RPSBLAST alignment for GI: 254780289 and conserved domain: pfam04545
>gnl|CDD|146939 pfam04545, Sigma70_r4, Sigma-70, region 4. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives. Length = 50
Score = 67.4 bits (166), Expect = 1e-11
Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 616 VLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH 669
LASL PRE VL +RFG TLEE+G++ ++RER+RQIE +A+RKL+
Sbjct: 1 ALASLPPREREVLVLRFG----EGLTLEEIGERLGISRERVRQIEKRALRKLRK 50