RPSBLAST alignment for GI: 254780289 and conserved domain: TIGR02997

>gnl|CDD|163097 TIGR02997, Sig70-cyanoRpoD, RNA polymerase sigma factor, cyanobacterial RpoD-like family. This family includes a number of closely related sigma-70 (TIGR02937) factors in the cyanobacteria. All appear most closely related to the essential sigma-70 factor RpoD, and some score above trusted to the RpoD C-terminal domain model (TIGR02393). Length = 298
 Score =  302 bits (776), Expect = 2e-82
 Identities = 121/248 (48%), Positives = 180/248 (72%), Gaps = 8/248 (3%)

Query: 421 GISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIG 480
           G+S +E R  +   ++       AK++M++ANLRLV+SVAKKY NRGL+ LDLIQEG++G
Sbjct: 59  GLSEAELRQRLRQGQR-------AKEKMIKANLRLVVSVAKKYQNRGLELLDLIQEGSLG 111

Query: 481 LMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMS 540
           L +A EKFD   GYKFSTYA WW++Q ITR+IA+QS TIR+P+H+ +K++K+ +  R +S
Sbjct: 112 LERAVEKFDPTRGYKFSTYAYWWIRQGITRAIANQSRTIRLPIHITEKLNKIKKVQRELS 171

Query: 541 NKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSP 600
            K+ R P+  EIA+ L +  E VR++L+  ++P+SL+ P+GDE+ + LGD +ED +  SP
Sbjct: 172 QKLGRTPSEAEIAEALELEPEQVRELLQRARQPVSLDAPVGDEEDTELGDLLED-DGESP 230

Query: 601 LDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIE 660
            +   + +LR+    +LA LTPRE +VLR+RFG+      TL E+G++  ++RER+RQIE
Sbjct: 231 EEQVERESLRQDLESLLAELTPRERQVLRLRFGLDGGEPLTLAEIGRRLNLSRERVRQIE 290

Query: 661 AKAIRKLK 668
           AKA+RKL+
Sbjct: 291 AKALRKLR 298