BLAST/PSIBLAST alignment of GI: 254780289 and GI: 241205658 at iteration 1
>gi|241205658|ref|YP_002976754.1| RNA polymerase sigma factor RpoD [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 685
>gi|240859548|gb|ACS57215.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 685
Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/706 (62%), Positives = 528/706 (74%), Gaps = 47/706 (6%)
Query: 1 MTIGKKRNRDSDSEHEDSDDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSS 60
M K N D++ E + + D + D SDD+ KKMIK A++RGYVT++ELNA LP +EV+S
Sbjct: 1 MATKVKENEDAEVERDGASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS 60
Query: 61 EQMEDTVAMLSNMGINVVD-----------------GDDLEDEEGSEDSLDLASSASNSS 103
EQ+EDT++MLS+MGINV++ E+ EG E LA S S ++
Sbjct: 61 EQIEDTMSMLSDMGINVIEDEEAEEAGASGSSDDDDAGSDEESEGGE----LAPS-SGTA 115
Query: 104 VFLQKRKDSADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLT 163
+ K+K+ DR TDDPVRMYLREMGS+ELLSREGEIAIAKRIEAGR M+A LCESPLT
Sbjct: 116 LAAAKKKEPTDR-TDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLT 174
Query: 164 FQALIIWRDELNDGTTLLREIIDLEACI-GPESKGG-FFHGTEGHSYQKREDSSQEKERD 221
FQALIIWRDELN+GTTLLREIIDLE GPE+K F E ++ +EK R
Sbjct: 175 FQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKLAEEKEKTR- 233
Query: 222 DVQETEGDIESAAKVSKDDRSKVDSPPENAENDERNLDEDEDDSAHTLSAMEDQLRPKVM 281
A+ DD + V AE +E + ED+S +L+AME +LRP+VM
Sbjct: 234 -----------RARSGDDDITDVGGEGLPAEEEEED----EDESNLSLAAMEAELRPQVM 278
Query: 282 CALDEIAEVYRELRSLQDNAV------NGQKDEKSSVKCKVLKEKLVKLVGSLSLNQSRI 335
LD IAE Y++LR LQD V +G + K LK++L+K V SLSLNQ+RI
Sbjct: 279 ETLDTIAETYKKLRKLQDQQVEQRLSASGTLSTAQERRYKELKDELIKAVKSLSLNQNRI 338
Query: 336 DLLVEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPEGEW 395
D LVEQLYDI+KR++ NEG LLRLA+SYG+KRD FLE++QG ELDP+W+ + W
Sbjct: 339 DALVEQLYDINKRLVSNEGRLLRLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGW 398
Query: 396 KNFVACEVDSILKIRNEIKSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRL 455
K F E +I IR EI++++ ETGISISEFR IV MV+KGE EA IAKKEMVEANLRL
Sbjct: 399 KEFARGENTTIRDIRQEIQNLATETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRL 458
Query: 456 VISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQ 515
VIS+AKKYTNRGLQFLDLIQEGNIGLMKA +KF++ GYKFSTYA WW++QAITRSIADQ
Sbjct: 459 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 518
Query: 516 SCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPIS 575
+ TIRIPVHM + I+K+VRT+R+M ++I REPTPEE+A+KLAMP+E VRKVLKI KEPIS
Sbjct: 519 ARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPIS 578
Query: 576 LETPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIG 635
LETP+GDE+ SHLGDFIEDKNA+ P+D+AIQANLRETTTRVLASLTPREERVLRMRFGIG
Sbjct: 579 LETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIG 638
Query: 636 MNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD 681
MNTDHTLEEVG+QF VTRERIRQIEAKA+RKLKHPSRS+KLRSFLD
Sbjct: 639 MNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 684