RPSBLAST alignment for GI: 254780289 and conserved domain: TIGR02997
>gnl|CDD|163097 TIGR02997, Sig70-cyanoRpoD, RNA polymerase sigma factor, cyanobacterial RpoD-like family. This family includes a number of closely related sigma-70 (TIGR02937) factors in the cyanobacteria. All appear most closely related to the essential sigma-70 factor RpoD, and some score above trusted to the RpoD C-terminal domain model (TIGR02393). Length = 298
Score = 302 bits (776), Expect = 2e-82
Identities = 121/248 (48%), Positives = 180/248 (72%), Gaps = 8/248 (3%)
Query: 421 GISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIG 480
G+S +E R + ++ AK++M++ANLRLV+SVAKKY NRGL+ LDLIQEG++G
Sbjct: 59 GLSEAELRQRLRQGQR-------AKEKMIKANLRLVVSVAKKYQNRGLELLDLIQEGSLG 111
Query: 481 LMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMS 540
L +A EKFD GYKFSTYA WW++Q ITR+IA+QS TIR+P+H+ +K++K+ + R +S
Sbjct: 112 LERAVEKFDPTRGYKFSTYAYWWIRQGITRAIANQSRTIRLPIHITEKLNKIKKVQRELS 171
Query: 541 NKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSP 600
K+ R P+ EIA+ L + E VR++L+ ++P+SL+ P+GDE+ + LGD +ED + SP
Sbjct: 172 QKLGRTPSEAEIAEALELEPEQVRELLQRARQPVSLDAPVGDEEDTELGDLLED-DGESP 230
Query: 601 LDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIE 660
+ + +LR+ +LA LTPRE +VLR+RFG+ TL E+G++ ++RER+RQIE
Sbjct: 231 EEQVERESLRQDLESLLAELTPRERQVLRLRFGLDGGEPLTLAEIGRRLNLSRERVRQIE 290
Query: 661 AKAIRKLK 668
AKA+RKL+
Sbjct: 291 AKALRKLR 298