RPSBLAST alignment for GI: 254780289 and conserved domain: PRK07122

>gnl|CDD|168831 PRK07122, PRK07122, RNA polymerase sigma factor SigF; Reviewed. Length = 264
 Score = 82.5 bits (204), Expect = 3e-16
 Identities = 65/257 (25%), Positives = 120/257 (46%), Gaps = 21/257 (8%)

Query: 423 SISEFRHIVSMVRK------GECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQE 476
           S  E+  +  M R+      G  E    +  +V   L L   +A+++  RG    DL+Q 
Sbjct: 14  STDEYADVPEMFRELAGLPAGSPEFQRQRDRIVTRCLPLADHIARRFDGRGEPRDDLVQV 73

Query: 477 GNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTA 536
             +GL+ A  +FD   G  F ++A+  +   + R   D S ++++P  +++   ++ R  
Sbjct: 74  ARVGLVNAVNRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGRAT 133

Query: 537 RRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKI--TKEPISLETPIG--DEDTSHLGDFI 592
             +S ++ R PT  E+A +L M  E V + L        +S+++  G  D+D   + D +
Sbjct: 134 AELSQRLGRAPTASELAAELGMDREEVVEGLVAGSAYNTLSIDSGGGSGDDDARAIADTL 193

Query: 593 EDKNAVSPLDSAI-QANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCV 651
            D      +D+ + Q   RE    +LA+L  RE  VL +RF   M      E VG    +
Sbjct: 194 GD------VDAGLDQIENREALRPLLAALPERERTVLVLRFFESMTQTQIAERVG----I 243

Query: 652 TRERIRQIEAKAIRKLK 668
           ++  + ++ AK + +L+
Sbjct: 244 SQMHVSRLLAKTLARLR 260