLSNMGINVVDGDDLED---------EEGSEDSLDLASSASNSSVFLQKRKD 111
EQ+EDT+AMLS+MGINVV+ +D ED EE + +LA A N++V K+K+
Sbjct: 61 EQIEDTMAMLSDMGINVVEDEDAEDPAAEESDNDEEAESEGGELAP-AGNTAVATAKKKE 119
Query: 112 SADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLTFQALIIWR 171
DR TDDPVRMYLREMGS+ELLSREGEIAIAKRIEAGR M+A LCESPLTFQALIIWR
Sbjct: 120 PTDR-TDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWR 178
Query: 172 DELNDGTTLLREIIDLEACI-GPESKGG-FFHGTEGHSYQKREDSSQEKER------DDV 223
DELN+GTTLLREIIDLE GPE+K F E ++ +EK R DD+
Sbjct: 179 DELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRVRSSEDDI 238
Query: 224 QETEGDIESAAKVSKDDRSKVDSPPENAENDERNLDEDEDDSAHTLSAMEDQLRPKVMCA 283
GD++ + +D+ S +L+AME +LRP+VM
Sbjct: 239 TNVGGDMQMPEEEEEDEDE----------------------SNLSLAAMEAELRPQVMET 276
Query: 284 LDEIAEVYRELRSLQDNAVN------GQKDEKSSVKCKVLKEKLVKLVGSLSLNQSRIDL 337
LD IA+ Y++LR LQD V G + K LK++L+ V SLSLNQ+RID
Sbjct: 277 LDLIADTYKKLRKLQDQQVEARLACAGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDS 336
Query: 338 LVEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPEGEWKN 397
LVEQLYDISKR+M NEG LLRLA+SYG+KRD FLE++QG ELDP+W+ + WK+
Sbjct: 337 LVEQLYDISKRLMQNEGRLLRLAESYGVKRDSFLEQYQGAELDPNWMKSVGNLAARGWKD 396
Query: 398 FVACEVDSILKIRNEIKSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVI 457
F E ++I +IR EI++++ ETGISI+EFR IVSMV+KGE EA IAKKEMVEANLRLVI
Sbjct: 397 FAREENNTIREIRQEIQNLATETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVI 456
Query: 458 SVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSC 517
S+AKKYTNRGLQFLDLIQEGNIGLMKA +KF++ GYKFSTYA WW++QAITRSIADQ+
Sbjct: 457 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 516
Query: 518 TIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLE 577
TIRIPVHM + I+K+VRT+R+M ++I REPTPEE+A+KLAMP+E VRKVLKI KEPISLE
Sbjct: 517 TIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLE 576
Query: 578 TPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMN 637
TP+GDE+ SHLGDFIEDKNA+ P+D+AIQANLRETTTRVLASLTPREERVLRMRFGIGMN
Sbjct: 577 TPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMN 636
Query: 638 TDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD 681
TDHTLEEVG+QF VTRERIRQIEAKA+RKLKHPSRS+KLRSFLD
Sbjct: 637 TDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 680