RPSBLAST alignment for GI: 254780289 and conserved domain: pfam03979
>gnl|CDD|112778 pfam03979, Sigma70_r1_1, Sigma-70 factor, region 1.1. Region 1.1 modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase. Region 1.1 is also involved in promoter binding. Length = 79
Score = 73.5 bits (181), Expect = 2e-13
Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 25 DFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSSEQMEDTVAMLSNMGINVV---DGD 81
D S KK+I+ ++RGY+T +E+N LPPD+V SEQ++D ++ML +MGI VV D +
Sbjct: 3 DLSQAQVKKLIEQGKKRGYLTYDEINEALPPDDVDSEQIDDIISMLEDMGIEVVEEADSE 62
Query: 82 DLEDEEGSEDS 92
+L++E S++
Sbjct: 63 ELDEETSSDED 73