RPSBLAST alignment for GI: 254780289 and conserved domain: TIGR02835
>gnl|CDD|131882 TIGR02835, spore_sigmaE, RNA polymerase sigma-E factor. Members of this family comprise the Firmicutes lineage endospore formation-specific sigma factor SigE, also called SpoIIGB and sigma-29. As characterized in Bacillus subtilis, this protein is synthesized as a precursor, specifically in the mother cell compartment, and must cleaved by the SpoIIGA protein to be made active. Length = 234
Score = 64.8 bits (158), Expect = 7e-11
Identities = 58/247 (23%), Positives = 115/247 (46%), Gaps = 53/247 (21%)
Query: 422 ISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGL 481
++ E ++ + +G+ A K ++E NLRLV+ +A+K+ N G+ DL+ G IGL
Sbjct: 34 LTGEEEEALLQKLTQGDESA---KSTLIERNLRLVVYIARKFENTGIGIEDLVSIGTIGL 90
Query: 482 MKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSN 541
+KA F+ K +TYA +R I ++ I +++ R +N
Sbjct: 91 IKAVNTFNPSKKIKLATYA--------SRCIENE-----ILMYL------------RRNN 125
Query: 542 KIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPL 601
K + E + +E L + +G +L + + D+ + ++E++
Sbjct: 126 KTRSEVSFDE---PLNVDWDGNELLL----------SDVLGTDSDIVYKYLEEEVD---- 168
Query: 602 DSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEA 661
RE + LA L RE++++ +RFG+ T+ T +EV +++ I ++E
Sbjct: 169 --------RELLRKALAKLNDREKKIMELRFGLVGGTEKTQKEVADMLGISQSYISRLEK 220
Query: 662 KAIRKLK 668
+ +++LK
Sbjct: 221 RILKRLK 227