BLAST/PSIBLAST alignment of GI: 254780289 and GI: 222149282 at iteration 1
>gi|222149282|ref|YP_002550239.1| RNA polymerase sigma factor RpoD [Agrobacterium vitis S4] Length = 681
>gi|221736266|gb|ACM37229.1| RNA polymerase sigma factor RpoD [Agrobacterium vitis S4] Length = 681
 Score =  838 bits (2166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/704 (62%), Positives = 531/704 (75%), Gaps = 47/704 (6%)

Query: 1   MTIGKKRNRDSDSEHEDSDDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSS 60
           M    K N ++++E + + D  + D SDD+ KKMIK A++RGYVT++ELN+ LP +EV+S
Sbjct: 1   MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS 60

Query: 61  EQMEDTVAMLSNMGINVVDGDDLED---------EEGSEDSLDLASSASNSSVFLQKRKD 111
           EQ+EDT+AMLS+MGINVV+ +D ED         EE   +  +LA  A N++V   K+K+
Sbjct: 61  EQIEDTMAMLSDMGINVVEDEDAEDPAAEESDNDEEAESEGGELAP-AGNTAVATAKKKE 119

Query: 112 SADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLTFQALIIWR 171
             DR TDDPVRMYLREMGS+ELLSREGEIAIAKRIEAGR  M+A LCESPLTFQALIIWR
Sbjct: 120 PTDR-TDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWR 178

Query: 172 DELNDGTTLLREIIDLEACI-GPESKGG-FFHGTEGHSYQKREDSSQEKER------DDV 223
           DELN+GTTLLREIIDLE    GPE+K    F   E     ++    +EK R      DD+
Sbjct: 179 DELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRVRSSEDDI 238

Query: 224 QETEGDIESAAKVSKDDRSKVDSPPENAENDERNLDEDEDDSAHTLSAMEDQLRPKVMCA 283
               GD++   +  +D+                        S  +L+AME +LRP+VM  
Sbjct: 239 TNVGGDMQMPEEEEEDEDE----------------------SNLSLAAMEAELRPQVMET 276

Query: 284 LDEIAEVYRELRSLQDNAVN------GQKDEKSSVKCKVLKEKLVKLVGSLSLNQSRIDL 337
           LD IA+ Y++LR LQD  V       G        + K LK++L+  V SLSLNQ+RID 
Sbjct: 277 LDLIADTYKKLRKLQDQQVEARLACAGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDS 336

Query: 338 LVEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPEGEWKN 397
           LVEQLYDISKR+M NEG LLRLA+SYG+KRD FLE++QG ELDP+W+    +     WK+
Sbjct: 337 LVEQLYDISKRLMQNEGRLLRLAESYGVKRDSFLEQYQGAELDPNWMKSVGNLAARGWKD 396

Query: 398 FVACEVDSILKIRNEIKSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVI 457
           F   E ++I +IR EI++++ ETGISI+EFR IVSMV+KGE EA IAKKEMVEANLRLVI
Sbjct: 397 FAREENNTIREIRQEIQNLATETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVI 456

Query: 458 SVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSC 517
           S+AKKYTNRGLQFLDLIQEGNIGLMKA +KF++  GYKFSTYA WW++QAITRSIADQ+ 
Sbjct: 457 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 516

Query: 518 TIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLE 577
           TIRIPVHM + I+K+VRT+R+M ++I REPTPEE+A+KLAMP+E VRKVLKI KEPISLE
Sbjct: 517 TIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLE 576

Query: 578 TPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMN 637
           TP+GDE+ SHLGDFIEDKNA+ P+D+AIQANLRETTTRVLASLTPREERVLRMRFGIGMN
Sbjct: 577 TPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMN 636

Query: 638 TDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD 681
           TDHTLEEVG+QF VTRERIRQIEAKA+RKLKHPSRS+KLRSFLD
Sbjct: 637 TDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 680